Wall clock time and date at job start Fri Apr 10 2020 18:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86811 * 119.99832 * 2 1 4 4 H 1.48500 * 109.46859 * 240.00272 * 3 2 1 5 5 H 1.48504 * 109.46712 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47040 * 120.00204 * 3 2 1 7 7 C 1.37878 * 120.00616 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99838 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.39863 * 66.46222 * 9 7 2 11 11 O 1.42099 * 106.40266 * 293.54549 * 9 7 2 12 12 N 1.65599 * 107.21997 * 180.02562 * 9 7 2 13 13 C 1.38626 * 119.99840 * 65.00431 * 12 9 7 14 14 C 1.39166 * 120.48766 * 180.29904 * 13 12 9 15 15 C 1.39128 * 118.26763 * 180.23293 * 14 13 12 16 16 N 1.38640 * 120.48441 * 179.73736 * 15 14 13 17 17 C 1.46846 * 110.99852 * 303.93943 * 16 15 14 18 18 C 1.53040 * 109.51964 * 174.15855 * 17 16 15 19 19 C 1.53119 * 109.28089 * 59.17912 * 18 17 16 20 20 C 1.53124 * 109.15841 * 302.34776 * 19 18 17 21 21 C 1.46846 * 111.00036 * 179.72790 * 16 15 14 22 22 N 1.33196 * 119.03343 * 359.47358 * 15 14 13 23 23 C 1.31726 * 120.87799 * 0.26939 * 22 15 14 24 24 N 1.31755 * 121.91573 * 359.97438 * 23 22 15 25 25 H 0.96993 * 120.00557 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00028 * 245.00115 * 12 9 7 27 27 H 1.07998 * 120.86499 * 359.97438 * 14 13 12 28 28 H 1.08996 * 109.46231 * 294.17602 * 17 16 15 29 29 H 1.09004 * 109.46418 * 54.14442 * 17 16 15 30 30 H 1.09004 * 109.50602 * 299.23671 * 18 17 16 31 31 H 1.08998 * 109.50366 * 179.12192 * 18 17 16 32 32 H 1.08998 * 109.52394 * 182.44064 * 19 18 17 33 33 H 1.09003 * 109.56984 * 62.28008 * 19 18 17 34 34 H 1.08999 * 109.49853 * 297.70868 * 20 19 18 35 35 H 1.08994 * 109.53481 * 177.61659 * 20 19 18 36 36 H 1.09001 * 109.45990 * 305.85751 * 21 16 15 37 37 H 1.08999 * 109.46398 * 65.83674 * 21 16 15 38 38 H 1.08001 * 119.04550 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7200 -0.0005 10 8 0.4512 -2.7950 -1.2501 11 8 0.4520 -2.7955 1.2494 12 7 2.2486 -3.9353 -0.0005 13 6 3.0917 -4.0994 1.0876 14 6 4.0447 -5.1135 1.0957 15 6 4.8634 -5.2393 2.2136 16 7 5.8246 -6.2367 2.2727 17 6 5.2215 -7.5611 2.0766 18 6 6.3244 -8.6194 2.0027 19 6 7.1366 -8.5949 3.3005 20 6 7.7136 -7.1914 3.5058 21 6 6.5704 -6.1746 3.5362 22 7 4.7138 -4.3843 3.2239 23 6 3.8031 -3.4339 3.1760 24 7 3.0057 -3.2849 2.1377 25 1 -0.4850 0.8399 -0.0004 26 1 2.3175 -4.5324 -0.7618 27 1 4.1434 -5.7878 0.2579 28 1 4.5583 -7.7854 2.9120 29 1 4.6503 -7.5663 1.1482 30 1 6.9800 -8.4035 1.1590 31 1 5.8757 -9.6042 1.8728 32 1 7.9502 -9.3172 3.2349 33 1 6.4902 -8.8494 4.1405 34 1 8.3910 -6.9531 2.6858 35 1 8.2578 -7.1556 4.4494 36 1 6.9789 -5.1726 3.6678 37 1 5.9010 -6.4056 4.3648 38 1 3.7076 -2.7565 4.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:43 Heat of formation + Delta-G solvation = -61.124246 kcal Electronic energy + Delta-G solvation = -23964.428831 eV Core-core repulsion = 20353.270698 eV Total energy + Delta-G solvation = -3611.158134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.27197 -39.95862 -37.52413 -36.97576 -36.22034 -35.25562 -35.10638 -32.59138 -31.94381 -31.08167 -28.26632 -26.15462 -25.55556 -23.72256 -23.43019 -21.16996 -20.79027 -19.94118 -19.49664 -18.52574 -17.81663 -17.31017 -16.73637 -16.50194 -16.32774 -16.00288 -15.71375 -15.65155 -15.40553 -15.28103 -14.84844 -14.28063 -14.16886 -14.01335 -13.44797 -13.22581 -13.12243 -13.00657 -12.88564 -12.55441 -12.44586 -12.32178 -12.17392 -11.94984 -11.78878 -11.45706 -11.35449 -11.24390 -11.21600 -10.97779 -10.26763 -10.09382 -9.47660 -8.75571 -7.44624 0.01777 0.06521 0.19934 1.32867 1.36236 1.48566 2.14981 2.31627 2.42254 2.59445 2.82689 3.24476 3.38494 3.59924 3.78741 3.92495 3.94460 4.05786 4.12129 4.23758 4.29857 4.38940 4.52440 4.56819 4.64474 4.72170 4.85504 4.92211 4.97205 5.09060 5.21095 5.24157 5.27488 5.33509 5.47841 5.58675 5.77028 5.87584 6.00399 6.30660 6.78639 7.21544 8.22141 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.025284 B = 0.003705 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.151399 B = 7555.421552 C = 8165.548146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.989 3.011 4 H -0.252 1.252 5 H -0.261 1.261 6 H -0.254 1.254 7 C -1.012 5.012 8 H 0.108 0.892 9 S 2.712 3.288 10 O -1.029 7.029 11 O -1.008 7.008 12 N -1.027 6.027 13 C 0.429 3.571 14 C -0.277 4.277 15 C 0.369 3.631 16 N -0.470 5.470 17 C 0.053 3.947 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.115 4.115 21 C 0.065 3.935 22 N -0.583 5.583 23 C 0.354 3.646 24 N -0.593 5.593 25 H 0.300 0.700 26 H 0.439 0.561 27 H 0.174 0.826 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.503 -15.456 5.584 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.184 1.184 6 H -0.178 1.178 7 C -1.146 5.146 8 H 0.126 0.874 9 S 2.813 3.187 10 O -1.020 7.020 11 O -0.998 6.998 12 N -0.772 5.772 13 C 0.190 3.810 14 C -0.308 4.308 15 C 0.130 3.870 16 N -0.188 5.188 17 C -0.072 4.072 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.061 4.061 22 N -0.307 5.307 23 C 0.064 3.936 24 N -0.317 5.317 25 H 0.110 0.890 26 H 0.277 0.723 27 H 0.192 0.808 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 15.555 -14.837 5.979 22.312 hybrid contribution -0.071 0.512 -0.620 0.807 sum 15.484 -14.325 5.358 21.764 Atomic orbital electron populations 1.69954 1.08546 1.32394 1.41604 1.25894 0.95357 1.04934 0.87549 0.85189 0.78819 0.74785 0.80505 1.17601 1.18444 1.17798 1.30431 1.06221 1.11579 1.66383 0.87352 1.00436 0.72337 0.74069 0.71827 1.93361 1.73654 1.88071 1.46884 1.93342 1.73284 1.87236 1.45890 1.53673 1.50351 1.49140 1.24055 1.18215 0.87273 0.89471 0.86086 1.21805 1.01157 1.04628 1.03219 1.20067 0.86996 0.91611 0.88361 1.58952 1.20678 1.03328 1.35834 1.22477 0.97335 0.85033 1.02406 1.21636 0.96641 0.97689 0.99020 1.21639 1.00174 0.96810 0.97442 1.21665 0.96506 0.93963 1.03182 1.22068 0.95481 1.01185 0.87375 1.68465 1.24366 1.09196 1.28683 1.25024 0.83413 0.91542 0.93623 1.68141 1.30631 1.29833 1.03062 0.89033 0.72291 0.80847 0.93812 0.88956 0.90580 0.88991 0.89847 0.91996 0.91155 0.89622 0.90654 0.93701 0.76178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.61 13.19 21.45 0.28 -53.33 16 2 C 0.08 4.26 5.46 84.66 0.46 4.73 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 7 C -1.01 -57.05 9.36 67.73 0.63 -56.42 16 8 H 0.11 5.72 7.81 -2.91 -0.02 5.70 16 9 S 2.71 148.27 4.66 -56.49 -0.26 148.01 16 10 O -1.03 -60.92 18.02 -128.00 -2.31 -63.23 16 11 O -1.01 -61.35 16.92 -128.00 -2.17 -63.51 16 12 N -1.03 -41.82 5.84 -55.22 -0.32 -42.14 16 13 C 0.43 16.70 7.35 132.97 0.98 17.67 16 14 C -0.28 -8.30 9.13 22.71 0.21 -8.10 16 15 C 0.37 10.57 6.40 132.95 0.85 11.42 16 16 N -0.47 -10.36 4.68 -701.66 -3.28 -13.65 16 17 C 0.05 0.89 5.25 86.33 0.45 1.34 16 18 C -0.11 -1.28 6.09 30.65 0.19 -1.10 16 19 C -0.12 -1.32 6.00 30.68 0.18 -1.14 16 20 C -0.12 -1.53 6.09 30.65 0.19 -1.34 16 21 C 0.07 1.28 4.67 86.32 0.40 1.68 16 22 N -0.58 -18.02 8.84 -197.83 -1.75 -19.77 16 23 C 0.35 12.20 12.28 180.92 2.22 14.42 16 24 N -0.59 -25.29 8.52 -197.83 -1.69 -26.97 16 25 H 0.30 16.16 8.31 -92.71 -0.77 15.39 16 26 H 0.44 13.92 8.84 -96.76 -0.86 13.07 16 27 H 0.17 3.92 7.23 -2.91 -0.02 3.90 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 1.44 6.75 -2.38 -0.02 1.43 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.68 7.73 -2.39 -0.02 1.66 16 37 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 38 H 0.22 6.15 8.06 -2.91 -0.02 6.13 16 Total: -1.00 -79.71 329.46 -2.46 -82.17 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.24 Total: 24.88 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 6.77 Total: -16.83 kcal Atomic # 7 Polarization: -149.10 SS G_CDS: -6.76 Total: -155.86 kcal Atomic # 8 Polarization: -122.26 SS G_CDS: -4.47 Total: -126.74 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 148.27 SS G_CDS: -0.26 Total: 148.01 kcal Total: -79.71 -2.46 -82.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.049 kcal (2) G-P(sol) polarization free energy of solvation -79.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds