Wall clock time and date at job start Fri Apr 10 2020 18:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86811 * 119.99832 * 2 1 4 4 H 1.48500 * 109.46859 * 240.00272 * 3 2 1 5 5 H 1.48504 * 109.46712 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47040 * 120.00204 * 3 2 1 7 7 C 1.37878 * 120.00616 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99838 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.39863 * 66.46222 * 9 7 2 11 11 O 1.42099 * 106.40266 * 293.54549 * 9 7 2 12 12 N 1.65599 * 107.21997 * 180.02562 * 9 7 2 13 13 C 1.38626 * 119.99840 * 65.00431 * 12 9 7 14 14 C 1.39166 * 120.48766 * 180.29904 * 13 12 9 15 15 C 1.39128 * 118.26763 * 180.23293 * 14 13 12 16 16 N 1.38640 * 120.48441 * 179.73736 * 15 14 13 17 17 C 1.46846 * 110.99852 * 303.93943 * 16 15 14 18 18 C 1.53040 * 109.51964 * 174.15855 * 17 16 15 19 19 C 1.53119 * 109.28089 * 59.17912 * 18 17 16 20 20 C 1.53124 * 109.15841 * 302.34776 * 19 18 17 21 21 C 1.46846 * 111.00036 * 179.72790 * 16 15 14 22 22 N 1.33196 * 119.03343 * 359.47358 * 15 14 13 23 23 C 1.31726 * 120.87799 * 0.26939 * 22 15 14 24 24 N 1.31755 * 121.91573 * 359.97438 * 23 22 15 25 25 H 0.96993 * 120.00557 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00028 * 245.00115 * 12 9 7 27 27 H 1.07998 * 120.86499 * 359.97438 * 14 13 12 28 28 H 1.08996 * 109.46231 * 294.17602 * 17 16 15 29 29 H 1.09004 * 109.46418 * 54.14442 * 17 16 15 30 30 H 1.09004 * 109.50602 * 299.23671 * 18 17 16 31 31 H 1.08998 * 109.50366 * 179.12192 * 18 17 16 32 32 H 1.08998 * 109.52394 * 182.44064 * 19 18 17 33 33 H 1.09003 * 109.56984 * 62.28008 * 19 18 17 34 34 H 1.08999 * 109.49853 * 297.70868 * 20 19 18 35 35 H 1.08994 * 109.53481 * 177.61659 * 20 19 18 36 36 H 1.09001 * 109.45990 * 305.85751 * 21 16 15 37 37 H 1.08999 * 109.46398 * 65.83674 * 21 16 15 38 38 H 1.08001 * 119.04550 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7200 -0.0005 10 8 0.4512 -2.7950 -1.2501 11 8 0.4520 -2.7955 1.2494 12 7 2.2486 -3.9353 -0.0005 13 6 3.0917 -4.0994 1.0876 14 6 4.0447 -5.1135 1.0957 15 6 4.8634 -5.2393 2.2136 16 7 5.8246 -6.2367 2.2727 17 6 5.2215 -7.5611 2.0766 18 6 6.3244 -8.6194 2.0027 19 6 7.1366 -8.5949 3.3005 20 6 7.7136 -7.1914 3.5058 21 6 6.5704 -6.1746 3.5362 22 7 4.7138 -4.3843 3.2239 23 6 3.8031 -3.4339 3.1760 24 7 3.0057 -3.2849 2.1377 25 1 -0.4850 0.8399 -0.0004 26 1 2.3175 -4.5324 -0.7618 27 1 4.1434 -5.7878 0.2579 28 1 4.5583 -7.7854 2.9120 29 1 4.6503 -7.5663 1.1482 30 1 6.9800 -8.4035 1.1590 31 1 5.8757 -9.6042 1.8728 32 1 7.9502 -9.3172 3.2349 33 1 6.4902 -8.8494 4.1405 34 1 8.3910 -6.9531 2.6858 35 1 8.2578 -7.1556 4.4494 36 1 6.9789 -5.1726 3.6678 37 1 5.9010 -6.4056 4.3648 38 1 3.7076 -2.7565 4.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:44 Heat of formation + Delta-G solvation = -34.670541 kcal Electronic energy + Delta-G solvation = -23963.281713 eV Core-core repulsion = 20353.270698 eV Total energy + Delta-G solvation = -3610.011015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.02916 -38.97564 -35.69835 -35.21674 -34.17924 -34.03302 -33.05835 -31.45844 -30.99143 -29.88181 -26.12402 -25.18938 -24.37957 -22.80893 -22.25758 -20.05559 -19.26511 -18.37783 -17.97354 -16.62427 -16.38896 -15.73388 -15.35309 -15.24186 -14.78839 -14.73252 -14.54200 -14.36541 -14.10535 -13.75504 -13.55010 -13.47716 -13.32127 -12.45479 -12.08281 -11.74095 -11.48062 -11.33767 -11.16691 -11.11973 -10.91877 -10.81582 -10.73319 -10.59614 -10.44363 -10.34101 -10.21648 -10.15211 -9.20486 -8.95364 -8.86980 -8.62102 -8.32247 -6.68218 -5.26838 1.31233 1.53551 2.04831 3.12264 3.15318 3.21232 3.35921 3.87286 4.13319 4.16451 4.38464 4.52924 4.61336 4.64880 4.67884 4.95858 4.96572 5.10467 5.12875 5.31199 5.35073 5.42446 5.47819 5.51214 5.63954 5.66049 5.69797 5.76908 5.84359 5.93552 6.05888 6.14254 6.41348 6.46301 6.67521 7.03470 7.26320 7.34394 7.64968 7.98528 8.55474 8.91385 10.27148 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.025284 B = 0.003705 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.151399 B = 7555.421552 C = 8165.548146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.135 3.865 3 Si 0.923 3.077 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.993 4.993 8 H 0.100 0.900 9 S 2.696 3.304 10 O -0.997 6.997 11 O -0.970 6.970 12 N -1.036 6.036 13 C 0.458 3.542 14 C -0.292 4.292 15 C 0.370 3.630 16 N -0.473 5.473 17 C 0.059 3.941 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.121 4.121 21 C 0.067 3.933 22 N -0.590 5.590 23 C 0.361 3.639 24 N -0.543 5.543 25 H 0.291 0.709 26 H 0.422 0.578 27 H 0.142 0.858 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -14.397 5.344 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.083 4.083 3 Si 0.747 3.253 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.128 5.128 8 H 0.118 0.882 9 S 2.797 3.203 10 O -0.987 6.987 11 O -0.959 6.959 12 N -0.775 5.775 13 C 0.216 3.784 14 C -0.323 4.323 15 C 0.132 3.868 16 N -0.191 5.191 17 C -0.067 4.067 18 C -0.155 4.155 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.060 4.060 22 N -0.314 5.314 23 C 0.070 3.930 24 N -0.266 5.266 25 H 0.102 0.898 26 H 0.256 0.744 27 H 0.160 0.840 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 12.920 -13.727 5.740 19.706 hybrid contribution 0.615 0.350 -0.614 0.937 sum 13.535 -13.377 5.126 19.708 Atomic orbital electron populations 1.69872 1.06728 1.30841 1.40403 1.24696 0.94459 1.00656 0.88466 0.86163 0.79823 0.79539 0.79776 1.19007 1.20140 1.18751 1.30119 1.05643 1.10541 1.66447 0.88197 1.01296 0.72147 0.73705 0.73158 1.93416 1.72035 1.87333 1.45945 1.93399 1.71510 1.86429 1.44598 1.54498 1.50610 1.49749 1.22596 1.17990 0.86071 0.87897 0.86404 1.21623 1.02797 1.05711 1.02150 1.19667 0.87064 0.91209 0.88874 1.58859 1.21855 1.02963 1.35440 1.22281 0.96313 0.85875 1.02248 1.21626 0.97370 0.97763 0.98756 1.21622 0.99671 0.97227 0.97654 1.21682 0.97658 0.94210 1.02362 1.22001 0.94879 1.00848 0.88278 1.68363 1.25030 1.09418 1.28557 1.24568 0.83707 0.90913 0.93810 1.68238 1.28754 1.28025 1.01590 0.89833 0.74430 0.83974 0.93449 0.89568 0.90724 0.90893 0.91611 0.92050 0.91086 0.91067 0.89284 0.93114 0.78352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.96 13.19 55.43 0.73 -24.23 16 2 C 0.13 3.78 5.46 -17.82 -0.10 3.69 16 3 Si 0.92 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.99 -27.61 9.36 30.60 0.29 -27.33 16 8 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 9 S 2.70 71.80 4.66 -107.50 -0.50 71.29 16 10 O -1.00 -28.66 18.02 -57.17 -1.03 -29.69 16 11 O -0.97 -28.48 16.92 -57.17 -0.97 -29.45 16 12 N -1.04 -20.91 5.84 31.19 0.18 -20.72 16 13 C 0.46 8.94 7.35 -154.71 -1.14 7.80 16 14 C -0.29 -4.58 9.13 -38.91 -0.36 -4.93 16 15 C 0.37 5.57 6.40 -154.69 -0.99 4.58 16 16 N -0.47 -5.72 4.68 -173.13 -0.81 -6.53 16 17 C 0.06 0.57 5.25 -3.83 -0.02 0.55 16 18 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 19 C -0.12 -0.87 6.00 -26.61 -0.16 -1.03 16 20 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 21 C 0.07 0.71 4.67 -3.84 -0.02 0.70 16 22 N -0.59 -9.36 8.84 -13.88 -0.12 -9.48 16 23 C 0.36 6.23 12.28 -92.25 -1.13 5.10 16 24 N -0.54 -11.47 8.52 -13.88 -0.12 -11.58 16 25 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.42 6.71 8.84 -34.47 -0.30 6.41 16 27 H 0.14 1.79 7.23 -52.49 -0.38 1.41 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.80 6.75 -51.93 -0.35 0.45 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 1.05 7.73 -51.93 -0.40 0.65 16 37 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 38 H 0.20 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -36.09 329.46 -11.43 -47.51 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.79 Total: 5.06 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.95 Total: -13.03 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -0.14 Total: -72.55 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -2.00 Total: -59.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 71.80 SS G_CDS: -0.50 Total: 71.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.09 -11.43 -47.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.843 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds