Wall clock time and date at job start Fri Apr 10 2020 18:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46493 * 120.00352 * 2 1 4 4 C 1.34776 * 119.99552 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00294 * 0.02562 * 4 2 1 6 6 C 1.50704 * 119.99804 * 179.97438 * 4 2 1 7 7 C 1.50697 * 109.46972 * 180.02562 * 6 4 2 8 8 C 1.38127 * 120.03877 * 265.00178 * 7 6 4 9 9 C 1.38264 * 120.07625 * 179.97438 * 8 7 6 10 10 C 1.38301 * 120.14902 * 0.04567 * 9 8 7 11 11 C 1.38083 * 120.07650 * 359.97438 * 10 9 8 12 12 C 1.38885 * 120.04079 * 84.72739 * 7 6 4 13 13 N 1.39683 * 120.07383 * 0.02562 * 12 7 6 14 14 S 1.65592 * 120.00076 * 146.46363 * 13 12 7 15 15 O 1.42104 * 106.40213 * 181.25341 * 14 13 12 16 16 O 1.42107 * 106.40307 * 314.17281 * 14 13 12 17 17 C 1.76200 * 107.22259 * 67.71321 * 14 13 12 18 18 H 1.08004 * 119.99498 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00399 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99508 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00141 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47234 * 89.99555 * 21 19 17 23 23 H 1.48496 * 109.47018 * 210.00178 * 21 19 17 24 24 H 1.48501 * 109.46912 * 329.99725 * 21 19 17 25 25 H 1.08999 * 109.47185 * 269.99725 * 1 2 3 26 26 H 1.08996 * 109.46831 * 29.99703 * 1 2 3 27 27 H 1.09001 * 109.47290 * 149.99580 * 1 2 3 28 28 H 1.09000 * 109.47315 * 270.00104 * 3 2 1 29 29 H 1.09010 * 109.46602 * 30.00143 * 3 2 1 30 30 H 1.09003 * 109.47404 * 149.99412 * 3 2 1 31 31 H 1.08993 * 109.47282 * 300.00241 * 6 4 2 32 32 H 1.09001 * 109.46403 * 60.00453 * 6 4 2 33 33 H 1.08004 * 119.95995 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.92410 * 180.02562 * 9 8 7 35 35 H 1.08010 * 119.96156 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.03920 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99774 * 326.46210 * 13 12 7 38 38 H 0.97006 * 119.99448 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6459 -1.1673 -0.0001 7 6 4.1481 -2.5881 0.0001 8 6 4.4773 -3.2051 1.1913 9 6 4.9376 -4.5088 1.1923 10 6 5.0711 -5.1993 0.0015 11 6 4.7443 -4.5885 -1.1930 12 6 4.2752 -3.2808 -1.1970 13 7 3.9384 -2.6617 -2.4030 14 16 4.7759 -3.0278 -3.7838 15 8 4.2207 -2.2232 -4.8152 16 8 6.1535 -3.0038 -3.4359 17 6 4.3962 -4.6980 -4.1970 18 1 3.7224 -5.2684 -3.5748 19 6 4.9601 -5.2773 -5.3140 20 7 5.7810 -4.5828 -6.0713 21 14 4.5569 -7.0477 -5.7523 22 1 3.3681 -7.0791 -6.6416 23 1 5.7147 -7.6604 -6.4517 24 1 4.2675 -7.8112 -4.5119 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 2.3793 1.5833 -1.0277 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5139 31 1 4.0089 -0.6541 -0.8904 32 1 4.0095 -0.6529 0.8895 33 1 4.3749 -2.6684 2.1229 34 1 5.1938 -4.9889 2.1252 35 1 5.4314 -6.2175 0.0058 36 1 4.8484 -5.1284 -2.1225 37 1 3.2138 -2.0175 -2.4317 38 1 6.1774 -4.9902 -6.8573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:09 Heat of formation + Delta-G solvation = -124.320459 kcal Electronic energy + Delta-G solvation = -24407.743897 eV Core-core repulsion = 20761.552619 eV Total energy + Delta-G solvation = -3646.191278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32197 -39.95738 -37.56044 -36.51233 -36.32380 -35.92554 -35.24313 -33.77488 -30.39103 -29.48184 -28.39678 -28.12480 -26.34523 -23.64589 -22.60749 -20.94151 -20.25016 -19.67255 -18.72295 -18.27357 -18.02765 -17.35203 -17.02716 -16.82183 -16.20661 -16.14459 -15.82647 -15.68412 -14.80746 -14.61082 -14.33032 -14.11304 -14.02130 -13.78158 -13.50764 -13.40136 -13.32304 -13.07767 -12.99043 -12.88843 -12.80073 -12.67184 -12.58462 -12.33081 -12.23998 -12.07342 -11.54596 -11.26775 -10.96557 -10.95915 -9.68363 -9.65266 -9.06210 -8.80736 -7.55596 0.08625 0.46740 0.58910 1.31951 1.32086 1.49266 1.58188 2.08982 2.16456 2.51339 2.71406 2.92554 3.54394 3.64106 3.81110 3.93416 4.17946 4.20888 4.31942 4.37301 4.40677 4.45866 4.50412 4.55829 4.70225 4.79200 4.83435 4.92008 4.95904 5.08697 5.18421 5.28762 5.45786 5.52581 5.64129 5.70727 5.80983 5.99846 6.26787 6.34807 6.69787 7.15131 8.14727 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.005068 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.013204 B = 5523.759660 C = 6266.687740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.065 3.935 4 C 0.504 3.496 5 O -0.572 6.572 6 C -0.098 4.098 7 C -0.116 4.116 8 C -0.085 4.085 9 C -0.143 4.143 10 C -0.095 4.095 11 C -0.206 4.206 12 C 0.170 3.830 13 N -1.058 6.058 14 S 2.712 3.288 15 O -1.035 7.035 16 O -1.022 7.022 17 C -1.035 5.035 18 H 0.121 0.879 19 C 0.075 3.925 20 N -0.888 5.888 21 Si 0.990 3.010 22 H -0.256 1.256 23 H -0.258 1.258 24 H -0.248 1.248 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.415 0.585 38 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 7.683 16.603 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.358 5.358 3 C -0.077 4.077 4 C 0.292 3.708 5 O -0.452 6.452 6 C -0.137 4.137 7 C -0.121 4.121 8 C -0.103 4.103 9 C -0.162 4.162 10 C -0.114 4.114 11 C -0.227 4.227 12 C 0.073 3.927 13 N -0.803 5.803 14 S 2.814 3.186 15 O -1.026 7.026 16 O -1.012 7.012 17 C -1.169 5.169 18 H 0.139 0.861 19 C -0.139 4.139 20 N -0.519 5.519 21 Si 0.808 3.192 22 H -0.180 1.180 23 H -0.181 1.181 24 H -0.171 1.171 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.249 0.751 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.528 7.765 15.919 18.554 hybrid contribution -0.783 -0.834 -0.915 1.465 sum -6.311 6.931 15.004 17.691 Atomic orbital electron populations 1.21744 0.78667 1.03267 1.02471 1.47942 1.07794 1.06839 1.73232 1.22176 0.98305 0.83994 1.03199 1.21002 0.90628 0.83428 0.75720 1.90718 1.71002 1.32688 1.50747 1.20702 0.91110 0.94802 1.07092 1.19420 1.04436 0.95883 0.92325 1.21206 0.96913 0.95376 0.96812 1.21428 1.01302 0.94947 0.98492 1.21248 0.97916 1.00788 0.91429 1.21912 1.04857 0.93971 1.01951 1.17529 0.97930 0.91643 0.85569 1.53520 1.49123 1.55016 1.22626 1.00362 0.72034 0.76436 0.69790 1.93326 1.80081 1.73055 1.56110 1.93346 1.35001 1.89373 1.83486 1.30814 1.41985 1.22643 1.21444 0.86081 1.25983 0.89863 1.05669 0.92341 1.69968 1.25734 1.40903 1.15324 0.85124 0.79439 0.74740 0.79901 1.18006 1.18142 1.17061 0.91638 0.88509 0.93156 0.91985 0.88229 0.89121 0.88087 0.83505 0.82356 0.82298 0.83774 0.85070 0.75078 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 10.44 127.77 1.33 2.78 16 2 N -0.62 -12.71 3.27 -871.87 -2.85 -15.57 16 3 C 0.06 0.75 10.24 127.77 1.31 2.05 16 4 C 0.50 14.13 7.34 87.66 0.64 14.77 16 5 O -0.57 -21.42 15.61 -3.04 -0.05 -21.47 16 6 C -0.10 -2.45 3.79 29.10 0.11 -2.34 16 7 C -0.12 -3.83 4.39 -19.74 -0.09 -3.91 16 8 C -0.08 -2.28 9.68 22.25 0.22 -2.07 16 9 C -0.14 -3.85 10.04 22.29 0.22 -3.62 16 10 C -0.10 -3.18 10.04 22.25 0.22 -2.96 16 11 C -0.21 -8.79 8.95 22.40 0.20 -8.59 16 12 C 0.17 7.13 6.17 38.21 0.24 7.37 16 13 N -1.06 -47.69 5.27 -51.37 -0.27 -47.96 16 14 S 2.71 152.32 4.63 -56.49 -0.26 152.06 16 15 O -1.04 -63.52 18.02 -128.00 -2.31 -65.82 16 16 O -1.02 -62.47 17.44 -128.00 -2.23 -64.70 16 17 C -1.04 -58.55 7.59 67.73 0.51 -58.03 16 18 H 0.12 6.37 6.87 -2.91 -0.02 6.35 16 19 C 0.08 4.22 5.46 84.65 0.46 4.68 16 20 N -0.89 -53.02 13.19 21.45 0.28 -52.74 16 21 Si 0.99 41.84 29.54 68.60 2.03 43.87 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 27 H 0.05 1.19 7.42 -2.39 -0.02 1.17 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.63 8.07 -2.38 -0.02 0.61 16 30 H 0.09 0.77 6.44 -2.39 -0.02 0.75 16 31 H 0.10 2.54 7.39 -2.39 -0.02 2.52 16 32 H 0.15 2.28 7.31 -2.39 -0.02 2.26 16 33 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.13 6.25 4.47 -2.91 -0.01 6.24 16 37 H 0.41 16.88 7.74 -96.75 -0.75 16.13 16 38 H 0.30 16.07 8.31 -92.70 -0.77 15.30 16 Total: -1.00 -86.48 334.97 0.07 -86.41 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.35 Total: 35.79 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 5.38 Total: -49.86 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -2.84 Total: -116.27 kcal Atomic # 8 Polarization: -147.41 SS G_CDS: -4.59 Total: -152.00 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 152.32 SS G_CDS: -0.26 Total: 152.06 kcal Total: -86.48 0.07 -86.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.911 kcal (2) G-P(sol) polarization free energy of solvation -86.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds