Wall clock time and date at job start Fri Apr 10 2020 18:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21284 * 120.00145 * 2 1 4 4 N 1.34775 * 119.99748 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99786 * 5.28051 * 4 2 1 6 6 C 1.39924 * 120.00204 * 185.27464 * 4 2 1 7 7 C 1.38891 * 120.07075 * 292.84498 * 6 4 2 8 8 C 1.38090 * 119.93275 * 179.97438 * 7 6 4 9 9 C 1.38307 * 120.06422 * 0.24636 * 8 7 6 10 10 C 1.38254 * 120.14302 * 359.49733 * 9 8 7 11 11 C 1.50706 * 119.96445 * 180.25281 * 10 9 8 12 12 N 1.46501 * 109.46920 * 270.25179 * 11 10 9 13 13 S 1.65603 * 119.99589 * 165.00121 * 12 11 10 14 14 O 1.42105 * 106.39848 * 178.53987 * 13 12 11 15 15 O 1.42097 * 106.40299 * 311.45698 * 13 12 11 16 16 C 1.76201 * 107.21744 * 65.00290 * 13 12 11 17 17 H 1.07996 * 120.00486 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99539 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99546 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 120.00194 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47250 * 90.00265 * 20 18 16 22 22 H 1.48506 * 109.46958 * 210.00117 * 20 18 16 23 23 H 1.48499 * 109.47138 * 329.99678 * 20 18 16 24 24 C 1.38134 * 120.07440 * 0.50275 * 10 9 8 25 25 H 1.09006 * 109.47045 * 240.00471 * 1 2 3 26 26 H 1.09004 * 109.47019 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47611 * 120.00318 * 1 2 3 28 28 H 1.08994 * 109.47351 * 269.99332 * 5 4 2 29 29 H 1.08993 * 109.47302 * 29.99953 * 5 4 2 30 30 H 1.09008 * 109.46720 * 149.99509 * 5 4 2 31 31 H 1.08008 * 120.03617 * 359.97438 * 7 6 4 32 32 H 1.08001 * 119.96804 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.92324 * 179.74313 * 9 8 7 34 34 H 1.08993 * 109.47201 * 30.25188 * 11 10 9 35 35 H 1.09005 * 109.46980 * 150.25719 * 11 10 9 36 36 H 0.96997 * 120.00449 * 344.99925 * 12 11 10 37 37 H 0.96999 * 119.99844 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.04456 * 179.76633 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4529 -2.4333 -0.1157 6 6 3.5757 -1.1698 0.1119 7 6 4.3568 -0.6546 -0.9145 8 6 5.7330 -0.6581 -0.8013 9 6 6.3338 -1.1787 0.3305 10 6 5.5590 -1.6876 1.3562 11 6 6.2177 -2.2487 2.5900 12 7 6.4766 -3.6778 2.3983 13 16 7.5123 -4.4753 3.4151 14 8 7.5228 -5.8323 2.9935 15 8 8.6858 -3.6783 3.4984 16 6 6.7841 -4.4584 5.0195 17 1 5.8291 -3.9785 5.1741 18 6 7.4343 -5.0569 6.0779 19 7 6.8910 -5.0438 7.2756 20 14 9.0866 -5.8862 5.8108 21 1 10.1758 -4.8993 6.0223 22 1 9.2396 -7.0063 6.7738 23 1 9.1578 -6.4125 4.4240 24 6 4.1818 -1.6870 1.2491 25 1 -0.3633 -0.5138 0.8901 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.1906 -2.7942 0.8788 29 1 0.5443 -2.2779 -0.6973 30 1 2.0825 -3.1698 -0.6151 31 1 3.8883 -0.2515 -1.8002 32 1 6.3409 -0.2579 -1.5992 33 1 7.4105 -1.1841 0.4148 34 1 7.1595 -1.7294 2.7672 35 1 5.5596 -2.1106 3.4480 36 1 6.0415 -4.1569 1.6759 37 1 7.3485 -5.4645 8.0203 38 1 3.5771 -2.0880 2.0490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:17 Heat of formation + Delta-G solvation = -82.702085 kcal Electronic energy + Delta-G solvation = -23345.975881 eV Core-core repulsion = 19701.589311 eV Total energy + Delta-G solvation = -3644.386570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67913 -38.81663 -36.01534 -35.61932 -34.60263 -34.43258 -33.03589 -31.25742 -30.80674 -29.09141 -26.99718 -26.43265 -25.37494 -22.81786 -21.78084 -19.54289 -19.07724 -17.56758 -17.42141 -16.91346 -16.57543 -16.25851 -16.15463 -15.54499 -15.04713 -14.89078 -14.26958 -13.81175 -13.69848 -13.48998 -13.35314 -13.10746 -13.08314 -12.94887 -12.77254 -12.57900 -12.40313 -12.32706 -11.76748 -11.46412 -11.39221 -11.13045 -10.76308 -10.63085 -10.50381 -10.14924 -9.87896 -9.46512 -9.26315 -9.21781 -8.86933 -8.61853 -8.50633 -6.81173 -5.35292 1.17469 1.28571 2.11341 2.32831 2.67325 3.07195 3.17910 3.26841 3.63473 3.95099 4.36539 4.43313 4.58653 4.70296 4.75819 4.86058 4.89323 4.94954 5.08937 5.13408 5.27208 5.29606 5.33728 5.39846 5.47851 5.52420 5.76173 5.89379 6.04199 6.14442 6.27430 6.32377 6.43326 6.55490 6.64856 6.92176 7.04861 7.46624 7.70846 7.89694 8.19342 8.69875 10.31143 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.003330 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.086867 B = 8406.300554 C = 8960.657193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.531 6.531 4 N -0.577 5.577 5 C 0.077 3.923 6 C 0.129 3.871 7 C -0.104 4.104 8 C -0.113 4.113 9 C -0.100 4.100 10 C -0.079 4.079 11 C 0.165 3.835 12 N -1.121 6.121 13 S 2.676 3.324 14 O -1.008 7.008 15 O -1.011 7.011 16 C -1.016 5.016 17 H 0.121 0.879 18 C 0.153 3.847 19 N -0.824 5.824 20 Si 0.803 3.197 21 H -0.246 1.246 22 H -0.256 1.256 23 H -0.220 1.220 24 C -0.103 4.103 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.406 0.594 37 H 0.281 0.719 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.916 6.642 -15.368 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.406 6.406 4 N -0.307 5.307 5 C -0.065 4.065 6 C 0.039 3.961 7 C -0.123 4.123 8 C -0.131 4.131 9 C -0.119 4.119 10 C -0.081 4.081 11 C 0.038 3.962 12 N -0.876 5.876 13 S 2.778 3.222 14 O -0.998 6.998 15 O -1.001 7.001 16 C -1.151 5.151 17 H 0.139 0.861 18 C -0.067 4.067 19 N -0.453 5.453 20 Si 0.623 3.377 21 H -0.170 1.170 22 H -0.180 1.180 23 H -0.142 1.142 24 C -0.123 4.123 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.731 6.900 -15.283 19.908 hybrid contribution -0.212 -0.533 0.323 0.658 sum -10.943 6.367 -14.960 19.598 Atomic orbital electron populations 1.21950 0.91126 1.05612 1.04350 1.20985 0.90710 0.82802 0.75435 1.90755 1.70756 1.30868 1.48260 1.45423 1.04589 1.07361 1.73356 1.21941 0.97138 0.84857 1.02535 1.17487 0.82231 1.01930 0.94432 1.21146 0.93798 0.99545 0.97847 1.21020 0.94025 0.99867 0.98226 1.21251 1.00510 0.97127 0.92969 1.19893 0.92871 0.98827 0.96537 1.20054 1.00766 0.81194 0.94164 1.55540 1.67079 1.17073 1.47910 1.01329 0.72970 0.72249 0.75668 1.93477 1.87072 1.35085 1.84178 1.93404 1.47866 1.70773 1.88015 1.30462 1.20256 1.50292 1.14062 0.86097 1.24433 0.96850 0.91268 0.94107 1.69989 1.37895 1.37154 1.00222 0.87847 0.84361 0.81813 0.83716 1.16986 1.17955 1.14197 1.21161 0.94533 1.00172 0.96450 0.89041 0.88865 0.89267 0.91762 0.90419 0.90419 0.86278 0.85541 0.85162 0.89412 0.90823 0.76271 0.90904 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 9.00 36.01 0.32 -0.72 16 2 C 0.51 5.67 7.66 -10.98 -0.08 5.58 16 3 O -0.53 -8.31 16.64 5.55 0.09 -8.21 16 4 N -0.58 -5.95 2.93 -120.82 -0.35 -6.30 16 5 C 0.08 0.49 10.10 59.85 0.60 1.10 16 6 C 0.13 1.63 4.82 -83.69 -0.40 1.22 16 7 C -0.10 -1.27 9.31 -39.39 -0.37 -1.63 16 8 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 9 C -0.10 -1.29 9.70 -39.55 -0.38 -1.67 16 10 C -0.08 -1.12 5.27 -104.65 -0.55 -1.67 16 11 C 0.16 2.71 6.34 -5.19 -0.03 2.68 16 12 N -1.12 -20.71 5.99 -11.65 -0.07 -20.78 16 13 S 2.68 65.18 4.24 -107.50 -0.46 64.73 16 14 O -1.01 -26.55 16.02 -57.17 -0.92 -27.46 16 15 O -1.01 -26.36 16.30 -57.17 -0.93 -27.29 16 16 C -1.02 -27.87 10.26 30.60 0.31 -27.55 16 17 H 0.12 3.32 8.06 -52.49 -0.42 2.90 16 18 C 0.15 4.36 5.47 -17.82 -0.10 4.26 16 19 N -0.82 -23.62 13.96 55.43 0.77 -22.84 16 20 Si 0.80 20.46 26.54 -169.99 -4.51 15.95 16 21 H -0.25 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 23 H -0.22 -5.69 5.61 56.52 0.32 -5.38 16 24 C -0.10 -1.37 9.51 -39.39 -0.37 -1.74 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.09 0.33 7.24 -51.93 -0.38 -0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.29 6.48 -51.93 -0.34 -0.05 16 30 H 0.08 0.49 8.05 -51.92 -0.42 0.07 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.09 1.46 7.69 -51.93 -0.40 1.06 16 35 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.41 6.51 8.64 -34.47 -0.30 6.21 16 37 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -36.13 339.12 -7.56 -43.70 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.85 Total: 5.28 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.45 Total: -21.86 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.35 Total: -49.93 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -1.76 Total: -62.97 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.51 Total: 15.95 kcal Atomic # 16 Polarization: 65.18 SS G_CDS: -0.46 Total: 64.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.13 -7.56 -43.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.007 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds