Wall clock time and date at job start Fri Apr 10 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 119.99893 * 2 1 4 4 C 1.52997 * 109.47139 * 85.00137 * 3 2 1 5 5 C 1.53002 * 109.47446 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47522 * 179.97438 * 5 4 3 7 7 O 1.21260 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.47168 * 120.00185 * 179.97438 * 6 5 4 9 9 C 1.40296 * 120.58582 * 180.02562 * 8 6 5 10 10 C 1.38287 * 118.26435 * 179.97438 * 9 8 6 11 11 C 1.38394 * 119.32761 * 0.28025 * 10 9 8 12 12 N 1.31947 * 121.14567 * 359.43804 * 11 10 9 13 13 C 1.31652 * 121.90294 * 0.55011 * 12 11 10 14 14 S 1.65601 * 119.99946 * 180.02562 * 2 1 3 15 15 O 1.42091 * 106.40462 * 23.54143 * 14 2 1 16 16 O 1.42104 * 106.40339 * 156.45971 * 14 2 1 17 17 C 1.76202 * 107.21768 * 269.99539 * 14 2 1 18 18 H 1.07997 * 119.99856 * 0.02562 * 17 14 2 19 19 C 1.37877 * 119.99790 * 179.97438 * 17 14 2 20 20 N 1.31513 * 120.00317 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99776 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47025 * 90.00739 * 21 19 17 23 23 H 1.48504 * 109.46951 * 210.00635 * 21 19 17 24 24 H 1.48497 * 109.47016 * 330.00488 * 21 19 17 25 25 H 1.09005 * 109.47042 * 90.00216 * 1 2 3 26 26 H 1.09002 * 109.46983 * 209.99498 * 1 2 3 27 27 H 1.08994 * 109.47308 * 329.99589 * 1 2 3 28 28 H 1.09002 * 109.47544 * 324.99870 * 3 2 1 29 29 H 1.09005 * 109.47323 * 204.99682 * 3 2 1 30 30 H 1.08997 * 109.47179 * 59.99953 * 4 3 2 31 31 H 1.08995 * 109.47348 * 299.99725 * 4 3 2 32 32 H 1.08997 * 109.47010 * 59.99800 * 5 4 3 33 33 H 1.09008 * 109.46857 * 300.00061 * 5 4 3 34 34 H 1.08003 * 120.86661 * 359.95614 * 9 8 6 35 35 H 1.08002 * 120.33221 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.42558 * 179.70361 * 11 10 9 37 37 H 1.08004 * 119.73186 * 179.72360 * 13 12 11 38 38 H 0.96999 * 119.99898 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3435 1.7732 1.4370 5 6 3.1080 3.0986 1.4370 6 6 3.2514 3.5958 2.8523 7 8 2.7883 2.9533 3.7705 8 6 3.9544 4.8607 3.1202 9 6 4.0955 5.3348 4.4331 10 6 4.7653 6.5285 4.6298 11 6 5.2650 7.2136 3.5361 12 7 5.1226 6.7420 2.3120 13 6 4.4940 5.6106 2.0711 14 16 2.2929 -1.4342 -0.0006 15 8 1.4114 -2.4062 -0.5455 16 8 3.5759 -1.1566 -0.5450 17 6 2.5538 -1.8865 1.6822 18 1 2.1868 -1.2518 2.4751 19 6 3.2257 -3.0514 1.9867 20 7 3.6723 -3.8246 1.0211 21 14 3.5017 -3.5313 3.7708 22 1 2.3622 -4.3583 4.2429 23 1 4.7601 -4.3116 3.8845 24 1 3.6022 -2.3057 4.6032 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6501 2.0043 -0.5895 29 1 3.1857 1.1177 -0.4343 30 1 2.8909 1.0377 2.0264 31 1 1.3554 1.9243 1.8713 32 1 2.5602 3.8339 0.8477 33 1 4.0963 2.9480 1.0025 34 1 3.6912 4.7820 5.2682 35 1 4.8928 6.9246 5.6264 36 1 5.7841 8.1485 3.6875 37 1 4.3939 5.2594 1.0547 38 1 4.1452 -4.6439 1.2354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:50 Heat of formation + Delta-G solvation = -96.444108 kcal Electronic energy + Delta-G solvation = -23317.002156 eV Core-core repulsion = 19672.019687 eV Total energy + Delta-G solvation = -3644.982469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73282 -39.02592 -36.21135 -35.24543 -33.92859 -33.14607 -32.88476 -32.83767 -31.67339 -27.72674 -26.09196 -25.40661 -24.13441 -23.53634 -21.44488 -19.97196 -18.60310 -17.71175 -17.31824 -16.64568 -16.40776 -16.30317 -15.64187 -15.21670 -14.97898 -14.70019 -14.23860 -14.17938 -14.14119 -13.46526 -13.34688 -13.33481 -13.02223 -12.57579 -12.08273 -11.97750 -11.91697 -11.58901 -11.40113 -11.18564 -11.13035 -10.60393 -10.50512 -10.27412 -10.26125 -10.20935 -10.10905 -10.00788 -9.64466 -9.53720 -9.20963 -8.88156 -8.17488 -6.65944 -5.27400 0.20831 0.86611 2.22261 2.30282 3.09880 3.16410 3.24805 3.49211 3.69739 4.07935 4.11409 4.41642 4.53689 4.56069 4.60503 4.67866 4.92465 5.03214 5.13904 5.14261 5.33497 5.57486 5.61643 5.66580 5.72050 5.76852 5.84991 5.91205 5.98282 6.17803 6.20714 6.26217 6.31409 6.47125 6.70792 6.83149 7.36742 7.37312 7.52110 7.62102 8.03407 8.93763 10.27512 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003603 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.402698 B = 7770.453204 C = 8753.237547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -1.017 6.017 3 C 0.124 3.876 4 C -0.137 4.137 5 C -0.165 4.165 6 C 0.398 3.602 7 O -0.440 6.440 8 C -0.217 4.217 9 C -0.022 4.022 10 C -0.185 4.185 11 C 0.122 3.878 12 N -0.492 5.492 13 C 0.147 3.853 14 S 2.714 3.286 15 O -1.004 7.004 16 O -1.004 7.004 17 C -1.018 5.018 18 H 0.103 0.897 19 C 0.134 3.866 20 N -0.847 5.847 21 Si 0.917 3.083 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.262 1.262 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 20.337 4.791 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.852 5.852 3 C -0.003 4.003 4 C -0.176 4.176 5 C -0.203 4.203 6 C 0.273 3.727 7 O -0.313 6.313 8 C -0.220 4.220 9 C -0.048 4.048 10 C -0.205 4.205 11 C -0.034 4.034 12 N -0.201 5.201 13 C -0.011 4.011 14 S 2.815 3.185 15 O -0.995 6.995 16 O -0.995 6.995 17 C -1.152 5.152 18 H 0.121 0.879 19 C -0.083 4.083 20 N -0.477 5.477 21 Si 0.741 3.259 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.186 1.186 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.186 0.814 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.365 19.859 3.693 20.203 hybrid contribution -0.206 -0.529 2.395 2.461 sum 0.159 19.330 6.088 20.267 Atomic orbital electron populations 1.21231 0.80169 1.02244 1.00697 1.57874 1.14153 1.22006 1.91118 1.21140 0.97796 0.85971 0.95375 1.21965 1.01161 0.95476 0.99046 1.22027 1.03921 0.99611 0.94716 1.22461 0.75415 0.83001 0.91792 1.90567 1.38262 1.54896 1.47585 1.21738 1.05122 0.99708 0.95418 1.21941 0.92006 0.94008 0.96821 1.22175 1.00718 0.96460 1.01144 1.23052 0.94005 0.98686 0.87699 1.67753 1.15108 1.13413 1.23808 1.23277 0.89579 0.88898 0.99387 1.00542 0.71753 0.69692 0.76553 1.93353 1.67258 1.57879 1.80988 1.93336 1.40992 1.84100 1.81048 1.30642 1.49977 1.16797 1.17751 0.87869 1.24727 0.90118 0.93401 1.00086 1.69897 1.31235 1.12793 1.33769 0.86219 0.78397 0.79255 0.82077 1.19188 1.20009 1.18573 0.93780 0.91088 0.92435 0.91542 0.89112 0.89739 0.91178 0.88113 0.87552 0.83753 0.84145 0.82297 0.81435 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.31 59.84 0.62 2.35 16 2 N -1.02 -20.42 3.18 -121.76 -0.39 -20.81 16 3 C 0.12 2.00 5.66 -4.05 -0.02 1.97 16 4 C -0.14 -2.07 4.83 -26.73 -0.13 -2.20 16 5 C -0.16 -1.79 4.34 -27.89 -0.12 -1.91 16 6 C 0.40 4.92 7.12 -30.69 -0.22 4.70 16 7 O -0.44 -7.05 16.05 5.57 0.09 -6.96 16 8 C -0.22 -2.26 5.89 -104.92 -0.62 -2.88 16 9 C -0.02 -0.21 9.72 -38.79 -0.38 -0.59 16 10 C -0.19 -1.36 10.10 -39.51 -0.40 -1.76 16 11 C 0.12 0.94 11.17 -17.44 -0.19 0.75 16 12 N -0.49 -4.83 10.34 -12.83 -0.13 -4.96 16 13 C 0.15 1.36 10.65 -17.05 -0.18 1.18 16 14 S 2.71 72.47 4.93 -107.50 -0.53 71.94 16 15 O -1.00 -29.59 17.09 -57.18 -0.98 -30.56 16 16 O -1.00 -28.94 16.57 -57.18 -0.95 -29.89 16 17 C -1.02 -28.32 9.75 30.60 0.30 -28.02 16 18 H 0.10 2.68 7.81 -52.49 -0.41 2.27 16 19 C 0.13 3.80 5.46 -17.82 -0.10 3.70 16 20 N -0.85 -25.15 13.19 55.43 0.73 -24.42 16 21 Si 0.92 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.26 7.79 -51.93 -0.40 0.86 16 27 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 29 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 30 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 31 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.11 1.01 8.10 -51.92 -0.42 0.59 16 34 H 0.14 1.34 7.73 -52.48 -0.41 0.93 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.17 1.13 7.08 -52.48 -0.37 0.76 16 38 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -37.85 345.68 -8.29 -46.14 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.88 Total: 0.99 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.44 Total: -22.72 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.21 Total: -50.19 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -1.84 Total: -67.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 72.47 SS G_CDS: -0.53 Total: 71.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.85 -8.29 -46.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.308 kcal (2) G-P(sol) polarization free energy of solvation -37.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds