Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29489 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48502 * 109.47042 * 271.12876 * 3 2 1 5 5 H 1.48500 * 109.47434 * 31.12599 * 3 2 1 6 6 H 1.48504 * 109.46991 * 151.12928 * 3 2 1 7 7 C 1.46594 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99682 * 356.63185 * 7 2 1 9 9 C 1.39515 * 120.00127 * 176.62585 * 7 2 1 10 10 C 1.41748 * 120.18588 * 325.35986 * 9 7 2 11 11 C 1.35801 * 119.80361 * 179.69875 * 10 9 7 12 12 C 1.40183 * 120.18796 * 0.54212 * 11 10 9 13 13 N 1.37663 * 119.81080 * 179.72057 * 12 11 10 14 14 C 1.46501 * 119.99812 * 353.41971 * 13 12 11 15 15 C 1.52998 * 109.47210 * 305.63981 * 14 13 12 16 16 O 1.42902 * 109.47245 * 299.81412 * 15 14 13 17 17 C 1.53002 * 109.46861 * 185.64421 * 14 13 12 18 18 O 1.42902 * 109.47060 * 180.02562 * 17 14 13 19 19 C 1.52992 * 109.47193 * 65.63998 * 14 13 12 20 20 O 1.42905 * 109.47220 * 61.41835 * 19 14 13 21 21 C 1.40142 * 120.37952 * 359.45101 * 12 11 10 22 22 C 1.35834 * 120.18910 * 0.27251 * 21 12 11 23 23 N 1.48014 * 120.09355 * 179.97438 * 22 21 12 24 24 O 1.31698 * 120.00571 * 4.25080 * 23 22 21 25 25 O 1.31708 * 119.99818 * 184.25973 * 23 22 21 26 26 H 0.97001 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.09638 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.90705 * 180.27230 * 11 10 9 29 29 H 0.97000 * 119.99838 * 173.41838 * 13 12 11 30 30 H 1.08996 * 109.47393 * 179.80614 * 15 14 13 31 31 H 1.09000 * 109.47218 * 59.80981 * 15 14 13 32 32 H 0.96705 * 113.99784 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47030 * 299.99513 * 17 14 13 34 34 H 1.08998 * 109.47339 * 60.00219 * 17 14 13 35 35 H 0.96697 * 114.00474 * 179.97438 * 18 17 14 36 36 H 1.08999 * 109.47164 * 181.41541 * 19 14 13 37 37 H 1.08996 * 109.47616 * 301.41703 * 19 14 13 38 38 H 0.96692 * 114.00130 * 179.97438 * 20 19 14 39 39 H 1.08000 * 119.90796 * 180.28972 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.4524 2.0602 -1.3998 5 1 1.4384 2.6457 0.7237 6 1 3.5382 1.4334 0.6760 7 6 2.0279 -1.2695 0.0006 8 1 1.4893 -2.2040 0.0559 9 6 3.4213 -1.2706 -0.0705 10 6 4.0968 -0.2843 -0.8322 11 6 5.4535 -0.2889 -0.8911 12 6 6.1852 -1.2721 -0.2106 13 7 7.5601 -1.2729 -0.2803 14 6 8.2486 -0.3406 -1.1764 15 6 7.7030 -0.5014 -2.5968 16 8 7.9269 -1.8399 -3.0444 17 6 9.7489 -0.6406 -1.1695 18 8 10.4206 0.2692 -2.0432 19 6 8.0130 1.0937 -0.6990 20 8 8.5521 1.2530 0.6149 21 6 5.5254 -2.2508 0.5448 22 6 4.1691 -2.2573 0.6189 23 7 3.4744 -3.2924 1.4169 24 8 4.1719 -4.1575 2.1237 25 8 2.1585 -3.3484 1.4200 26 1 -0.4850 0.8400 -0.0004 27 1 3.5343 0.4713 -1.3606 28 1 5.9701 0.4644 -1.4674 29 1 8.0729 -1.8907 0.2639 30 1 8.2128 0.1946 -3.2628 31 1 6.6335 -0.2910 -2.6011 32 1 7.6057 -2.0141 -3.9398 33 1 10.1377 -0.5260 -0.1577 34 1 9.9167 -1.6624 -1.5098 35 1 11.3775 0.1373 -2.0882 36 1 8.5043 1.7887 -1.3800 37 1 6.9428 1.2992 -0.6799 38 1 8.4387 2.1405 0.9815 39 1 6.0969 -3.0019 1.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167931198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = -110.040705 kcal Electronic energy + Delta-G solvation = -27104.081281 eV Core-core repulsion = 23015.756348 eV Total energy + Delta-G solvation = -4088.324933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.37942 -39.71832 -38.01996 -37.27368 -37.05820 -36.56087 -35.50623 -34.21226 -32.90254 -32.22316 -30.71202 -27.57156 -27.28015 -26.25897 -25.44306 -23.65385 -22.38669 -20.82325 -20.11714 -18.99206 -18.57740 -18.45638 -18.22542 -17.96073 -17.49321 -17.16723 -16.20003 -15.99601 -15.93084 -15.91182 -15.43360 -15.32177 -15.14274 -14.87900 -14.57176 -14.17821 -14.04654 -13.88033 -13.40725 -13.30766 -13.08240 -12.76749 -12.73330 -12.48117 -11.85170 -11.61193 -11.49771 -11.17403 -11.05020 -11.03530 -10.98413 -10.79320 -10.64453 -10.55613 -10.07827 -9.49780 -8.68501 -6.78432 -1.06200 0.63073 0.86958 1.15898 1.35168 1.48167 1.53674 1.92558 2.18427 2.31139 2.92552 2.95172 3.41994 3.77414 3.85301 3.88138 4.01672 4.02108 4.09622 4.25978 4.36134 4.44677 4.48690 4.58821 4.64055 4.73052 4.79842 4.81814 4.91079 5.04496 5.19384 5.30344 5.36735 5.57652 5.86188 5.99325 6.32835 6.52037 6.74666 6.86985 6.91228 6.95356 7.09674 7.41224 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.005184 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.864027 B = 5399.586212 C = 6394.832628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.197 1.197 5 H -0.256 1.256 6 H -0.234 1.234 7 C -0.245 4.245 8 H 0.098 0.902 9 C -0.001 4.001 10 C -0.115 4.115 11 C -0.126 4.126 12 C 0.203 3.797 13 N -0.707 5.707 14 C 0.179 3.821 15 C 0.056 3.944 16 O -0.579 6.579 17 C 0.096 3.904 18 O -0.572 6.572 19 C 0.059 3.941 20 O -0.579 6.579 21 C -0.194 4.194 22 C -0.022 4.022 23 N 0.016 4.984 24 O -0.494 6.494 25 O -0.421 6.421 26 H 0.334 0.666 27 H 0.155 0.845 28 H 0.178 0.822 29 H 0.399 0.601 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.395 0.605 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.401 0.599 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.396 0.604 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.590 17.917 -12.578 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.220 4.220 3 Si 0.783 3.217 4 H -0.119 1.119 5 H -0.181 1.181 6 H -0.157 1.157 7 C -0.275 4.275 8 H 0.116 0.884 9 C -0.007 4.007 10 C -0.135 4.135 11 C -0.145 4.145 12 C 0.095 3.905 13 N -0.338 5.338 14 C 0.092 3.908 15 C -0.022 4.022 16 O -0.387 6.387 17 C 0.017 3.983 18 O -0.379 6.379 19 C -0.019 4.019 20 O -0.386 6.386 21 C -0.221 4.221 22 C -0.137 4.137 23 N 0.378 4.622 24 O -0.600 6.600 25 O -0.540 6.540 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.195 0.805 29 H 0.233 0.767 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.244 0.756 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.246 0.754 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.229 17.385 -12.137 26.701 hybrid contribution -0.375 -0.903 0.753 1.234 sum 15.854 16.482 -11.384 25.546 Atomic orbital electron populations 1.68847 1.10835 1.36183 1.17246 1.29376 0.96190 1.05434 0.91046 0.85554 0.80255 0.72074 0.83799 1.11911 1.18113 1.15667 1.22801 0.92125 0.96953 1.15661 0.88414 1.17527 0.92941 0.94353 0.95891 1.21132 0.94771 0.98180 0.99387 1.21349 0.93448 0.98717 1.01030 1.17082 0.84208 0.93224 0.95956 1.43608 1.01546 1.41757 1.46914 1.20353 0.92663 0.88946 0.88818 1.22828 1.00484 0.85060 0.93840 1.86419 1.84936 1.29461 1.37892 1.21740 0.90103 0.92679 0.93775 1.86275 1.26330 1.58225 1.67109 1.22784 0.98584 0.95187 0.85377 1.86406 1.82614 1.38243 1.31368 1.19220 0.91197 1.02942 1.08772 1.19798 0.91898 0.96329 1.05632 1.49415 1.00906 1.05144 1.06743 1.95900 1.65826 1.43816 1.54446 1.95880 0.92177 1.83910 1.82009 0.85074 0.82748 0.80508 0.76690 0.90101 0.91517 0.75551 0.92668 0.92981 0.74833 0.90097 0.91896 0.75448 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -29.52 13.89 23.22 0.32 -29.20 16 2 C 0.01 0.47 5.68 87.22 0.50 0.96 16 3 Si 0.97 27.23 24.51 68.60 1.68 28.91 16 4 H -0.20 -3.98 6.87 99.48 0.68 -3.30 16 5 H -0.26 -6.69 7.11 99.48 0.71 -5.98 16 6 H -0.23 -6.93 6.31 99.48 0.63 -6.30 16 7 C -0.24 -12.42 8.63 24.76 0.21 -12.21 16 8 H 0.10 5.97 5.65 -2.91 -0.02 5.95 16 9 C 0.00 -0.07 5.22 -21.25 -0.11 -0.18 16 10 C -0.12 -3.98 6.79 22.57 0.15 -3.83 16 11 C -0.13 -3.75 6.67 22.18 0.15 -3.60 16 12 C 0.20 7.18 6.25 39.16 0.24 7.42 16 13 N -0.71 -19.97 4.94 -298.97 -1.48 -21.44 16 14 C 0.18 3.77 0.46 3.60 0.00 3.77 16 15 C 0.06 1.05 5.38 71.98 0.39 1.44 16 16 O -0.58 -12.38 12.84 -148.98 -1.91 -14.29 16 17 C 0.10 1.77 5.73 71.98 0.41 2.18 16 18 O -0.57 -8.20 12.34 -148.98 -1.84 -10.04 16 19 C 0.06 1.05 5.53 71.98 0.40 1.45 16 20 O -0.58 -11.22 12.82 -148.98 -1.91 -13.13 16 21 C -0.19 -9.19 9.36 22.17 0.21 -8.99 16 22 C -0.02 -1.20 6.90 36.68 0.25 -0.94 16 23 N 0.02 1.08 4.98 -45.75 -0.23 0.86 16 24 O -0.49 -35.12 19.13 3.52 0.07 -35.05 16 25 O -0.42 -29.82 16.16 3.50 0.06 -29.76 16 26 H 0.33 11.17 8.27 -92.71 -0.77 10.40 16 27 H 0.16 4.18 4.36 -2.91 -0.01 4.17 16 28 H 0.18 3.60 3.31 -2.91 -0.01 3.59 16 29 H 0.40 11.44 8.47 -92.71 -0.79 10.66 16 30 H 0.08 1.18 7.69 -2.39 -0.02 1.16 16 31 H 0.07 1.24 4.50 -2.39 -0.01 1.22 16 32 H 0.40 5.21 9.12 -74.05 -0.68 4.54 16 33 H 0.06 1.06 7.65 -2.39 -0.02 1.04 16 34 H 0.05 1.04 7.68 -2.39 -0.02 1.02 16 35 H 0.40 2.43 9.12 -74.06 -0.68 1.76 16 36 H 0.08 1.11 7.72 -2.39 -0.02 1.09 16 37 H 0.06 1.10 4.81 -2.39 -0.01 1.09 16 38 H 0.40 4.30 9.12 -74.06 -0.68 3.63 16 39 H 0.10 5.17 7.54 -2.91 -0.02 5.15 16 Total: -1.00 -90.63 319.47 -4.15 -94.78 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: -1.72 Total: 40.90 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 2.80 Total: -12.52 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -1.38 Total: -49.78 kcal Atomic # 8 Polarization: -96.74 SS G_CDS: -5.54 Total: -102.28 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: 1.68 Total: 28.91 kcal Total: -90.63 -4.15 -94.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167931198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.257 kcal (2) G-P(sol) polarization free energy of solvation -90.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds