Wall clock time and date at job start Fri Apr 10 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 120.00494 * 2 1 4 4 H 1.48496 * 109.47189 * 270.00208 * 3 2 1 5 5 H 1.48501 * 109.46781 * 29.99652 * 3 2 1 6 6 H 1.48502 * 109.47420 * 149.99872 * 3 2 1 7 7 C 1.39941 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00144 * 170.00672 * 7 2 1 9 9 C 1.41442 * 120.00143 * 350.00250 * 7 2 1 10 10 C 1.40784 * 120.17622 * 150.97468 * 9 7 2 11 11 C 1.37714 * 120.04367 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41627 * 359.67556 * 11 10 9 13 13 C 1.39903 * 120.35051 * 0.60436 * 12 11 10 14 14 C 1.47838 * 120.02492 * 179.69514 * 13 12 11 15 15 O 1.21539 * 120.00184 * 179.72678 * 14 13 12 16 16 N 1.34777 * 120.00023 * 359.72686 * 14 13 12 17 17 C 1.38715 * 120.00058 * 180.02562 * 16 14 13 18 18 N 1.32755 * 120.15602 * 5.52550 * 17 16 14 19 19 C 1.32028 * 119.99363 * 180.25306 * 18 17 16 20 20 C 1.38812 * 120.30751 * 359.73073 * 19 18 17 21 21 N 1.31740 * 120.31852 * 0.02562 * 20 19 18 22 22 C 1.33005 * 119.99935 * 359.97438 * 21 20 19 23 23 C 1.47813 * 120.15308 * 179.97438 * 22 21 20 24 24 N 1.34780 * 119.99757 * 354.52140 * 23 22 21 25 25 O 1.21556 * 120.00015 * 174.80333 * 23 22 21 26 26 C 1.39054 * 119.94728 * 359.42288 * 13 12 11 27 27 H 0.97001 * 119.99748 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97916 * 0.02599 * 10 9 7 29 29 H 1.08001 * 119.79462 * 180.02562 * 11 10 9 30 30 H 1.07998 * 119.82089 * 180.30273 * 12 11 10 31 31 H 0.96998 * 120.00163 * 0.02562 * 16 14 13 32 32 H 1.07993 * 119.84544 * 179.71541 * 19 18 17 33 33 H 1.08004 * 119.83594 * 180.02562 * 20 19 18 34 34 H 0.97000 * 120.00312 * 0.02562 * 24 23 22 35 35 H 0.97003 * 120.00287 * 180.02562 * 24 23 22 36 36 H 1.07995 * 120.20826 * 180.25801 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4000 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0756 -1.2191 -0.1628 9 6 1.3167 -2.4277 0.2116 10 6 1.7968 -3.6230 -0.3565 11 6 1.1214 -4.8050 -0.1487 12 6 -0.0269 -4.8294 0.6230 13 6 -0.5222 -3.6506 1.1907 14 6 -1.7535 -3.6839 2.0084 15 8 -2.1807 -2.6604 2.5055 16 7 -2.4023 -4.8491 2.2025 17 6 -3.5579 -4.8802 2.9692 18 7 -4.0885 -3.7506 3.4219 19 6 -5.1856 -3.7843 4.1556 20 6 -5.7926 -4.9968 4.4527 21 7 -5.2792 -6.1247 4.0058 22 6 -4.1743 -6.1053 3.2656 23 6 -3.5951 -7.3688 2.7629 24 7 -4.1208 -8.5498 3.1442 25 8 -2.6414 -7.3429 2.0096 26 6 0.1476 -2.4487 0.9901 27 1 -0.4850 0.8401 -0.0004 28 1 2.6953 -3.6130 -0.9557 29 1 1.4935 -5.7198 -0.5860 30 1 -0.5462 -5.7626 0.7837 31 1 -2.0612 -5.6660 1.8060 32 1 -5.6126 -2.8643 4.5264 33 1 -6.6901 -5.0155 5.0532 34 1 -4.8795 -8.5706 3.7482 35 1 -3.7405 -9.3791 2.8146 36 1 -0.2287 -1.5369 1.4299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188666495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:35 Heat of formation + Delta-G solvation = 14.821686 kcal Electronic energy + Delta-G solvation = -24610.657977 eV Core-core repulsion = 20867.349155 eV Total energy + Delta-G solvation = -3743.308822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61957 -39.28275 -39.24429 -37.12423 -35.21008 -34.10676 -33.70430 -33.53550 -30.99399 -29.72008 -29.42475 -25.81310 -25.45247 -24.63557 -22.29215 -21.74511 -20.95010 -19.78810 -18.54622 -18.40240 -17.63156 -17.34965 -16.46846 -15.87637 -15.80596 -15.31848 -15.14674 -14.70610 -14.60626 -14.51378 -13.84938 -13.80566 -13.64011 -13.19235 -12.74637 -12.53837 -11.76935 -11.68874 -11.54153 -11.13722 -11.08416 -10.75427 -10.64487 -10.58021 -10.47232 -10.11808 -10.03196 -9.71459 -9.61272 -9.26101 -8.75269 -8.42832 -7.66799 -7.48032 -6.73087 -4.43081 0.27742 0.99159 2.15678 2.51490 2.81605 2.91678 3.09183 3.12203 3.15390 3.24303 3.54651 3.88855 3.92350 3.95919 4.13492 4.34158 4.66339 4.84359 4.93951 5.12584 5.56932 5.59975 5.98116 6.08987 6.29182 6.38635 6.63659 6.68634 6.88334 6.95486 6.99087 7.07996 7.21941 7.35584 7.37114 7.68843 7.74610 7.86597 7.94298 8.06771 8.16907 8.49305 8.71576 8.81706 8.83438 10.20958 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.003680 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.239528 B = 7607.328090 C = 8938.095659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.097 3.903 10 C -0.201 4.201 11 C -0.100 4.100 12 C -0.209 4.209 13 C -0.134 4.134 14 C 0.549 3.451 15 O -0.474 6.474 16 N -0.641 5.641 17 C 0.392 3.608 18 N -0.439 5.439 19 C 0.127 3.873 20 C -0.009 4.009 21 N -0.383 5.383 22 C -0.046 4.046 23 C 0.593 3.407 24 N -0.830 5.830 25 O -0.537 6.537 26 C -0.081 4.081 27 H 0.284 0.716 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.435 0.565 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.412 0.588 35 H 0.407 0.593 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.280 -11.398 7.954 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.094 3.906 10 C -0.221 4.221 11 C -0.118 4.118 12 C -0.229 4.229 13 C -0.137 4.137 14 C 0.340 3.660 15 O -0.344 6.344 16 N -0.298 5.298 17 C 0.155 3.845 18 N -0.159 5.159 19 C -0.039 4.039 20 C -0.175 4.175 21 N -0.100 5.100 22 C -0.192 4.192 23 C 0.377 3.623 24 N -0.393 5.393 25 O -0.414 6.414 26 C -0.101 4.101 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.288 0.712 32 H 0.195 0.805 33 H 0.193 0.807 34 H 0.242 0.758 35 H 0.239 0.761 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.936 -10.350 7.657 16.892 hybrid contribution 0.028 0.021 -0.039 0.052 sum -10.908 -10.330 7.618 16.844 Atomic orbital electron populations 1.69747 1.07401 1.29563 1.35196 1.25946 0.94891 1.01449 0.92436 0.86217 0.80359 0.80445 0.79149 1.19491 1.20043 1.18503 1.19564 0.95835 0.90169 1.43502 0.90124 1.17602 0.91461 0.92594 0.88902 1.21208 1.02478 0.93399 1.05043 1.20461 0.95615 0.96852 0.98859 1.20524 1.00243 0.95446 1.06700 1.19364 0.95241 0.96109 1.02982 1.19340 0.84379 0.81995 0.80315 1.90794 1.65563 1.32081 1.45969 1.44899 1.21682 1.15639 1.47579 1.19487 0.87446 0.89139 0.88378 1.68891 1.10353 1.26401 1.10303 1.24189 0.89559 0.99881 0.90296 1.23546 1.02455 0.88511 1.02962 1.68064 1.06662 1.31136 1.04117 1.21180 0.98254 0.93075 1.06683 1.17524 0.81955 0.83339 0.79451 1.43466 1.36986 1.07416 1.51416 1.90533 1.27956 1.85949 1.36923 1.21716 0.95825 0.95571 0.96970 0.90532 0.88358 0.88566 0.88552 0.71196 0.80489 0.80705 0.75769 0.76127 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.24 10.82 55.55 0.60 -20.64 16 2 C 0.07 1.80 5.26 -17.34 -0.09 1.70 16 3 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.19 9.06 -37.73 -0.34 -12.53 16 8 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 9 C 0.10 2.59 5.55 -106.87 -0.59 1.99 16 10 C -0.20 -4.84 9.78 -38.81 -0.38 -5.22 16 11 C -0.10 -2.20 10.01 -39.72 -0.40 -2.60 16 12 C -0.21 -4.70 9.55 -38.91 -0.37 -5.07 16 13 C -0.13 -3.30 5.87 -105.04 -0.62 -3.91 16 14 C 0.55 12.87 7.73 -12.33 -0.10 12.77 16 15 O -0.47 -12.13 14.61 5.33 0.08 -12.05 16 16 N -0.64 -12.73 5.21 -12.05 -0.06 -12.79 16 17 C 0.39 6.94 7.42 -154.55 -1.15 5.79 16 18 N -0.44 -7.69 8.05 -11.93 -0.10 -7.78 16 19 C 0.13 1.49 11.22 -17.26 -0.19 1.30 16 20 C -0.01 -0.08 11.21 -17.38 -0.19 -0.28 16 21 N -0.38 -4.37 9.72 -9.49 -0.09 -4.46 16 22 C -0.05 -0.66 6.77 -82.66 -0.56 -1.22 16 23 C 0.59 7.82 8.07 -12.34 -0.10 7.72 16 24 N -0.83 -6.88 8.86 30.52 0.27 -6.61 16 25 O -0.54 -8.62 14.48 5.32 0.08 -8.55 16 26 C -0.08 -2.19 8.20 -38.43 -0.32 -2.50 16 27 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 28 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 29 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.10 1.95 6.38 -52.49 -0.33 1.61 16 31 H 0.43 8.25 3.21 -40.96 -0.13 8.12 16 32 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.41 2.63 8.19 -40.82 -0.33 2.30 16 35 H 0.41 2.55 8.93 -40.82 -0.36 2.19 16 36 H 0.14 4.01 5.79 -52.49 -0.30 3.70 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -33.12 319.22 -7.54 -40.67 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -2.71 Total: 15.50 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -5.40 Total: -2.05 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.62 Total: -52.28 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.15 Total: -20.59 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.12 -7.54 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.487 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds