Wall clock time and date at job start Fri Apr 10 2020 18:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42101 * 110.54256 * 2 1 4 4 O 1.42098 * 110.54223 * 223.24889 * 2 1 3 5 5 C 1.76201 * 104.44489 * 111.62402 * 2 1 3 6 6 C 1.38167 * 119.55498 * 269.97777 * 5 2 1 7 7 C 1.39796 * 119.00055 * 180.02562 * 6 5 2 8 8 C 1.48158 * 120.91943 * 179.97438 * 7 6 5 9 9 O 1.21512 * 119.99904 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99491 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99397 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46871 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47268 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47301 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99863 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99952 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00177 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99648 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47258 * 59.99607 * 18 16 14 20 20 H 1.48507 * 109.46905 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47191 * 299.99396 * 18 16 14 22 22 C 1.39830 * 118.15695 * 0.02562 * 7 6 5 23 23 C 1.38128 * 119.00127 * 0.02562 * 22 7 6 24 24 N 1.31804 * 119.55015 * 90.00315 * 5 2 1 25 25 H 1.08996 * 109.46816 * 308.37919 * 1 2 3 26 26 H 1.09005 * 109.46811 * 68.37228 * 1 2 3 27 27 H 1.08996 * 109.47116 * 188.37196 * 1 2 3 28 28 H 1.08004 * 120.49861 * 0.02562 * 6 5 2 29 29 H 0.96999 * 120.00567 * 0.02562 * 10 8 7 30 30 H 1.09001 * 109.47211 * 300.00040 * 11 10 8 31 31 H 1.09000 * 109.47296 * 60.00497 * 11 10 8 32 32 H 1.08998 * 109.47420 * 300.00521 * 12 11 10 33 33 H 1.09005 * 109.47258 * 59.99665 * 12 11 10 34 34 H 1.08993 * 109.47395 * 300.00293 * 13 12 11 35 35 H 1.09000 * 109.46871 * 60.00228 * 13 12 11 36 36 H 0.97001 * 120.00467 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.49915 * 180.02562 * 22 7 6 38 38 H 1.08008 * 119.55022 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4241 0.2453 2.6426 7 6 2.7733 -0.2660 3.8959 8 6 2.9673 0.6327 5.0577 9 8 2.8225 1.8322 4.9287 10 7 3.3034 0.1195 6.2577 11 6 3.4946 1.0082 7.4066 12 6 3.8685 0.1783 8.6365 13 6 4.0689 1.1064 9.8363 14 6 4.4377 0.2891 11.0475 15 1 4.5204 -0.7850 10.9694 16 6 4.6685 0.9124 12.2555 17 7 4.5672 2.2201 12.3507 18 14 5.1249 -0.1009 13.7570 19 1 6.3833 -0.8426 13.4898 20 1 5.3195 0.7999 14.9215 21 1 4.0353 -1.0652 14.0534 22 6 2.9355 -1.6491 4.0223 23 6 2.7464 -2.4498 2.9128 24 7 2.4158 -1.9267 1.7489 25 1 -0.3633 0.6380 0.8056 26 1 -0.3633 0.3788 -0.9554 27 1 -0.3633 -1.0167 0.1496 28 1 2.2895 1.3077 2.5021 29 1 3.4186 -0.8381 6.3608 30 1 4.2947 1.7159 7.1894 31 1 2.5710 1.5528 7.6025 32 1 3.0688 -0.5297 8.8539 33 1 4.7922 -0.3661 8.4404 34 1 4.8688 1.8140 9.6187 35 1 3.1453 1.6510 10.0325 36 1 4.7299 2.6586 13.2005 37 1 3.2045 -2.0848 4.9732 38 1 2.8690 -3.5193 3.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194693196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:57 Heat of formation + Delta-G solvation = -75.814911 kcal Electronic energy + Delta-G solvation = -22307.309011 eV Core-core repulsion = 18663.221091 eV Total energy + Delta-G solvation = -3644.087920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04094 -39.28809 -37.51582 -36.35951 -35.70233 -33.75947 -33.08572 -32.16037 -31.17661 -30.00863 -27.20308 -25.31747 -24.43844 -23.04235 -21.33416 -20.73566 -19.40787 -18.57567 -17.52006 -16.96980 -16.68628 -16.42516 -16.21171 -15.77006 -15.64354 -15.52067 -14.80629 -14.64007 -14.51403 -13.98284 -13.89365 -13.72408 -13.68145 -12.90976 -12.49188 -12.38049 -12.36104 -11.97869 -11.91537 -11.78139 -11.43362 -10.95754 -10.88708 -10.72484 -10.56382 -10.50642 -10.09515 -10.04998 -9.99171 -9.52806 -9.22514 -9.07020 -8.44181 -6.08679 -4.12477 -0.49677 -0.02552 0.29884 2.25047 2.45163 2.86731 3.13274 3.26922 3.32303 3.33675 3.48694 3.53121 4.01293 4.12705 4.26002 4.28898 4.33435 4.38198 4.47504 4.66108 5.00872 5.12841 5.14962 5.27102 5.33796 5.52935 5.60587 5.82268 5.99267 6.18564 6.43901 6.63088 6.85858 7.00420 7.34184 7.54080 7.65632 7.88706 7.97880 8.29350 8.93709 9.52123 11.02483 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.002106 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.037967 B =13293.787357 C =13787.318638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.509 3.491 3 O -0.925 6.925 4 O -0.914 6.914 5 C -0.438 4.438 6 C -0.034 4.034 7 C -0.096 4.096 8 C 0.549 3.451 9 O -0.524 6.524 10 N -0.714 5.714 11 C 0.114 3.886 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.089 4.089 23 C 0.082 3.918 24 N -0.381 5.381 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.169 0.831 29 H 0.399 0.601 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 -8.983 -23.698 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.684 3.316 3 O -0.922 6.922 4 O -0.911 6.911 5 C -0.655 4.655 6 C -0.055 4.055 7 C -0.108 4.108 8 C 0.334 3.666 9 O -0.401 6.401 10 N -0.364 5.364 11 C -0.008 4.008 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.109 4.109 23 C -0.079 4.079 24 N -0.091 5.091 25 H 0.152 0.848 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.186 0.814 29 H 0.234 0.766 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.169 0.831 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.736 -8.215 -24.953 27.685 hybrid contribution 0.071 -0.781 2.624 2.739 sum -8.665 -8.996 -22.329 25.585 Atomic orbital electron populations 1.30175 1.24653 1.12479 1.12308 1.05455 0.78342 0.74508 0.73338 1.93653 1.77677 1.35732 1.85121 1.93606 1.77063 1.61159 1.59299 1.33346 1.13293 0.97146 1.21753 1.22171 0.90261 1.02336 0.90775 1.20655 1.00707 0.94227 0.95178 1.18044 0.78213 0.87648 0.82718 1.90821 1.50423 1.14650 1.84191 1.46144 1.69304 1.11565 1.09435 1.21795 1.01913 0.93029 0.84022 1.21915 1.00366 0.99327 0.94335 1.19023 0.97516 0.94349 0.90448 1.21138 1.47637 0.93431 0.94155 0.92687 1.25030 0.95419 0.94927 0.99046 1.69944 1.49218 1.08174 1.25822 0.86629 0.78999 0.79967 0.82219 1.20221 1.21226 1.20231 1.22762 0.93670 0.93197 1.01297 1.23100 0.96089 1.01318 0.87429 1.67651 1.05302 1.11062 1.25134 0.84750 0.84408 0.84577 0.81402 0.76649 0.91185 0.91196 0.92597 0.92579 0.96190 0.96210 0.92779 0.83081 0.80652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.16 10.80 101.05 1.09 -1.07 16 2 S 2.51 19.82 5.86 -107.50 -0.63 19.19 16 3 O -0.93 -10.04 17.10 -57.54 -0.98 -11.02 16 4 O -0.91 -10.26 17.73 -57.54 -1.02 -11.28 16 5 C -0.44 -4.18 6.53 -17.59 -0.11 -4.30 16 6 C -0.03 -0.36 9.07 -39.03 -0.35 -0.71 16 7 C -0.10 -1.03 5.91 -104.65 -0.62 -1.65 16 8 C 0.55 7.52 7.80 -12.19 -0.10 7.42 16 9 O -0.52 -9.15 16.45 5.36 0.09 -9.06 16 10 N -0.71 -9.05 5.51 -61.15 -0.34 -9.38 16 11 C 0.11 1.84 5.67 -4.04 -0.02 1.81 16 12 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.53 -14.19 9.11 -34.44 -0.31 -14.51 16 15 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 18 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.09 -0.68 9.62 -39.03 -0.38 -1.05 16 23 C 0.08 0.61 11.17 -17.60 -0.20 0.42 16 24 N -0.38 -3.70 10.02 -12.50 -0.13 -3.83 16 25 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.14 0.21 8.14 -51.92 -0.42 -0.21 16 27 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.17 1.73 7.25 -52.48 -0.38 1.35 16 29 H 0.40 3.74 6.62 -40.82 -0.27 3.47 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.15 0.70 6.54 -52.49 -0.34 0.35 16 38 H 0.18 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -37.95 345.97 -8.22 -46.17 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.76 Total: -2.46 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.38 Total: -14.01 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.27 Total: -38.70 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.92 Total: -31.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 19.82 SS G_CDS: -0.63 Total: 19.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.95 -8.22 -46.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194693196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.646 kcal (2) G-P(sol) polarization free energy of solvation -37.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds