Wall clock time and date at job start Fri Apr 10 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21284 * 120.00145 * 2 1 4 4 N 1.34775 * 119.99748 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99786 * 5.28051 * 4 2 1 6 6 C 1.39924 * 120.00204 * 185.27464 * 4 2 1 7 7 C 1.38891 * 120.07075 * 292.84498 * 6 4 2 8 8 C 1.38090 * 119.93275 * 179.97438 * 7 6 4 9 9 C 1.38307 * 120.06422 * 0.24636 * 8 7 6 10 10 C 1.38254 * 120.14302 * 359.49733 * 9 8 7 11 11 C 1.50706 * 119.96445 * 180.25281 * 10 9 8 12 12 N 1.46501 * 109.46920 * 270.25179 * 11 10 9 13 13 S 1.65603 * 119.99589 * 165.00121 * 12 11 10 14 14 O 1.42105 * 106.39848 * 178.53987 * 13 12 11 15 15 O 1.42097 * 106.40299 * 311.45698 * 13 12 11 16 16 C 1.76201 * 107.21744 * 65.00290 * 13 12 11 17 17 H 1.07996 * 120.00486 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99539 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99546 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 120.00194 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47250 * 90.00265 * 20 18 16 22 22 H 1.48506 * 109.46958 * 210.00117 * 20 18 16 23 23 H 1.48499 * 109.47138 * 329.99678 * 20 18 16 24 24 C 1.38134 * 120.07440 * 0.50275 * 10 9 8 25 25 H 1.09006 * 109.47045 * 240.00471 * 1 2 3 26 26 H 1.09004 * 109.47019 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47611 * 120.00318 * 1 2 3 28 28 H 1.08994 * 109.47351 * 269.99332 * 5 4 2 29 29 H 1.08993 * 109.47302 * 29.99953 * 5 4 2 30 30 H 1.09008 * 109.46720 * 149.99509 * 5 4 2 31 31 H 1.08008 * 120.03617 * 359.97438 * 7 6 4 32 32 H 1.08001 * 119.96804 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.92324 * 179.74313 * 9 8 7 34 34 H 1.08993 * 109.47201 * 30.25188 * 11 10 9 35 35 H 1.09005 * 109.46980 * 150.25719 * 11 10 9 36 36 H 0.96997 * 120.00449 * 344.99925 * 12 11 10 37 37 H 0.96999 * 119.99844 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.04456 * 179.76633 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4529 -2.4333 -0.1157 6 6 3.5757 -1.1698 0.1119 7 6 4.3568 -0.6546 -0.9145 8 6 5.7330 -0.6581 -0.8013 9 6 6.3338 -1.1787 0.3305 10 6 5.5590 -1.6876 1.3562 11 6 6.2177 -2.2487 2.5900 12 7 6.4766 -3.6778 2.3983 13 16 7.5123 -4.4753 3.4151 14 8 7.5228 -5.8323 2.9935 15 8 8.6858 -3.6783 3.4984 16 6 6.7841 -4.4584 5.0195 17 1 5.8291 -3.9785 5.1741 18 6 7.4343 -5.0569 6.0779 19 7 6.8910 -5.0438 7.2756 20 14 9.0866 -5.8862 5.8108 21 1 10.1758 -4.8993 6.0223 22 1 9.2396 -7.0063 6.7738 23 1 9.1578 -6.4125 4.4240 24 6 4.1818 -1.6870 1.2491 25 1 -0.3633 -0.5138 0.8901 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.1906 -2.7942 0.8788 29 1 0.5443 -2.2779 -0.6973 30 1 2.0825 -3.1698 -0.6151 31 1 3.8883 -0.2515 -1.8002 32 1 6.3409 -0.2579 -1.5992 33 1 7.4105 -1.1841 0.4148 34 1 7.1595 -1.7294 2.7672 35 1 5.5596 -2.1106 3.4480 36 1 6.0415 -4.1569 1.6759 37 1 7.3485 -5.4645 8.0203 38 1 3.5771 -2.0880 2.0490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:16 Heat of formation + Delta-G solvation = -110.281670 kcal Electronic energy + Delta-G solvation = -23347.171822 eV Core-core repulsion = 19701.589311 eV Total energy + Delta-G solvation = -3645.582511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.55237 -39.80067 -37.69284 -36.95741 -36.48388 -35.85976 -35.17247 -32.05901 -31.95874 -29.78673 -28.56140 -27.66890 -26.63312 -23.71211 -22.80719 -21.14039 -20.32972 -19.46670 -18.70783 -18.28851 -17.69139 -17.22780 -17.12858 -17.02705 -16.81641 -15.94665 -15.69568 -15.35450 -15.12888 -14.98808 -14.52610 -14.31442 -14.15016 -13.97788 -13.56521 -13.54712 -13.44782 -13.32569 -13.11790 -12.93729 -12.92515 -12.69035 -12.55899 -12.47698 -12.18826 -11.79522 -11.32667 -11.23221 -11.02480 -10.33515 -10.28264 -9.89450 -9.44541 -8.95552 -7.51654 -0.01318 0.26260 0.42101 1.06764 1.16159 1.23324 1.52144 1.90492 1.94363 2.42609 2.50655 2.81313 3.31988 3.61950 3.74456 3.91611 4.08953 4.15044 4.22269 4.32862 4.37764 4.46370 4.49293 4.52402 4.61451 4.71490 4.76883 4.89302 4.93917 4.98925 5.07668 5.35991 5.36847 5.39371 5.50908 5.61178 6.00209 6.02049 6.26365 6.28821 6.55065 7.09138 8.21965 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.003330 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.086867 B = 8406.300554 C = 8960.657193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.588 6.588 4 N -0.577 5.577 5 C 0.070 3.930 6 C 0.121 3.879 7 C -0.109 4.109 8 C -0.107 4.107 9 C -0.108 4.108 10 C -0.089 4.089 11 C 0.160 3.840 12 N -1.104 6.104 13 S 2.701 3.299 14 O -1.027 7.027 15 O -1.028 7.028 16 C -1.038 5.038 17 H 0.108 0.892 18 C 0.108 3.892 19 N -0.854 5.854 20 Si 0.825 3.175 21 H -0.239 1.239 22 H -0.222 1.222 23 H -0.227 1.227 24 C -0.111 4.111 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.419 0.581 37 H 0.291 0.709 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 6.381 -16.895 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.294 3.706 3 O -0.467 6.467 4 N -0.307 5.307 5 C -0.070 4.070 6 C 0.031 3.969 7 C -0.129 4.129 8 C -0.126 4.126 9 C -0.127 4.127 10 C -0.092 4.092 11 C 0.035 3.965 12 N -0.864 5.864 13 S 2.801 3.199 14 O -1.017 7.017 15 O -1.017 7.017 16 C -1.171 5.171 17 H 0.126 0.874 18 C -0.108 4.108 19 N -0.484 5.484 20 Si 0.642 3.358 21 H -0.163 1.163 22 H -0.144 1.144 23 H -0.150 1.150 24 C -0.131 4.131 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.101 0.899 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.624 6.588 -16.784 21.453 hybrid contribution -0.053 -0.387 0.723 0.822 sum -11.677 6.200 -16.061 20.803 Atomic orbital electron populations 1.21985 0.87087 1.06322 1.06671 1.21930 0.92618 0.82012 0.74013 1.90724 1.72171 1.32798 1.51040 1.45660 1.03857 1.08669 1.72494 1.22221 0.98008 0.83142 1.03658 1.17682 0.83788 1.01283 0.94162 1.21379 0.94247 0.99192 0.98111 1.21299 0.94112 0.98811 0.98329 1.21407 1.00959 0.97235 0.93083 1.19687 0.93292 1.00152 0.96038 1.20172 1.00939 0.79718 0.95702 1.55048 1.66382 1.17966 1.47011 1.00424 0.72916 0.71795 0.74779 1.93441 1.87551 1.36613 1.84141 1.93377 1.48992 1.71091 1.88261 1.30993 1.20051 1.49810 1.16238 0.87415 1.25166 0.99437 0.91959 0.94269 1.70014 1.39306 1.38174 1.00954 0.87485 0.81649 0.82505 0.84139 1.16266 1.14376 1.14981 1.21197 0.94300 1.00676 0.96941 0.87098 0.89098 0.86194 0.91051 0.87126 0.90430 0.85514 0.82865 0.84384 0.89733 0.90941 0.74599 0.89870 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.00 71.24 0.64 -0.89 16 2 C 0.50 10.46 7.66 87.66 0.67 11.14 16 3 O -0.59 -18.35 16.64 -3.04 -0.05 -18.41 16 4 N -0.58 -10.99 2.93 -654.56 -1.92 -12.90 16 5 C 0.07 0.72 10.10 127.77 1.29 2.01 16 6 C 0.12 2.94 4.82 38.15 0.18 3.12 16 7 C -0.11 -2.54 9.31 22.39 0.21 -2.33 16 8 C -0.11 -2.31 10.04 22.25 0.22 -2.09 16 9 C -0.11 -2.67 9.70 22.29 0.22 -2.45 16 10 C -0.09 -2.48 5.27 -19.88 -0.10 -2.58 16 11 C 0.16 5.26 6.34 85.63 0.54 5.80 16 12 N -1.10 -40.27 5.99 -190.78 -1.14 -41.41 16 13 S 2.70 130.76 4.24 -56.49 -0.24 130.52 16 14 O -1.03 -53.48 16.02 -128.00 -2.05 -55.54 16 15 O -1.03 -53.11 16.30 -128.00 -2.09 -55.20 16 16 C -1.04 -57.53 10.26 67.74 0.69 -56.84 16 17 H 0.11 6.07 8.06 -2.91 -0.02 6.04 16 18 C 0.11 6.18 5.47 84.66 0.46 6.65 16 19 N -0.85 -49.20 13.96 21.45 0.30 -48.91 16 20 Si 0.83 40.80 26.54 68.60 1.82 42.62 16 21 H -0.24 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.22 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.23 -11.49 5.61 99.48 0.56 -10.94 16 24 C -0.11 -2.88 9.51 22.39 0.21 -2.67 16 25 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.09 0.95 8.12 -2.38 -0.02 0.93 16 27 H 0.12 0.41 7.24 -2.39 -0.02 0.39 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.39 6.48 -2.39 -0.02 0.37 16 30 H 0.08 0.81 8.05 -2.38 -0.02 0.79 16 31 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.08 2.82 7.69 -2.39 -0.02 2.80 16 35 H 0.07 2.37 8.08 -2.38 -0.02 2.36 16 36 H 0.42 13.07 8.64 -96.75 -0.84 12.23 16 37 H 0.29 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -78.14 339.12 -0.02 -78.16 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.10 Total: 22.20 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 5.24 Total: -41.14 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -2.76 Total: -103.22 kcal Atomic # 8 Polarization: -124.95 SS G_CDS: -4.19 Total: -129.14 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.82 Total: 42.62 kcal Atomic # 16 Polarization: 130.76 SS G_CDS: -0.24 Total: 130.52 kcal Total: -78.14 -0.02 -78.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.118 kcal (2) G-P(sol) polarization free energy of solvation -78.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds