Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47469 * 2 1 4 4 N 1.46502 * 109.47025 * 120.00337 * 2 1 3 5 5 C 1.38532 * 119.99955 * 274.99666 * 4 2 1 6 6 C 1.40045 * 120.44958 * 359.72343 * 5 4 2 7 7 C 1.38801 * 118.58794 * 179.77890 * 6 5 4 8 8 Cl 1.73604 * 120.33353 * 180.24158 * 7 6 5 9 9 N 1.32204 * 119.32876 * 0.49422 * 7 6 5 10 10 C 1.33416 * 120.86178 * 359.74775 * 9 7 6 11 11 C 1.41568 * 119.24057 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00294 * 179.97438 * 11 10 9 13 13 C 1.40055 * 119.99732 * 359.97438 * 11 10 9 14 14 N 1.30689 * 120.00030 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99842 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47421 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47004 * 119.99976 * 15 13 11 18 18 H 1.48503 * 109.47058 * 239.99711 * 15 13 11 19 19 N 1.32565 * 120.44748 * 179.97438 * 5 4 2 20 20 C 1.53009 * 109.46917 * 240.00407 * 2 1 3 21 21 H 1.08999 * 109.53690 * 185.11254 * 20 2 1 22 22 C 1.53096 * 109.50840 * 64.99935 * 20 2 1 23 23 N 1.47005 * 109.25674 * 183.21649 * 22 20 2 24 24 C 1.47010 * 110.75583 * 58.61728 * 23 22 20 25 25 C 1.53101 * 109.25772 * 301.38586 * 24 23 22 26 26 O 1.43005 * 109.26043 * 56.84635 * 25 24 23 27 27 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46785 * 300.00150 * 1 2 3 29 29 H 1.09003 * 109.46973 * 59.99837 * 1 2 3 30 30 H 0.97003 * 119.99347 * 94.99967 * 4 2 1 31 31 H 1.07995 * 120.70467 * 0.02562 * 6 5 4 32 32 H 0.97009 * 119.99815 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.50680 * 303.15196 * 22 20 2 34 34 H 1.09007 * 109.50443 * 63.23613 * 22 20 2 35 35 H 1.00899 * 110.99824 * 182.39502 * 23 22 20 36 36 H 1.09005 * 109.50762 * 61.32126 * 24 23 22 37 37 H 1.09005 * 109.51385 * 181.40518 * 24 23 22 38 38 H 1.09007 * 109.50597 * 176.78233 * 25 24 23 39 39 H 1.08999 * 109.50386 * 296.86609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1507 0.0004 2.3895 6 6 1.8259 1.3607 2.4617 7 6 1.9687 2.0140 3.6779 8 17 1.5732 3.6984 3.8202 9 7 2.4137 1.3418 4.7258 10 6 2.7208 0.0471 4.6283 11 6 3.1939 -0.6394 5.7724 12 1 3.4457 -1.6877 5.7075 13 6 3.3354 0.0408 6.9885 14 7 3.0302 1.3091 7.0671 15 14 3.9603 -0.8649 8.4980 16 1 4.2324 -2.2821 8.1476 17 1 5.2113 -0.2240 8.9772 18 1 2.9335 -0.8088 9.5693 19 7 2.5912 -0.6159 3.4774 20 6 2.0400 -0.7212 -1.2494 21 1 3.1262 -0.8018 -1.2059 22 6 1.6354 0.0689 -2.4967 23 7 2.0604 -0.6674 -3.6960 24 6 1.4531 -2.0058 -3.7282 25 6 1.8595 -2.7751 -2.4684 26 8 1.4662 -2.0297 -1.3131 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2490 -1.6319 1.1524 31 1 1.4682 1.8892 1.5905 32 1 3.1286 1.7803 7.9094 33 1 0.5529 0.1956 -2.5120 34 1 2.1162 1.0470 -2.4798 35 1 1.8410 -0.1505 -4.5343 36 1 0.3676 -1.9122 -3.7633 37 1 1.8008 -2.5423 -4.6111 38 1 1.3656 -3.7468 -2.4602 39 1 2.9403 -2.9161 -2.4609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170560866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -19.039319 kcal Electronic energy + Delta-G solvation = -23609.911863 eV Core-core repulsion = 19998.534963 eV Total energy + Delta-G solvation = -3611.376901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12507 -40.49777 -37.73392 -37.32024 -35.59854 -35.44234 -33.92817 -32.63693 -30.98608 -29.83653 -28.30036 -27.40897 -25.45644 -24.04478 -23.73629 -22.34422 -20.99211 -19.77762 -18.53310 -18.06140 -17.42655 -17.28226 -16.61751 -16.35419 -15.97043 -15.73713 -15.49252 -15.38511 -15.23881 -14.87953 -14.75407 -14.48944 -14.16511 -13.66222 -13.19363 -13.10257 -12.94268 -12.86141 -12.75582 -12.54638 -12.27057 -12.02656 -11.95549 -11.86908 -11.73891 -11.43680 -10.92834 -10.86018 -10.70390 -10.11916 -9.48268 -9.40386 -8.80357 -8.42513 -6.78368 0.65494 1.14497 1.15878 1.43043 1.53549 1.60477 2.20262 2.32147 2.71910 2.77033 3.15644 3.75365 3.84707 3.90354 4.02941 4.06372 4.21073 4.26522 4.29888 4.38474 4.45656 4.56285 4.63158 4.67327 4.77714 4.84574 4.92372 4.95873 4.99177 5.02132 5.15079 5.36974 5.39862 5.82272 6.02905 6.16481 6.21648 6.36743 6.49945 6.71036 6.76295 7.24279 8.21853 8.38228 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.003475 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.140431 B = 8054.646302 C = 9312.904145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.165 3.835 3 H 0.096 0.904 4 N -0.708 5.708 5 C 0.452 3.548 6 C -0.397 4.397 7 C 0.246 3.754 8 Cl -0.057 7.057 9 N -0.564 5.564 10 C 0.410 3.590 11 C -0.429 4.429 12 H 0.093 0.907 13 C 0.025 3.975 14 N -0.739 5.739 15 Si 1.001 2.999 16 H -0.255 1.255 17 H -0.262 1.262 18 H -0.263 1.263 19 N -0.668 5.668 20 C 0.095 3.905 21 H 0.059 0.941 22 C 0.032 3.968 23 N -0.695 5.695 24 C 0.023 3.977 25 C 0.054 3.946 26 O -0.393 6.393 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.401 0.599 31 H 0.141 0.859 32 H 0.284 0.716 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.360 0.640 36 H 0.042 0.958 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -2.464 -18.097 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 H 0.114 0.886 4 N -0.342 5.342 5 C 0.204 3.796 6 C -0.430 4.430 7 C 0.067 3.933 8 Cl -0.029 7.029 9 N -0.287 5.287 10 C 0.173 3.827 11 C -0.465 4.465 12 H 0.111 0.889 13 C -0.200 4.200 14 N -0.360 5.360 15 Si 0.820 3.180 16 H -0.178 1.178 17 H -0.187 1.187 18 H -0.187 1.187 19 N -0.399 5.399 20 C 0.036 3.964 21 H 0.077 0.923 22 C -0.098 4.098 23 N -0.328 5.328 24 C -0.107 4.107 25 C -0.022 4.022 26 O -0.312 6.312 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.236 0.764 31 H 0.158 0.842 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.180 0.820 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.681 -2.762 -16.821 17.256 hybrid contribution -0.805 0.438 -0.424 1.010 sum -3.486 -2.324 -17.246 17.747 Atomic orbital electron populations 1.22150 0.94697 1.02364 1.02145 1.21014 0.94904 0.96221 0.81868 0.88632 1.44223 1.72054 1.12407 1.05546 1.18478 0.86508 0.87924 0.86713 1.21171 1.27646 0.95304 0.98846 1.21903 0.93218 0.87115 0.91043 1.98282 1.91820 1.14344 1.98466 1.68575 1.21565 1.09325 1.29204 1.19862 0.88418 0.84455 0.89985 1.19717 1.37053 0.97733 0.91957 0.88869 1.27076 0.93928 0.95659 1.03311 1.70236 1.28351 1.09961 1.27479 0.84890 0.78571 0.79146 0.75436 1.17805 1.18653 1.18714 1.68268 1.31315 1.40229 1.00106 1.22274 0.96977 0.83579 0.93597 0.92255 1.22545 0.99842 0.97817 0.89641 1.60459 1.62665 1.04359 1.05360 1.22622 0.97579 0.90847 0.99610 1.22852 1.00145 0.95193 0.84049 1.88011 1.71362 1.27066 1.44783 0.92565 0.93835 0.89516 0.76350 0.84155 0.90460 0.92786 0.88273 0.82002 0.94012 0.87783 0.87007 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.02 71.98 0.65 -3.29 16 2 C 0.17 4.48 2.15 45.00 0.10 4.57 16 3 H 0.10 2.53 6.49 -2.39 -0.02 2.51 16 4 N -0.71 -25.62 5.21 -324.01 -1.69 -27.30 16 5 C 0.45 20.94 7.69 133.40 1.03 21.97 16 6 C -0.40 -17.85 8.77 22.84 0.20 -17.65 16 7 C 0.25 12.39 7.33 84.77 0.62 13.02 16 8 Cl -0.06 -2.41 29.15 -2.72 -0.08 -2.49 16 9 N -0.56 -32.56 7.86 -185.03 -1.45 -34.01 16 10 C 0.41 24.03 7.37 135.16 1.00 25.03 16 11 C -0.43 -24.22 9.37 23.53 0.22 -23.99 16 12 H 0.09 5.07 7.85 -2.91 -0.02 5.05 16 13 C 0.02 1.26 5.50 85.30 0.47 1.73 16 14 N -0.74 -39.91 11.42 21.84 0.25 -39.66 16 15 Si 1.00 38.20 29.56 68.60 2.03 40.23 16 16 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 17 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 18 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 19 N -0.67 -36.30 10.39 -191.55 -1.99 -38.29 16 20 C 0.09 2.14 2.63 30.63 0.08 2.22 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 C 0.03 0.53 5.87 86.32 0.51 1.03 16 23 N -0.69 -10.14 6.92 -512.99 -3.55 -13.69 16 24 C 0.02 0.31 6.76 86.32 0.58 0.89 16 25 C 0.05 0.94 7.01 72.02 0.50 1.45 16 26 O -0.39 -9.32 9.33 -148.98 -1.39 -10.71 16 27 H 0.06 1.53 7.55 -2.39 -0.02 1.52 16 28 H 0.04 1.28 7.80 -2.39 -0.02 1.27 16 29 H 0.09 1.66 6.50 -2.39 -0.02 1.65 16 30 H 0.40 14.60 8.52 -92.71 -0.79 13.81 16 31 H 0.14 5.30 6.32 -2.91 -0.02 5.29 16 32 H 0.28 13.72 8.29 -92.70 -0.77 12.95 16 33 H 0.05 0.84 6.43 -2.39 -0.02 0.83 16 34 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.36 3.66 8.90 -89.69 -0.80 2.86 16 36 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -68.31 334.13 -2.40 -70.70 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.48 Total: 28.24 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 5.95 Total: 26.97 kcal Atomic # 7 Polarization: -144.52 SS G_CDS: -8.43 Total: -152.95 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.39 Total: -10.71 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.49 kcal Total: -68.31 -2.40 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170560866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.665 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds