Wall clock time and date at job start Fri Apr 10 2020 18:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 120.00494 * 2 1 4 4 H 1.48496 * 109.47189 * 270.00208 * 3 2 1 5 5 H 1.48501 * 109.46781 * 29.99652 * 3 2 1 6 6 H 1.48502 * 109.47420 * 149.99872 * 3 2 1 7 7 C 1.39941 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00144 * 170.00672 * 7 2 1 9 9 C 1.41442 * 120.00143 * 350.00250 * 7 2 1 10 10 C 1.40784 * 120.17622 * 150.97468 * 9 7 2 11 11 C 1.37714 * 120.04367 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41627 * 359.67556 * 11 10 9 13 13 C 1.39903 * 120.35051 * 0.60436 * 12 11 10 14 14 C 1.47838 * 120.02492 * 179.69514 * 13 12 11 15 15 O 1.21539 * 120.00184 * 179.72678 * 14 13 12 16 16 N 1.34777 * 120.00023 * 359.72686 * 14 13 12 17 17 C 1.38715 * 120.00058 * 180.02562 * 16 14 13 18 18 N 1.32755 * 120.15602 * 5.52550 * 17 16 14 19 19 C 1.32028 * 119.99363 * 180.25306 * 18 17 16 20 20 C 1.38812 * 120.30751 * 359.73073 * 19 18 17 21 21 N 1.31740 * 120.31852 * 0.02562 * 20 19 18 22 22 C 1.33005 * 119.99935 * 359.97438 * 21 20 19 23 23 C 1.47813 * 120.15308 * 179.97438 * 22 21 20 24 24 N 1.34780 * 119.99757 * 354.52140 * 23 22 21 25 25 O 1.21556 * 120.00015 * 174.80333 * 23 22 21 26 26 C 1.39054 * 119.94728 * 359.42288 * 13 12 11 27 27 H 0.97001 * 119.99748 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97916 * 0.02599 * 10 9 7 29 29 H 1.08001 * 119.79462 * 180.02562 * 11 10 9 30 30 H 1.07998 * 119.82089 * 180.30273 * 12 11 10 31 31 H 0.96998 * 120.00163 * 0.02562 * 16 14 13 32 32 H 1.07993 * 119.84544 * 179.71541 * 19 18 17 33 33 H 1.08004 * 119.83594 * 180.02562 * 20 19 18 34 34 H 0.97000 * 120.00312 * 0.02562 * 24 23 22 35 35 H 0.97003 * 120.00287 * 180.02562 * 24 23 22 36 36 H 1.07995 * 120.20826 * 180.25801 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4000 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0756 -1.2191 -0.1628 9 6 1.3167 -2.4277 0.2116 10 6 1.7968 -3.6230 -0.3565 11 6 1.1214 -4.8050 -0.1487 12 6 -0.0269 -4.8294 0.6230 13 6 -0.5222 -3.6506 1.1907 14 6 -1.7535 -3.6839 2.0084 15 8 -2.1807 -2.6604 2.5055 16 7 -2.4023 -4.8491 2.2025 17 6 -3.5579 -4.8802 2.9692 18 7 -4.0885 -3.7506 3.4219 19 6 -5.1856 -3.7843 4.1556 20 6 -5.7926 -4.9968 4.4527 21 7 -5.2792 -6.1247 4.0058 22 6 -4.1743 -6.1053 3.2656 23 6 -3.5951 -7.3688 2.7629 24 7 -4.1208 -8.5498 3.1442 25 8 -2.6414 -7.3429 2.0096 26 6 0.1476 -2.4487 0.9901 27 1 -0.4850 0.8401 -0.0004 28 1 2.6953 -3.6130 -0.9557 29 1 1.4935 -5.7198 -0.5860 30 1 -0.5462 -5.7626 0.7837 31 1 -2.0612 -5.6660 1.8060 32 1 -5.6126 -2.8643 4.5264 33 1 -6.6901 -5.0155 5.0532 34 1 -4.8795 -8.5706 3.7482 35 1 -3.7405 -9.3791 2.8146 36 1 -0.2287 -1.5369 1.4299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188666495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:34 Heat of formation + Delta-G solvation = -10.608067 kcal Electronic energy + Delta-G solvation = -24611.760694 eV Core-core repulsion = 20867.349155 eV Total energy + Delta-G solvation = -3744.411539 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.101 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.75966 -40.86393 -40.29952 -38.94180 -36.57902 -35.63592 -35.20485 -34.51975 -32.51873 -31.38735 -31.14031 -27.32193 -26.83135 -26.04785 -23.85069 -22.88880 -22.72728 -21.36127 -19.98428 -19.34046 -19.17795 -18.65379 -17.71379 -17.33729 -17.01786 -16.84543 -16.43621 -16.28887 -15.95884 -15.93662 -15.28317 -15.10200 -15.08047 -14.55991 -14.52058 -14.33305 -13.56009 -12.99248 -12.80131 -12.80074 -12.75663 -12.55336 -12.22313 -11.96734 -11.83596 -11.69326 -11.56315 -11.20452 -11.12560 -10.88566 -10.06080 -9.73725 -9.48783 -9.41006 -8.62035 -6.43094 -0.79725 -0.11292 0.38414 0.96228 1.37503 1.45882 1.50994 1.53203 1.66899 1.96469 2.18453 2.20411 2.67075 2.80598 2.96254 3.11038 3.27469 3.62661 3.79503 3.96145 4.15605 4.34582 4.36372 4.51614 4.83299 4.98364 5.04016 5.09602 5.25665 5.32171 5.45384 5.66248 5.77737 5.83367 5.89934 6.01492 6.14012 6.21839 6.29310 6.53953 6.69295 6.86057 6.89511 7.01510 7.16412 8.33889 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.003680 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.239528 B = 7607.328090 C = 8938.095659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.495 4.495 8 H 0.087 0.913 9 C 0.068 3.932 10 C -0.204 4.204 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.145 4.145 14 C 0.548 3.452 15 O -0.512 6.512 16 N -0.640 5.640 17 C 0.349 3.651 18 N -0.488 5.488 19 C 0.121 3.879 20 C 0.028 3.972 21 N -0.377 5.377 22 C -0.042 4.042 23 C 0.587 3.413 24 N -0.800 5.800 25 O -0.571 6.571 26 C -0.115 4.115 27 H 0.286 0.714 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.436 0.564 32 H 0.213 0.787 33 H 0.234 0.766 34 H 0.424 0.576 35 H 0.420 0.580 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.806 -13.353 8.955 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.188 4.188 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.525 4.525 8 H 0.105 0.895 9 C 0.065 3.935 10 C -0.224 4.224 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.148 4.148 14 C 0.339 3.661 15 O -0.385 6.385 16 N -0.298 5.298 17 C 0.115 3.885 18 N -0.209 5.209 19 C -0.045 4.045 20 C -0.139 4.139 21 N -0.094 5.094 22 C -0.185 4.185 23 C 0.370 3.630 24 N -0.363 5.363 25 O -0.451 6.451 26 C -0.136 4.136 27 H 0.096 0.904 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.290 0.710 32 H 0.230 0.770 33 H 0.251 0.749 34 H 0.257 0.743 35 H 0.254 0.746 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.513 -12.422 8.684 19.654 hybrid contribution 0.216 0.415 -0.189 0.505 sum -12.297 -12.007 8.495 19.171 Atomic orbital electron populations 1.69872 1.09165 1.30471 1.36552 1.26892 0.95553 1.05008 0.91353 0.85098 0.78890 0.75486 0.79596 1.18300 1.19757 1.17751 1.19876 0.96287 0.91111 1.45205 0.89496 1.17962 0.91879 0.94064 0.89550 1.21510 1.03048 0.93211 1.04615 1.20909 0.94761 0.97825 0.97849 1.20866 1.00134 0.95522 1.05216 1.19656 0.95819 0.96192 1.03130 1.19188 0.84237 0.82760 0.79942 1.90747 1.66582 1.33523 1.47660 1.44548 1.22745 1.14022 1.48531 1.19676 0.87803 0.90699 0.90292 1.68733 1.12729 1.27619 1.11826 1.24941 0.87998 1.02571 0.88950 1.24510 1.02412 0.86842 1.00107 1.68262 1.05527 1.31718 1.03908 1.21265 0.98537 0.92294 1.06389 1.17538 0.81827 0.84177 0.79445 1.43255 1.36420 1.06466 1.50193 1.90493 1.29590 1.86288 1.38695 1.21505 0.97476 0.95513 0.99061 0.90373 0.86537 0.84222 0.86009 0.71001 0.77010 0.74942 0.74290 0.74587 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.37 10.82 21.83 0.24 -47.13 16 2 C 0.03 1.35 5.26 85.26 0.45 1.80 16 3 Si 0.99 40.08 29.57 68.60 2.03 42.11 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.50 -27.29 9.06 23.47 0.21 -27.08 16 8 H 0.09 4.48 7.87 -2.91 -0.02 4.45 16 9 C 0.07 3.77 5.55 -21.32 -0.12 3.66 16 10 C -0.20 -9.85 9.78 22.77 0.22 -9.63 16 11 C -0.10 -4.10 10.01 22.18 0.22 -3.88 16 12 C -0.20 -8.89 9.55 22.70 0.22 -8.67 16 13 C -0.14 -7.48 5.87 -20.14 -0.12 -7.60 16 14 C 0.55 27.21 7.73 86.78 0.67 27.88 16 15 O -0.51 -28.07 14.61 -3.84 -0.06 -28.12 16 16 N -0.64 -26.33 5.21 -310.31 -1.62 -27.95 16 17 C 0.35 12.50 7.42 133.34 0.99 13.49 16 18 N -0.49 -17.25 8.05 -191.66 -1.54 -18.79 16 19 C 0.12 2.56 11.22 84.80 0.95 3.51 16 20 C 0.03 0.41 11.21 84.84 0.95 1.36 16 21 N -0.38 -7.35 9.72 -183.94 -1.79 -9.13 16 22 C -0.04 -1.13 6.77 42.00 0.28 -0.85 16 23 C 0.59 14.65 8.07 86.78 0.70 15.35 16 24 N -0.80 -11.16 8.86 -175.62 -1.56 -12.71 16 25 O -0.57 -18.02 14.48 -3.89 -0.06 -18.08 16 26 C -0.12 -6.65 8.20 23.01 0.19 -6.46 16 27 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 28 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 29 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 30 H 0.12 4.82 6.38 -2.91 -0.02 4.80 16 31 H 0.44 16.91 3.21 -94.95 -0.30 16.61 16 32 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.42 3.98 8.19 -92.71 -0.76 3.22 16 35 H 0.42 4.13 8.93 -92.71 -0.83 3.30 16 36 H 0.11 6.74 5.79 -2.91 -0.02 6.72 16 Total: -1.00 -79.69 319.22 0.78 -78.91 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.69 Total: 38.02 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.82 Total: 2.88 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -6.27 Total: -115.72 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.11 Total: -46.20 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -79.69 0.78 -78.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.300 kcal (2) G-P(sol) polarization free energy of solvation -79.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds