Wall clock time and date at job start Fri Apr 10 2020 18:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 119.99893 * 2 1 4 4 C 1.52997 * 109.47139 * 85.00137 * 3 2 1 5 5 C 1.53002 * 109.47446 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47522 * 179.97438 * 5 4 3 7 7 O 1.21260 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.47168 * 120.00185 * 179.97438 * 6 5 4 9 9 C 1.40296 * 120.58582 * 180.02562 * 8 6 5 10 10 C 1.38287 * 118.26435 * 179.97438 * 9 8 6 11 11 C 1.38394 * 119.32761 * 0.28025 * 10 9 8 12 12 N 1.31947 * 121.14567 * 359.43804 * 11 10 9 13 13 C 1.31652 * 121.90294 * 0.55011 * 12 11 10 14 14 S 1.65601 * 119.99946 * 180.02562 * 2 1 3 15 15 O 1.42091 * 106.40462 * 23.54143 * 14 2 1 16 16 O 1.42104 * 106.40339 * 156.45971 * 14 2 1 17 17 C 1.76202 * 107.21768 * 269.99539 * 14 2 1 18 18 H 1.07997 * 119.99856 * 0.02562 * 17 14 2 19 19 C 1.37877 * 119.99790 * 179.97438 * 17 14 2 20 20 N 1.31513 * 120.00317 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99776 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47025 * 90.00739 * 21 19 17 23 23 H 1.48504 * 109.46951 * 210.00635 * 21 19 17 24 24 H 1.48497 * 109.47016 * 330.00488 * 21 19 17 25 25 H 1.09005 * 109.47042 * 90.00216 * 1 2 3 26 26 H 1.09002 * 109.46983 * 209.99498 * 1 2 3 27 27 H 1.08994 * 109.47308 * 329.99589 * 1 2 3 28 28 H 1.09002 * 109.47544 * 324.99870 * 3 2 1 29 29 H 1.09005 * 109.47323 * 204.99682 * 3 2 1 30 30 H 1.08997 * 109.47179 * 59.99953 * 4 3 2 31 31 H 1.08995 * 109.47348 * 299.99725 * 4 3 2 32 32 H 1.08997 * 109.47010 * 59.99800 * 5 4 3 33 33 H 1.09008 * 109.46857 * 300.00061 * 5 4 3 34 34 H 1.08003 * 120.86661 * 359.95614 * 9 8 6 35 35 H 1.08002 * 120.33221 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.42558 * 179.70361 * 11 10 9 37 37 H 1.08004 * 119.73186 * 179.72360 * 13 12 11 38 38 H 0.96999 * 119.99898 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3435 1.7732 1.4370 5 6 3.1080 3.0986 1.4370 6 6 3.2514 3.5958 2.8523 7 8 2.7883 2.9533 3.7705 8 6 3.9544 4.8607 3.1202 9 6 4.0955 5.3348 4.4331 10 6 4.7653 6.5285 4.6298 11 6 5.2650 7.2136 3.5361 12 7 5.1226 6.7420 2.3120 13 6 4.4940 5.6106 2.0711 14 16 2.2929 -1.4342 -0.0006 15 8 1.4114 -2.4062 -0.5455 16 8 3.5759 -1.1566 -0.5450 17 6 2.5538 -1.8865 1.6822 18 1 2.1868 -1.2518 2.4751 19 6 3.2257 -3.0514 1.9867 20 7 3.6723 -3.8246 1.0211 21 14 3.5017 -3.5313 3.7708 22 1 2.3622 -4.3583 4.2429 23 1 4.7601 -4.3116 3.8845 24 1 3.6022 -2.3057 4.6032 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6501 2.0043 -0.5895 29 1 3.1857 1.1177 -0.4343 30 1 2.8909 1.0377 2.0264 31 1 1.3554 1.9243 1.8713 32 1 2.5602 3.8339 0.8477 33 1 4.0963 2.9480 1.0025 34 1 3.6912 4.7820 5.2682 35 1 4.8928 6.9246 5.6264 36 1 5.7841 8.1485 3.6875 37 1 4.3939 5.2594 1.0547 38 1 4.1452 -4.6439 1.2354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:47 Heat of formation + Delta-G solvation = -125.259304 kcal Electronic energy + Delta-G solvation = -23318.251677 eV Core-core repulsion = 19672.019687 eV Total energy + Delta-G solvation = -3646.231990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48349 -39.92293 -37.66511 -37.38158 -36.12811 -35.19519 -34.06881 -33.52970 -32.48490 -28.85408 -28.26422 -26.55602 -25.03189 -24.35590 -22.65045 -20.87757 -20.60610 -19.15123 -18.41633 -18.26232 -17.48336 -17.16238 -17.08425 -16.77731 -16.48778 -16.03480 -15.63099 -15.25971 -15.09071 -14.82386 -14.66270 -14.39394 -14.13527 -13.98464 -13.60752 -13.26987 -13.19468 -13.09186 -13.03540 -12.83200 -12.55075 -12.48178 -12.35786 -12.28744 -12.01078 -11.47785 -11.27141 -11.04586 -10.96767 -10.92837 -10.43063 -10.18785 -9.76482 -8.75649 -7.47906 -0.51449 0.22186 0.33075 1.29174 1.29371 1.38717 1.45656 2.17770 2.55675 2.77247 2.82954 2.96863 3.52936 3.76688 3.79040 3.86590 3.96972 3.98594 4.05846 4.19034 4.29082 4.37390 4.44205 4.64362 4.68552 4.73164 4.77123 4.80389 4.89637 4.98487 5.01412 5.03131 5.18707 5.26074 5.37989 5.46416 5.60670 5.90617 6.04828 6.47969 6.78194 6.87653 8.19321 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003603 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.402698 B = 7770.453204 C = 8753.237547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.014 6.014 3 C 0.116 3.884 4 C -0.134 4.134 5 C -0.161 4.161 6 C 0.401 3.599 7 O -0.490 6.490 8 C -0.235 4.235 9 C -0.038 4.038 10 C -0.179 4.179 11 C 0.123 3.877 12 N -0.514 5.514 13 C 0.149 3.851 14 S 2.719 3.281 15 O -1.042 7.042 16 O -1.037 7.037 17 C -1.039 5.039 18 H 0.111 0.889 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.981 3.019 22 H -0.252 1.252 23 H -0.258 1.258 24 H -0.257 1.257 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.170 0.830 36 H 0.191 0.809 37 H 0.191 0.809 38 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 23.089 5.581 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.853 5.853 3 C -0.009 4.009 4 C -0.173 4.173 5 C -0.198 4.198 6 C 0.281 3.719 7 O -0.367 6.367 8 C -0.238 4.238 9 C -0.064 4.064 10 C -0.198 4.198 11 C -0.032 4.032 12 N -0.223 5.223 13 C -0.009 4.009 14 S 2.820 3.180 15 O -1.033 7.033 16 O -1.027 7.027 17 C -1.172 5.172 18 H 0.129 0.871 19 C -0.138 4.138 20 N -0.524 5.524 21 Si 0.800 3.200 22 H -0.176 1.176 23 H -0.182 1.182 24 H -0.181 1.181 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.188 0.812 36 H 0.208 0.792 37 H 0.208 0.792 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.357 22.625 4.459 23.063 hybrid contribution -0.219 -1.219 2.123 2.458 sum 0.138 21.405 6.582 22.395 Atomic orbital electron populations 1.21528 0.77925 1.03468 1.02279 1.57384 1.15525 1.21348 1.90993 1.21498 0.97585 0.85074 0.96741 1.21850 1.01342 0.96600 0.97513 1.22088 1.04787 0.98249 0.94713 1.22829 0.74148 0.83142 0.91802 1.90554 1.40810 1.56475 1.48905 1.21626 1.06484 0.99379 0.96362 1.22114 0.92641 0.95036 0.96561 1.22475 0.99387 0.95313 1.02645 1.23644 0.93025 0.99455 0.87098 1.67835 1.15776 1.13734 1.24956 1.23595 0.88744 0.88530 1.00037 1.00002 0.71251 0.70664 0.76087 1.93291 1.67873 1.60582 1.81512 1.93279 1.42949 1.84973 1.81467 1.31009 1.50006 1.17316 1.18857 0.87078 1.25895 0.89530 0.93291 1.05126 1.69975 1.32421 1.13738 1.36291 0.85258 0.79439 0.79375 0.75931 1.17642 1.18236 1.18062 0.92049 0.92873 0.88254 0.86450 0.90471 0.94119 0.90915 0.83704 0.86021 0.84379 0.81227 0.79177 0.79237 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.99 10.31 127.77 1.32 4.30 16 2 N -1.01 -40.22 3.18 -539.14 -1.72 -41.93 16 3 C 0.12 3.55 5.66 86.38 0.49 4.04 16 4 C -0.13 -3.92 4.83 30.59 0.15 -3.78 16 5 C -0.16 -3.17 4.34 29.85 0.13 -3.04 16 6 C 0.40 9.67 7.12 28.03 0.20 9.87 16 7 O -0.49 -16.08 16.05 -2.97 -0.05 -16.13 16 8 C -0.24 -4.62 5.89 -20.06 -0.12 -4.74 16 9 C -0.04 -0.68 9.72 22.78 0.22 -0.46 16 10 C -0.18 -2.20 10.10 22.32 0.23 -1.98 16 11 C 0.12 1.54 11.17 84.71 0.95 2.49 16 12 N -0.51 -8.78 10.34 -194.51 -2.01 -10.79 16 13 C 0.15 2.41 10.65 85.10 0.91 3.32 16 14 S 2.72 149.06 4.93 -56.49 -0.28 148.78 16 15 O -1.04 -63.38 17.09 -128.00 -2.19 -65.56 16 16 O -1.04 -61.68 16.57 -128.00 -2.12 -63.80 16 17 C -1.04 -59.28 9.75 67.73 0.66 -58.62 16 18 H 0.11 5.93 7.81 -2.91 -0.02 5.91 16 19 C 0.07 4.28 5.46 84.65 0.46 4.74 16 20 N -0.89 -54.40 13.19 21.45 0.28 -54.12 16 21 Si 0.98 43.33 29.54 68.60 2.03 45.35 16 22 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.05 1.89 7.79 -2.39 -0.02 1.87 16 27 H 0.10 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.12 2.44 8.11 -2.39 -0.02 2.42 16 29 H 0.08 2.59 6.91 -2.38 -0.02 2.57 16 30 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 31 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 32 H 0.15 1.58 8.10 -2.39 -0.02 1.57 16 33 H 0.12 2.06 8.10 -2.38 -0.02 2.04 16 34 H 0.14 2.58 7.73 -2.91 -0.02 2.56 16 35 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.19 1.97 7.08 -2.91 -0.02 1.95 16 38 H 0.30 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -86.54 345.68 0.60 -85.94 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.07 Total: 16.10 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 5.59 Total: -43.85 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -3.45 Total: -106.84 kcal Atomic # 8 Polarization: -141.13 SS G_CDS: -4.36 Total: -145.49 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 149.06 SS G_CDS: -0.28 Total: 148.78 kcal Total: -86.54 0.60 -85.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.318 kcal (2) G-P(sol) polarization free energy of solvation -86.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds