Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47469 * 2 1 4 4 N 1.46502 * 109.47025 * 120.00337 * 2 1 3 5 5 C 1.38532 * 119.99955 * 274.99666 * 4 2 1 6 6 C 1.40045 * 120.44958 * 359.72343 * 5 4 2 7 7 C 1.38801 * 118.58794 * 179.77890 * 6 5 4 8 8 Cl 1.73604 * 120.33353 * 180.24158 * 7 6 5 9 9 N 1.32204 * 119.32876 * 0.49422 * 7 6 5 10 10 C 1.33416 * 120.86178 * 359.74775 * 9 7 6 11 11 C 1.41568 * 119.24057 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00294 * 179.97438 * 11 10 9 13 13 C 1.40055 * 119.99732 * 359.97438 * 11 10 9 14 14 N 1.30689 * 120.00030 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99842 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47421 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47004 * 119.99976 * 15 13 11 18 18 H 1.48503 * 109.47058 * 239.99711 * 15 13 11 19 19 N 1.32565 * 120.44748 * 179.97438 * 5 4 2 20 20 C 1.53009 * 109.46917 * 240.00407 * 2 1 3 21 21 H 1.08999 * 109.53690 * 185.11254 * 20 2 1 22 22 C 1.53096 * 109.50840 * 64.99935 * 20 2 1 23 23 N 1.47005 * 109.25674 * 183.21649 * 22 20 2 24 24 C 1.47010 * 110.75583 * 58.61728 * 23 22 20 25 25 C 1.53101 * 109.25772 * 301.38586 * 24 23 22 26 26 O 1.43005 * 109.26043 * 56.84635 * 25 24 23 27 27 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46785 * 300.00150 * 1 2 3 29 29 H 1.09003 * 109.46973 * 59.99837 * 1 2 3 30 30 H 0.97003 * 119.99347 * 94.99967 * 4 2 1 31 31 H 1.07995 * 120.70467 * 0.02562 * 6 5 4 32 32 H 0.97009 * 119.99815 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.50680 * 303.15196 * 22 20 2 34 34 H 1.09007 * 109.50443 * 63.23613 * 22 20 2 35 35 H 1.00899 * 110.99824 * 182.39502 * 23 22 20 36 36 H 1.09005 * 109.50762 * 61.32126 * 24 23 22 37 37 H 1.09005 * 109.51385 * 181.40518 * 24 23 22 38 38 H 1.09007 * 109.50597 * 176.78233 * 25 24 23 39 39 H 1.08999 * 109.50386 * 296.86609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1507 0.0004 2.3895 6 6 1.8259 1.3607 2.4617 7 6 1.9687 2.0140 3.6779 8 17 1.5732 3.6984 3.8202 9 7 2.4137 1.3418 4.7258 10 6 2.7208 0.0471 4.6283 11 6 3.1939 -0.6394 5.7724 12 1 3.4457 -1.6877 5.7075 13 6 3.3354 0.0408 6.9885 14 7 3.0302 1.3091 7.0671 15 14 3.9603 -0.8649 8.4980 16 1 4.2324 -2.2821 8.1476 17 1 5.2113 -0.2240 8.9772 18 1 2.9335 -0.8088 9.5693 19 7 2.5912 -0.6159 3.4774 20 6 2.0400 -0.7212 -1.2494 21 1 3.1262 -0.8018 -1.2059 22 6 1.6354 0.0689 -2.4967 23 7 2.0604 -0.6674 -3.6960 24 6 1.4531 -2.0058 -3.7282 25 6 1.8595 -2.7751 -2.4684 26 8 1.4662 -2.0297 -1.3131 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2490 -1.6319 1.1524 31 1 1.4682 1.8892 1.5905 32 1 3.1286 1.7803 7.9094 33 1 0.5529 0.1956 -2.5120 34 1 2.1162 1.0470 -2.4798 35 1 1.8410 -0.1505 -4.5343 36 1 0.3676 -1.9122 -3.7633 37 1 1.8008 -2.5423 -4.6111 38 1 1.3656 -3.7468 -2.4602 39 1 2.9403 -2.9161 -2.4609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170560866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = 3.234950 kcal Electronic energy + Delta-G solvation = -23608.945979 eV Core-core repulsion = 19998.534963 eV Total energy + Delta-G solvation = -3610.411016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93055 -38.94255 -36.32202 -35.53910 -34.76389 -33.69337 -32.38670 -30.94066 -29.60976 -28.47998 -26.57448 -26.32020 -24.50609 -22.46704 -22.06234 -21.01759 -20.02156 -17.98190 -17.27402 -16.59139 -16.22691 -15.97442 -15.29743 -15.08819 -14.78646 -14.59878 -14.22736 -14.13824 -13.68672 -13.54015 -13.32637 -12.91358 -12.74771 -12.58442 -12.08677 -11.66985 -11.54459 -11.37800 -11.31956 -11.12247 -10.90099 -10.80267 -10.61412 -10.33528 -10.16070 -9.94319 -9.86088 -9.10676 -8.97763 -8.80803 -8.23691 -7.45022 -7.10866 -6.54465 -4.77280 2.55020 2.99435 3.00383 3.07887 3.13888 3.15254 3.53676 3.68021 3.88453 3.98824 4.64058 4.67226 4.75670 4.78833 4.91172 5.01596 5.13959 5.30654 5.39512 5.43577 5.54930 5.64571 5.80759 5.86220 5.90954 6.09581 6.15327 6.38703 6.44015 6.50056 6.54975 6.86052 6.90433 6.95892 7.04013 7.17488 7.77065 8.15572 8.27550 8.57401 8.63093 9.09661 10.11992 10.26980 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.003475 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.140431 B = 8054.646302 C = 9312.904145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.092 0.908 4 N -0.720 5.720 5 C 0.458 3.542 6 C -0.407 4.407 7 C 0.269 3.731 8 Cl -0.084 7.084 9 N -0.529 5.529 10 C 0.436 3.564 11 C -0.395 4.395 12 H 0.096 0.904 13 C 0.065 3.935 14 N -0.702 5.702 15 Si 0.919 3.081 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.641 5.641 20 C 0.088 3.912 21 H 0.073 0.927 22 C 0.026 3.974 23 N -0.688 5.688 24 C 0.019 3.981 25 C 0.062 3.938 26 O -0.373 6.373 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.401 0.599 31 H 0.111 0.889 32 H 0.276 0.724 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.346 0.654 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 -2.399 -16.589 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.109 0.891 4 N -0.356 5.356 5 C 0.211 3.789 6 C -0.440 4.440 7 C 0.088 3.912 8 Cl -0.056 7.056 9 N -0.250 5.250 10 C 0.200 3.800 11 C -0.430 4.430 12 H 0.114 0.886 13 C -0.163 4.163 14 N -0.323 5.323 15 Si 0.742 3.258 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.371 5.371 20 C 0.029 3.971 21 H 0.091 0.909 22 C -0.104 4.104 23 N -0.320 5.320 24 C -0.110 4.110 25 C -0.015 4.015 26 O -0.291 6.291 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.164 0.836 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.362 -2.722 -15.215 15.636 hybrid contribution -0.840 0.403 -0.684 1.156 sum -3.202 -2.319 -15.899 16.383 Atomic orbital electron populations 1.22249 0.95620 1.02789 1.01672 1.20731 0.94322 0.96017 0.82596 0.89051 1.44029 1.73235 1.12425 1.05885 1.18134 0.87349 0.87290 0.86120 1.20917 1.29070 0.95417 0.98633 1.21435 0.93307 0.85761 0.90685 1.98292 1.92112 1.16743 1.98473 1.68584 1.19667 1.09034 1.27719 1.19470 0.87811 0.83757 0.88999 1.19395 1.35421 0.97488 0.90690 0.88584 1.26131 0.94440 0.94961 1.00726 1.70164 1.27626 1.08348 1.26134 0.86085 0.78955 0.80679 0.80062 1.18130 1.19683 1.19693 1.68239 1.29793 1.39628 0.99417 1.22445 0.97942 0.83166 0.93570 0.90922 1.22634 0.99452 0.97831 0.90464 1.60492 1.62411 1.03981 1.05137 1.22626 0.97471 0.91158 0.99785 1.22632 1.00196 0.94516 0.84183 1.88045 1.71166 1.26787 1.43111 0.91697 0.91779 0.92623 0.76318 0.87109 0.91265 0.93387 0.89320 0.83596 0.94233 0.89806 0.88514 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.02 37.16 0.34 -1.89 16 2 C 0.17 2.42 2.15 -67.92 -0.15 2.28 16 3 H 0.09 1.30 6.49 -51.93 -0.34 0.96 16 4 N -0.72 -13.08 5.21 -53.76 -0.28 -13.36 16 5 C 0.46 10.51 7.69 -154.99 -1.19 9.32 16 6 C -0.41 -9.20 8.77 -38.70 -0.34 -9.54 16 7 C 0.27 6.71 7.33 -17.18 -0.13 6.59 16 8 Cl -0.08 -1.79 29.15 -51.86 -1.51 -3.30 16 9 N -0.53 -14.85 7.86 -9.84 -0.08 -14.93 16 10 C 0.44 12.33 7.37 -158.35 -1.17 11.17 16 11 C -0.39 -10.76 9.37 -37.63 -0.35 -11.11 16 12 H 0.10 2.51 7.85 -52.49 -0.41 2.10 16 13 C 0.07 1.65 5.50 -17.36 -0.10 1.55 16 14 N -0.70 -18.57 11.42 55.55 0.63 -17.94 16 15 Si 0.92 18.48 29.56 -169.99 -5.02 13.46 16 16 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 N -0.64 -16.90 10.39 -11.89 -0.12 -17.03 16 20 C 0.09 1.06 2.63 -26.68 -0.07 0.99 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 C 0.03 0.25 5.87 -3.72 -0.02 0.23 16 23 N -0.69 -5.97 6.92 -113.50 -0.79 -6.76 16 24 C 0.02 0.15 6.76 -3.71 -0.03 0.13 16 25 C 0.06 0.59 7.01 37.21 0.26 0.85 16 26 O -0.37 -4.66 9.33 -35.23 -0.33 -4.99 16 27 H 0.06 0.93 7.55 -51.93 -0.39 0.54 16 28 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16 29 H 0.05 0.61 6.50 -51.93 -0.34 0.28 16 30 H 0.40 7.26 8.52 -40.82 -0.35 6.91 16 31 H 0.11 2.18 6.32 -52.49 -0.33 1.85 16 32 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 33 H 0.05 0.46 6.43 -51.93 -0.33 0.12 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.35 2.30 8.90 -39.29 -0.35 1.95 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -30.66 334.13 -10.32 -40.98 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.92 Total: 8.28 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -2.94 Total: 10.56 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.63 Total: -70.01 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.33 Total: -4.99 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.51 Total: -3.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.66 -10.32 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170560866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.211 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds