Wall clock time and date at job start Fri Apr 10 2020 18:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34280 * 119.22800 * 2 1 4 4 O 1.22063 * 120.11840 * 0.08884 * 3 2 1 5 5 C 1.40554 * 119.76009 * 180.10886 * 3 2 1 6 6 C 1.36072 * 118.96876 * 0.19992 * 5 3 2 7 7 C 1.40902 * 119.94648 * 359.90484 * 6 5 3 8 8 C 1.34812 * 119.67333 * 359.70097 * 7 6 5 9 9 C 1.50734 * 122.73807 * 180.64029 * 8 7 6 10 10 C 1.52692 * 110.72755 * 341.94076 * 9 8 7 11 11 C 1.53371 * 108.23966 * 50.91859 * 10 9 8 12 12 H 1.08993 * 109.71800 * 50.67668 * 11 10 9 13 13 N 1.46503 * 109.71551 * 171.27645 * 11 10 9 14 14 S 1.65593 * 120.00000 * 214.99739 * 13 11 10 15 15 O 1.42102 * 106.40563 * 311.45836 * 14 13 11 16 16 O 1.42106 * 106.40238 * 178.53432 * 14 13 11 17 17 C 1.76202 * 107.21873 * 65.00092 * 14 13 11 18 18 H 1.08005 * 119.99807 * 0.27174 * 17 14 13 19 19 C 1.37874 * 120.00148 * 180.02562 * 17 14 13 20 20 N 1.31521 * 120.00167 * 179.97438 * 19 17 14 21 21 Si 1.86799 * 120.00227 * 359.97438 * 19 17 14 22 22 H 1.48498 * 109.47397 * 89.99761 * 21 19 17 23 23 H 1.48503 * 109.47336 * 210.00422 * 21 19 17 24 24 H 1.48505 * 109.46573 * 330.00110 * 21 19 17 25 25 C 1.50640 * 117.36946 * 179.29513 * 7 6 5 26 26 H 1.08994 * 109.47260 * 234.89137 * 1 2 3 27 27 H 1.09010 * 109.47132 * 354.88976 * 1 2 3 28 28 H 1.08996 * 109.47033 * 114.88735 * 1 2 3 29 29 H 1.07998 * 120.51494 * 180.21176 * 5 3 2 30 30 H 1.07995 * 120.02645 * 179.90801 * 6 5 3 31 31 H 1.09004 * 109.22456 * 221.62720 * 9 8 7 32 32 H 1.08997 * 109.19495 * 102.24679 * 9 8 7 33 33 H 1.08999 * 109.71046 * 291.22712 * 10 9 8 34 34 H 1.08997 * 109.71016 * 170.60143 * 10 9 8 35 35 H 0.97005 * 119.99619 * 34.99260 * 13 11 10 36 36 H 0.97000 * 119.99672 * 180.02562 * 20 19 17 37 37 H 1.09000 * 109.22499 * 42.21720 * 25 7 6 38 38 H 1.09004 * 109.22094 * 282.87108 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1206 1.1718 0.0000 4 8 1.4983 2.2219 0.0016 5 6 3.5261 1.1849 -0.0023 6 6 4.1962 0.0006 -0.0087 7 6 3.4799 -1.2128 -0.0108 8 6 2.1320 -1.1921 -0.0004 9 6 1.2976 -2.4474 0.0123 10 6 2.1256 -3.6513 -0.4310 11 6 3.4182 -3.6748 0.3942 12 1 3.1793 -3.5923 1.4544 13 7 4.1401 -4.9253 0.1462 14 16 4.9889 -5.6481 1.3707 15 8 5.7799 -4.6291 1.9667 16 8 5.5383 -6.8412 0.8282 17 6 3.8203 -6.1486 2.5907 18 1 2.7675 -5.9608 2.4393 19 6 4.2493 -6.7845 3.7364 20 7 3.3770 -7.1576 4.6473 21 14 6.0693 -7.1161 3.9950 22 1 6.6870 -5.9647 4.7006 23 1 6.2375 -8.3452 4.8113 24 1 6.7303 -7.3022 2.6782 25 6 4.2798 -2.4891 -0.0344 26 1 -0.3633 -0.5910 0.8406 27 1 -0.3634 1.0237 0.0915 28 1 -0.3633 -0.4325 -0.9322 29 1 4.0658 2.1203 0.0011 30 1 5.2761 -0.0093 -0.0121 31 1 0.4529 -2.3237 -0.6655 32 1 0.9252 -2.6200 1.0220 33 1 2.3671 -3.5615 -1.4901 34 1 1.5626 -4.5684 -0.2582 35 1 4.1208 -5.3299 -0.7352 36 1 3.6789 -7.6046 5.4535 37 1 5.1257 -2.3952 0.6466 38 1 4.6508 -2.6615 -1.0447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:39 Heat of formation + Delta-G solvation = -89.576071 kcal Electronic energy + Delta-G solvation = -24253.465147 eV Core-core repulsion = 20608.780498 eV Total energy + Delta-G solvation = -3644.684649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -41.65019 -38.52373 -36.22931 -35.60934 -35.02500 -34.48140 -33.10446 -32.66617 -30.12336 -28.37955 -27.52212 -26.46408 -24.02225 -22.80739 -22.28973 -20.25891 -19.16241 -17.75450 -17.48797 -16.99748 -16.74074 -16.43303 -15.86115 -15.58586 -15.13291 -14.60099 -14.11370 -13.95779 -13.93086 -13.50185 -13.38321 -13.29686 -13.01521 -12.86367 -12.72678 -12.62602 -12.13976 -11.92672 -11.45366 -11.35168 -11.10858 -11.02105 -10.85298 -10.66632 -10.60629 -10.51445 -10.00280 -9.97775 -9.86326 -9.32030 -9.25950 -8.72591 -7.84312 -6.85938 -5.40577 0.77731 1.80042 1.99868 2.55510 3.03949 3.14230 3.23098 3.56306 3.90897 4.13196 4.18900 4.52414 4.55286 4.64418 4.76864 4.85666 5.00964 5.02297 5.14303 5.18520 5.24436 5.35028 5.37514 5.45743 5.47901 5.59560 5.81329 5.85884 5.91948 5.97218 6.07945 6.15273 6.23031 6.35646 6.52943 6.62945 7.03267 7.41644 7.64742 7.97254 8.13181 8.65155 10.26157 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.003929 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.176581 B = 7125.204375 C = 7305.558510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.500 5.500 3 C 0.515 3.485 4 O -0.565 6.565 5 C -0.250 4.250 6 C -0.007 4.007 7 C -0.174 4.174 8 C 0.162 3.838 9 C -0.089 4.089 10 C -0.122 4.122 11 C 0.159 3.841 12 H 0.098 0.902 13 N -1.118 6.118 14 S 2.673 3.327 15 O -1.009 7.009 16 O -1.009 7.009 17 C -1.017 5.017 18 H 0.121 0.879 19 C 0.154 3.846 20 N -0.823 5.823 21 Si 0.801 3.199 22 H -0.246 1.246 23 H -0.255 1.255 24 H -0.220 1.220 25 C -0.083 4.083 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.406 0.594 36 H 0.281 0.719 37 H 0.094 0.906 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 9.246 -10.263 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.212 5.212 3 C 0.317 3.683 4 O -0.450 6.450 5 C -0.272 4.272 6 C -0.028 4.028 7 C -0.179 4.179 8 C 0.056 3.944 9 C -0.127 4.127 10 C -0.161 4.161 11 C 0.050 3.950 12 H 0.116 0.884 13 N -0.872 5.872 14 S 2.775 3.225 15 O -0.998 6.998 16 O -0.999 6.999 17 C -1.151 5.151 18 H 0.139 0.861 19 C -0.066 4.066 20 N -0.452 5.452 21 Si 0.621 3.379 22 H -0.170 1.170 23 H -0.179 1.179 24 H -0.142 1.142 25 C -0.123 4.123 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.238 0.762 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.917 9.811 -9.902 14.479 hybrid contribution 0.043 -0.454 0.257 0.523 sum -3.874 9.357 -9.645 13.985 Atomic orbital electron populations 1.22169 0.77884 1.05966 1.03074 1.45384 1.09063 1.06264 1.60448 1.17041 0.89486 0.82581 0.79158 1.90922 1.69782 1.29812 1.54448 1.22025 0.92824 0.99860 1.12451 1.21575 1.01002 0.91271 0.88994 1.18951 0.91194 0.96404 1.11386 1.20230 0.92349 0.86411 0.95436 1.20767 0.97685 0.90185 1.04111 1.21882 0.96180 0.97564 1.00503 1.20594 0.90487 0.83125 1.00753 0.88369 1.55587 1.70167 1.34483 1.26922 1.01428 0.74417 0.72833 0.73816 1.93413 1.69639 1.59945 1.76853 1.93482 1.79032 1.47264 1.80113 1.30453 1.11498 1.53441 1.19739 0.86081 1.24418 0.98361 0.90177 0.93652 1.69983 1.35221 1.32111 1.07865 0.87864 0.84753 0.81085 0.84159 1.16963 1.17938 1.14218 1.20871 0.98436 0.89810 1.03176 0.90093 0.88065 0.90503 0.83467 0.84539 0.89256 0.88313 0.90711 0.89247 0.76225 0.90869 0.88730 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 9.30 59.85 0.56 1.00 16 2 N -0.50 -5.91 3.00 -122.56 -0.37 -6.28 16 3 C 0.51 7.39 7.40 -15.61 -0.12 7.27 16 4 O -0.57 -9.76 16.36 4.86 0.08 -9.69 16 5 C -0.25 -3.12 10.00 -39.49 -0.40 -3.51 16 6 C -0.01 -0.08 9.64 -39.35 -0.38 -0.46 16 7 C -0.17 -2.09 5.72 -104.86 -0.60 -2.69 16 8 C 0.16 1.82 6.53 -81.66 -0.53 1.29 16 9 C -0.09 -0.81 4.71 -28.02 -0.13 -0.94 16 10 C -0.12 -1.25 5.54 -26.70 -0.15 -1.40 16 11 C 0.16 2.24 2.70 -67.89 -0.18 2.06 16 12 H 0.10 1.56 7.84 -51.93 -0.41 1.15 16 13 N -1.12 -18.35 5.49 -4.86 -0.03 -18.38 16 14 S 2.67 61.52 4.15 -107.50 -0.45 61.07 16 15 O -1.01 -24.83 16.41 -57.17 -0.94 -25.77 16 16 O -1.01 -25.57 16.02 -57.17 -0.92 -26.49 16 17 C -1.02 -26.61 10.14 30.60 0.31 -26.30 16 18 H 0.12 3.14 8.06 -52.48 -0.42 2.72 16 19 C 0.15 4.23 5.47 -17.82 -0.10 4.14 16 20 N -0.82 -22.92 13.96 55.43 0.77 -22.14 16 21 Si 0.80 19.91 26.54 -169.99 -4.51 15.39 16 22 H -0.25 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.26 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.22 -5.56 5.61 56.52 0.32 -5.24 16 25 C -0.08 -1.07 5.28 -28.06 -0.15 -1.22 16 26 H 0.08 0.56 7.78 -51.93 -0.40 0.16 16 27 H 0.10 1.01 6.84 -51.92 -0.35 0.65 16 28 H 0.08 0.50 7.51 -51.93 -0.39 0.11 16 29 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.09 0.59 6.81 -51.93 -0.35 0.23 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.41 5.49 8.85 -34.47 -0.30 5.18 16 36 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -34.70 322.75 -8.16 -42.86 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.80 Total: 5.33 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -1.87 Total: -20.77 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.38 Total: -46.80 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -1.77 Total: -61.94 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.51 Total: 15.39 kcal Atomic # 16 Polarization: 61.52 SS G_CDS: -0.45 Total: 61.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.70 -8.16 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.719 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds