Wall clock time and date at job start Fri Apr 10 2020 18:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42101 * 110.54256 * 2 1 4 4 O 1.42098 * 110.54223 * 223.24889 * 2 1 3 5 5 C 1.76201 * 104.44489 * 111.62402 * 2 1 3 6 6 C 1.38167 * 119.55498 * 269.97777 * 5 2 1 7 7 C 1.39796 * 119.00055 * 180.02562 * 6 5 2 8 8 C 1.48158 * 120.91943 * 179.97438 * 7 6 5 9 9 O 1.21512 * 119.99904 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99491 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99397 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46871 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47268 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47301 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99863 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99952 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00177 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99648 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47258 * 59.99607 * 18 16 14 20 20 H 1.48507 * 109.46905 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47191 * 299.99396 * 18 16 14 22 22 C 1.39830 * 118.15695 * 0.02562 * 7 6 5 23 23 C 1.38128 * 119.00127 * 0.02562 * 22 7 6 24 24 N 1.31804 * 119.55015 * 90.00315 * 5 2 1 25 25 H 1.08996 * 109.46816 * 308.37919 * 1 2 3 26 26 H 1.09005 * 109.46811 * 68.37228 * 1 2 3 27 27 H 1.08996 * 109.47116 * 188.37196 * 1 2 3 28 28 H 1.08004 * 120.49861 * 0.02562 * 6 5 2 29 29 H 0.96999 * 120.00567 * 0.02562 * 10 8 7 30 30 H 1.09001 * 109.47211 * 300.00040 * 11 10 8 31 31 H 1.09000 * 109.47296 * 60.00497 * 11 10 8 32 32 H 1.08998 * 109.47420 * 300.00521 * 12 11 10 33 33 H 1.09005 * 109.47258 * 59.99665 * 12 11 10 34 34 H 1.08993 * 109.47395 * 300.00293 * 13 12 11 35 35 H 1.09000 * 109.46871 * 60.00228 * 13 12 11 36 36 H 0.97001 * 120.00467 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.49915 * 180.02562 * 22 7 6 38 38 H 1.08008 * 119.55022 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4241 0.2453 2.6426 7 6 2.7733 -0.2660 3.8959 8 6 2.9673 0.6327 5.0577 9 8 2.8225 1.8322 4.9287 10 7 3.3034 0.1195 6.2577 11 6 3.4946 1.0082 7.4066 12 6 3.8685 0.1783 8.6365 13 6 4.0689 1.1064 9.8363 14 6 4.4377 0.2891 11.0475 15 1 4.5204 -0.7850 10.9694 16 6 4.6685 0.9124 12.2555 17 7 4.5672 2.2201 12.3507 18 14 5.1249 -0.1009 13.7570 19 1 6.3833 -0.8426 13.4898 20 1 5.3195 0.7999 14.9215 21 1 4.0353 -1.0652 14.0534 22 6 2.9355 -1.6491 4.0223 23 6 2.7464 -2.4498 2.9128 24 7 2.4158 -1.9267 1.7489 25 1 -0.3633 0.6380 0.8056 26 1 -0.3633 0.3788 -0.9554 27 1 -0.3633 -1.0167 0.1496 28 1 2.2895 1.3077 2.5021 29 1 3.4186 -0.8381 6.3608 30 1 4.2947 1.7159 7.1894 31 1 2.5710 1.5528 7.6025 32 1 3.0688 -0.5297 8.8539 33 1 4.7922 -0.3661 8.4404 34 1 4.8688 1.8140 9.6187 35 1 3.1453 1.6510 10.0325 36 1 4.7299 2.6586 13.2005 37 1 3.2045 -2.0848 4.9732 38 1 2.8690 -3.5193 3.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194693196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:55 Heat of formation + Delta-G solvation = -106.558140 kcal Electronic energy + Delta-G solvation = -22308.642138 eV Core-core repulsion = 18663.221091 eV Total energy + Delta-G solvation = -3645.421046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.85813 -40.30173 -38.22892 -37.11118 -37.07473 -35.35254 -34.19792 -33.02977 -32.60425 -30.34520 -28.83872 -26.38570 -25.31771 -24.45059 -22.45109 -22.17294 -20.28942 -19.37879 -18.56534 -18.25844 -17.56771 -17.29317 -17.05353 -16.85708 -16.77751 -16.46789 -16.30174 -15.69649 -15.50448 -15.02459 -14.99500 -14.28727 -14.05080 -13.98480 -13.80880 -13.58579 -13.56587 -13.23237 -13.11431 -12.72943 -12.57669 -12.50322 -12.42088 -11.98291 -11.78880 -11.69373 -11.39851 -11.30573 -11.21854 -10.79773 -10.72531 -10.55029 -10.27526 -8.19750 -6.31209 -1.04148 -0.73461 -0.44212 1.42180 1.44705 1.52498 1.52515 1.68839 1.83001 2.35561 2.41916 2.88365 2.91694 3.14357 3.29624 3.49520 3.64472 3.71061 3.77926 4.07879 4.12097 4.18024 4.23179 4.33832 4.48392 4.51838 4.66780 4.89697 4.91425 4.92839 5.15207 5.20830 5.28589 5.51139 5.69839 5.83831 6.20766 6.31223 6.36651 6.86568 6.94887 7.38617 8.92043 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.002106 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.037967 B =13293.787357 C =13787.318638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.616 4.616 2 S 2.508 3.492 3 O -0.967 6.967 4 O -0.955 6.955 5 C -0.441 4.441 6 C -0.049 4.049 7 C -0.113 4.113 8 C 0.551 3.449 9 O -0.571 6.571 10 N -0.699 5.699 11 C 0.127 3.873 12 C -0.102 4.102 13 C 0.022 3.978 14 C -0.541 4.541 15 H 0.069 0.931 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.072 4.072 23 C 0.085 3.915 24 N -0.399 5.399 25 H 0.153 0.847 26 H 0.164 0.836 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.418 0.582 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.071 0.929 34 H -0.009 1.009 35 H -0.007 1.007 36 H 0.263 0.737 37 H 0.187 0.813 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 -12.253 -23.753 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.771 4.771 2 S 2.686 3.314 3 O -0.964 6.964 4 O -0.952 6.952 5 C -0.657 4.657 6 C -0.071 4.071 7 C -0.125 4.125 8 C 0.338 3.662 9 O -0.451 6.451 10 N -0.351 5.351 11 C 0.004 3.996 12 C -0.140 4.140 13 C -0.015 4.015 14 C -0.579 4.579 15 H 0.087 0.913 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.092 4.092 23 C -0.076 4.076 24 N -0.109 5.109 25 H 0.171 0.829 26 H 0.182 0.818 27 H 0.175 0.825 28 H 0.176 0.824 29 H 0.257 0.743 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.010 0.990 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.204 0.796 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.622 -11.537 -25.021 29.184 hybrid contribution 0.291 0.212 2.606 2.631 sum -9.330 -11.325 -22.415 26.790 Atomic orbital electron populations 1.29988 1.17917 1.14554 1.14674 1.05341 0.80777 0.72940 0.72295 1.93598 1.80161 1.37193 1.85407 1.93551 1.79610 1.61802 1.60252 1.33425 1.13433 0.97119 1.21691 1.22176 0.91208 1.02278 0.91400 1.20435 1.02997 0.95248 0.93843 1.18454 0.76972 0.87442 0.83379 1.90798 1.52454 1.16883 1.84944 1.45823 1.68902 1.12163 1.08241 1.21369 1.00717 0.92932 0.84606 1.21611 1.01779 0.98267 0.92323 1.18946 0.95081 0.94707 0.92810 1.21657 1.46839 0.94342 0.95024 0.91332 1.26023 0.95449 0.96022 1.02685 1.70099 1.50671 1.10165 1.26627 0.85483 0.79250 0.78328 0.77871 1.19051 1.21410 1.18919 1.23124 0.91611 0.91490 1.02973 1.23810 0.94274 1.03083 0.86409 1.67709 1.05826 1.10950 1.26419 0.82877 0.81768 0.82543 0.82363 0.74333 0.92817 0.92470 0.90832 0.91071 0.99039 0.98873 0.92850 0.79594 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -2.43 10.80 113.37 1.22 -1.21 16 2 S 2.51 39.29 5.86 -56.49 -0.33 38.96 16 3 O -0.97 -22.10 17.10 -127.65 -2.18 -24.29 16 4 O -0.96 -21.64 17.73 -127.65 -2.26 -23.90 16 5 C -0.44 -8.16 6.53 84.68 0.55 -7.61 16 6 C -0.05 -1.04 9.07 22.63 0.21 -0.84 16 7 C -0.11 -2.31 5.91 -19.88 -0.12 -2.43 16 8 C 0.55 14.90 7.80 86.88 0.68 15.58 16 9 O -0.57 -20.66 16.45 -3.75 -0.06 -20.72 16 10 N -0.70 -16.70 5.51 -465.67 -2.57 -19.27 16 11 C 0.13 4.08 5.67 86.38 0.49 4.57 16 12 C -0.10 -3.56 5.27 30.59 0.16 -3.40 16 13 C 0.02 1.10 4.97 29.85 0.15 1.25 16 14 C -0.54 -29.02 9.11 25.60 0.23 -28.79 16 15 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 17 N -0.94 -56.10 13.29 21.45 0.28 -55.82 16 18 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 C -0.07 -0.87 9.62 22.63 0.22 -0.65 16 23 C 0.09 0.99 11.17 84.67 0.95 1.94 16 24 N -0.40 -6.99 10.02 -193.47 -1.94 -8.93 16 25 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.16 3.54 7.25 -2.91 -0.02 3.52 16 29 H 0.42 6.50 6.62 -92.71 -0.61 5.89 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.19 0.82 6.54 -2.91 -0.02 0.80 16 38 H 0.22 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -86.04 345.97 -1.36 -87.40 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 0.48 Total: 3.29 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 5.20 Total: -21.35 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -4.22 Total: -84.02 kcal Atomic # 8 Polarization: -64.41 SS G_CDS: -4.51 Total: -68.91 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 39.29 SS G_CDS: -0.33 Total: 38.96 kcal Total: -86.04 -1.36 -87.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194693196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.162 kcal (2) G-P(sol) polarization free energy of solvation -86.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds