Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46493 * 120.00352 * 2 1 4 4 C 1.34776 * 119.99552 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00294 * 0.02562 * 4 2 1 6 6 C 1.50704 * 119.99804 * 179.97438 * 4 2 1 7 7 C 1.50697 * 109.46972 * 180.02562 * 6 4 2 8 8 C 1.38127 * 120.03877 * 265.00178 * 7 6 4 9 9 C 1.38264 * 120.07625 * 179.97438 * 8 7 6 10 10 C 1.38301 * 120.14902 * 0.04567 * 9 8 7 11 11 C 1.38083 * 120.07650 * 359.97438 * 10 9 8 12 12 C 1.38885 * 120.04079 * 84.72739 * 7 6 4 13 13 N 1.39683 * 120.07383 * 0.02562 * 12 7 6 14 14 S 1.65592 * 120.00076 * 146.46363 * 13 12 7 15 15 O 1.42104 * 106.40213 * 181.25341 * 14 13 12 16 16 O 1.42107 * 106.40307 * 314.17281 * 14 13 12 17 17 C 1.76200 * 107.22259 * 67.71321 * 14 13 12 18 18 H 1.08004 * 119.99498 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00399 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99508 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00141 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47234 * 89.99555 * 21 19 17 23 23 H 1.48496 * 109.47018 * 210.00178 * 21 19 17 24 24 H 1.48501 * 109.46912 * 329.99725 * 21 19 17 25 25 H 1.08999 * 109.47185 * 269.99725 * 1 2 3 26 26 H 1.08996 * 109.46831 * 29.99703 * 1 2 3 27 27 H 1.09001 * 109.47290 * 149.99580 * 1 2 3 28 28 H 1.09000 * 109.47315 * 270.00104 * 3 2 1 29 29 H 1.09010 * 109.46602 * 30.00143 * 3 2 1 30 30 H 1.09003 * 109.47404 * 149.99412 * 3 2 1 31 31 H 1.08993 * 109.47282 * 300.00241 * 6 4 2 32 32 H 1.09001 * 109.46403 * 60.00453 * 6 4 2 33 33 H 1.08004 * 119.95995 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.92410 * 180.02562 * 9 8 7 35 35 H 1.08010 * 119.96156 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.03920 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99774 * 326.46210 * 13 12 7 38 38 H 0.97006 * 119.99448 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6459 -1.1673 -0.0001 7 6 4.1481 -2.5881 0.0001 8 6 4.4773 -3.2051 1.1913 9 6 4.9376 -4.5088 1.1923 10 6 5.0711 -5.1993 0.0015 11 6 4.7443 -4.5885 -1.1930 12 6 4.2752 -3.2808 -1.1970 13 7 3.9384 -2.6617 -2.4030 14 16 4.7759 -3.0278 -3.7838 15 8 4.2207 -2.2232 -4.8152 16 8 6.1535 -3.0038 -3.4359 17 6 4.3962 -4.6980 -4.1970 18 1 3.7224 -5.2684 -3.5748 19 6 4.9601 -5.2773 -5.3140 20 7 5.7810 -4.5828 -6.0713 21 14 4.5569 -7.0477 -5.7523 22 1 3.3681 -7.0791 -6.6416 23 1 5.7147 -7.6604 -6.4517 24 1 4.2675 -7.8112 -4.5119 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 2.3793 1.5833 -1.0277 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5139 31 1 4.0089 -0.6541 -0.8904 32 1 4.0095 -0.6529 0.8895 33 1 4.3749 -2.6684 2.1229 34 1 5.1938 -4.9889 2.1252 35 1 5.4314 -6.2175 0.0058 36 1 4.8484 -5.1284 -2.1225 37 1 3.2138 -2.0175 -2.4317 38 1 6.1774 -4.9902 -6.8573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -94.854839 kcal Electronic energy + Delta-G solvation = -24406.466172 eV Core-core repulsion = 20761.552619 eV Total energy + Delta-G solvation = -3644.913553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.17181 -38.71534 -35.54907 -35.35404 -34.38535 -34.09294 -33.17276 -32.55180 -29.15309 -28.37051 -27.21581 -26.29456 -25.41170 -22.20704 -21.31630 -19.30201 -18.87977 -17.76503 -17.22055 -17.01874 -16.27708 -16.18987 -15.87196 -15.28043 -14.84554 -14.50086 -14.02266 -13.93815 -13.56060 -13.35435 -13.24867 -12.85811 -12.78439 -12.75373 -12.34441 -12.13357 -12.05689 -11.93267 -11.53376 -11.24143 -11.03523 -10.84320 -10.61978 -10.59885 -10.42177 -10.31340 -10.00021 -9.82978 -9.28694 -8.88216 -8.80034 -8.35128 -7.58608 -6.77181 -5.40174 1.76233 1.90967 2.15391 2.64810 2.95711 3.05600 3.12422 3.19379 4.01326 4.18284 4.55181 4.58522 4.66210 4.84106 4.91157 5.02945 5.13038 5.25331 5.39709 5.41757 5.47548 5.51383 5.54951 5.63631 5.70213 5.79835 5.98884 6.11231 6.30593 6.34853 6.46951 6.67825 6.80176 6.99391 7.08483 7.22175 7.24738 7.40684 7.81290 7.88518 8.17416 8.80673 10.16903 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.005068 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.013204 B = 5523.759660 C = 6266.687740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.629 5.629 3 C 0.075 3.925 4 C 0.509 3.491 5 O -0.520 6.520 6 C -0.096 4.096 7 C -0.114 4.114 8 C -0.086 4.086 9 C -0.155 4.155 10 C -0.085 4.085 11 C -0.168 4.168 12 C 0.213 3.787 13 N -1.069 6.069 14 S 2.701 3.299 15 O -0.999 6.999 16 O -0.989 6.989 17 C -1.021 5.021 18 H 0.111 0.889 19 C 0.134 3.866 20 N -0.842 5.842 21 Si 0.922 3.078 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.260 1.260 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.161 0.839 37 H 0.408 0.592 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 7.528 13.860 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.365 5.365 3 C -0.068 4.068 4 C 0.297 3.703 5 O -0.395 6.395 6 C -0.136 4.136 7 C -0.119 4.119 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.104 4.104 11 C -0.189 4.189 12 C 0.114 3.886 13 N -0.810 5.810 14 S 2.802 3.198 15 O -0.990 6.990 16 O -0.979 6.979 17 C -1.154 5.154 18 H 0.129 0.871 19 C -0.084 4.084 20 N -0.471 5.471 21 Si 0.746 3.254 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.184 1.184 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.094 7.538 13.161 16.000 hybrid contribution -0.890 -0.890 -0.226 1.279 sum -5.984 6.648 12.935 15.726 Atomic orbital electron populations 1.21616 0.79332 1.03227 1.01562 1.47803 1.07064 1.06462 1.75144 1.21859 0.97359 0.85254 1.02347 1.20826 0.90256 0.83168 0.76052 1.90741 1.70104 1.30731 1.47896 1.20582 0.91621 0.96443 1.04972 1.18994 1.05579 0.94297 0.93003 1.20636 0.98740 0.95105 0.96030 1.20909 1.03690 0.95018 0.97833 1.20924 0.98100 0.99605 0.91787 1.21906 1.02230 0.93211 1.01512 1.17173 0.95273 0.90997 0.85167 1.54250 1.49132 1.54474 1.23107 1.01033 0.72526 0.76622 0.69605 1.93390 1.79616 1.72205 1.53748 1.93409 1.32680 1.89042 1.82744 1.30554 1.41688 1.22246 1.20900 0.87101 1.24754 0.90431 1.00501 0.92750 1.69891 1.24366 1.38515 1.14337 0.86122 0.78861 0.80935 0.79510 1.19125 1.19886 1.18351 0.92994 0.91346 0.90409 0.92148 0.91010 0.90696 0.88068 0.87906 0.86615 0.86501 0.85882 0.82201 0.75975 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.44 59.85 0.62 1.45 16 2 N -0.63 -7.02 3.27 -189.51 -0.62 -7.64 16 3 C 0.08 0.55 10.24 59.84 0.61 1.16 16 4 C 0.51 7.44 7.34 -10.98 -0.08 7.36 16 5 O -0.52 -9.70 15.61 5.55 0.09 -9.61 16 6 C -0.10 -1.31 3.79 -29.03 -0.11 -1.42 16 7 C -0.11 -1.96 4.39 -104.42 -0.46 -2.41 16 8 C -0.09 -1.31 9.68 -39.61 -0.38 -1.69 16 9 C -0.16 -2.34 10.04 -39.55 -0.40 -2.74 16 10 C -0.09 -1.47 10.04 -39.62 -0.40 -1.86 16 11 C -0.17 -3.49 8.95 -39.38 -0.35 -3.84 16 12 C 0.21 4.37 6.17 -83.79 -0.52 3.85 16 13 N -1.07 -23.11 5.27 32.41 0.17 -22.94 16 14 S 2.70 72.34 4.63 -107.50 -0.50 71.85 16 15 O -1.00 -29.22 18.02 -57.17 -1.03 -30.25 16 16 O -0.99 -28.77 17.44 -57.17 -1.00 -29.77 16 17 C -1.02 -27.79 7.59 30.60 0.23 -27.55 16 18 H 0.11 2.79 6.87 -52.48 -0.36 2.43 16 19 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 20 N -0.84 -24.35 13.19 55.43 0.73 -23.61 16 21 Si 0.92 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 27 H 0.08 0.91 7.42 -51.93 -0.39 0.53 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.37 8.07 -51.92 -0.42 -0.05 16 30 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 31 H 0.10 1.33 7.39 -51.93 -0.38 0.94 16 32 H 0.10 1.02 7.31 -51.93 -0.38 0.64 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.16 3.60 4.47 -52.49 -0.23 3.36 16 37 H 0.41 7.91 7.74 -34.47 -0.27 7.64 16 38 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -37.40 334.97 -7.89 -45.28 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.43 Total: 10.42 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -1.32 Total: -24.10 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.28 Total: -54.20 kcal Atomic # 8 Polarization: -67.69 SS G_CDS: -1.94 Total: -69.63 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 72.34 SS G_CDS: -0.50 Total: 71.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.40 -7.89 -45.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.571 kcal (2) G-P(sol) polarization free energy of solvation -37.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds