Wall clock time and date at job start Fri Apr 10 2020 18:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42103 * 110.54313 * 2 1 4 4 O 1.42105 * 110.54703 * 223.25064 * 2 1 3 5 5 C 1.76206 * 104.45082 * 111.62499 * 2 1 3 6 6 C 1.38603 * 119.54822 * 90.00003 * 5 2 1 7 7 C 1.38587 * 119.34759 * 180.02562 * 6 5 2 8 8 C 1.38630 * 118.48820 * 0.28013 * 7 6 5 9 9 C 1.39274 * 119.06365 * 359.47638 * 8 7 6 10 10 C 1.48159 * 119.72373 * 180.23366 * 9 8 7 11 11 O 1.21512 * 120.00111 * 0.29790 * 10 9 8 12 12 N 1.34780 * 120.00149 * 180.29620 * 10 9 8 13 13 C 1.46496 * 120.00047 * 179.97438 * 12 10 9 14 14 C 1.53009 * 109.46806 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46589 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46728 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99682 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99976 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00256 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47096 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47294 * 119.99651 * 20 18 16 23 23 H 1.48500 * 109.46773 * 239.99427 * 20 18 16 24 24 N 1.31492 * 119.54801 * 270.02549 * 5 2 1 25 25 H 1.08994 * 109.47381 * 308.37130 * 1 2 3 26 26 H 1.09002 * 109.46726 * 68.37780 * 1 2 3 27 27 H 1.09003 * 109.46721 * 188.37281 * 1 2 3 28 28 H 1.07992 * 120.32569 * 359.97438 * 6 5 2 29 29 H 1.08002 * 120.75096 * 179.97438 * 7 6 5 30 30 H 1.08001 * 120.46712 * 179.70209 * 8 7 6 31 31 H 0.97001 * 119.99600 * 0.02562 * 12 10 9 32 32 H 1.09000 * 109.47213 * 299.99985 * 13 12 10 33 33 H 1.09000 * 109.47442 * 60.00577 * 13 12 10 34 34 H 1.09000 * 109.47036 * 299.99866 * 14 13 12 35 35 H 1.08995 * 109.46824 * 60.00454 * 14 13 12 36 36 H 1.09000 * 109.47226 * 299.99632 * 15 14 13 37 37 H 1.09000 * 109.47646 * 60.00357 * 15 14 13 38 38 H 0.97003 * 120.00346 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5862 6 6 2.4243 -1.9937 1.7572 7 6 2.7696 -2.4838 3.0066 8 6 2.9273 -1.5840 4.0494 9 6 2.7450 -0.2252 3.8040 10 6 2.9150 0.7497 4.9066 11 8 3.2174 0.3631 6.0182 12 7 2.7341 2.0654 4.6768 13 6 2.9016 3.0293 5.7672 14 6 2.6405 4.4428 5.2428 15 6 2.8161 5.4495 6.3815 16 6 2.5583 6.8417 5.8653 17 1 2.2960 6.9932 4.8286 18 6 2.6584 7.9220 6.7161 19 7 2.9784 7.7375 7.9783 20 14 2.3382 9.6476 6.0764 21 1 1.9980 9.5850 4.6323 22 1 1.2076 10.2516 6.8259 23 1 3.5552 10.4781 6.2623 24 7 2.4150 0.2031 2.5916 25 1 -0.3634 0.6379 0.8056 26 1 -0.3633 0.3787 -0.9554 27 1 -0.3633 -1.0168 0.1496 28 1 2.2886 -2.6686 0.9251 29 1 2.9078 -3.5431 3.1654 30 1 3.1913 -1.9315 5.0373 31 1 2.4923 2.3739 3.7895 32 1 2.1947 2.8017 6.5650 33 1 3.9187 2.9671 6.1541 34 1 3.3471 4.6706 4.4448 35 1 1.6233 4.5047 4.8562 36 1 2.1097 5.2219 7.1799 37 1 3.8334 5.3875 6.7678 38 1 3.0485 8.4975 8.5770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196416515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:06 Heat of formation + Delta-G solvation = -76.255996 kcal Electronic energy + Delta-G solvation = -22632.381238 eV Core-core repulsion = 18988.274191 eV Total energy + Delta-G solvation = -3644.107047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -40.99464 -39.05336 -37.52011 -36.34176 -35.52302 -33.59536 -33.02321 -32.25678 -31.04247 -29.99596 -27.05768 -25.08955 -24.63119 -22.96806 -20.94665 -20.53888 -19.50012 -18.45743 -17.74978 -16.74604 -16.59649 -16.54796 -16.20661 -15.81228 -15.59434 -15.33416 -14.57752 -14.43270 -14.33993 -13.82510 -13.66998 -13.62028 -13.57354 -12.91913 -12.50029 -12.40653 -12.27732 -12.01447 -11.82882 -11.75669 -11.45449 -10.90360 -10.73968 -10.63542 -10.56954 -10.42310 -10.05060 -9.99378 -9.85124 -9.40889 -9.08792 -8.84854 -8.35356 -5.99886 -4.02536 -0.48921 -0.02434 0.41273 2.23994 2.38390 3.03335 3.24489 3.32300 3.39784 3.43914 3.46123 3.54061 3.96900 4.26446 4.30216 4.33540 4.43071 4.47456 4.64114 4.68122 4.87682 5.17636 5.27694 5.36198 5.43772 5.69721 5.76593 5.84047 6.15524 6.39763 6.60969 6.78484 6.90887 7.01237 7.62429 7.65916 7.77741 7.99127 8.18359 8.40822 9.04429 9.61768 11.11489 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.002808 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.781708 B = 9968.341389 C =11429.456500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.509 3.491 3 O -0.907 6.907 4 O -0.931 6.931 5 C -0.433 4.433 6 C -0.074 4.074 7 C -0.094 4.094 8 C -0.063 4.063 9 C 0.071 3.929 10 C 0.563 3.437 11 O -0.535 6.535 12 N -0.700 5.700 13 C 0.114 3.886 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.367 5.367 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.412 0.588 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 -24.191 -15.919 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.683 3.317 3 O -0.904 6.904 4 O -0.928 6.928 5 C -0.653 4.653 6 C -0.095 4.095 7 C -0.120 4.120 8 C -0.083 4.083 9 C -0.072 4.072 10 C 0.347 3.653 11 O -0.412 6.412 12 N -0.350 5.350 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.080 5.080 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.177 0.823 31 H 0.248 0.752 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.049 -23.179 -15.672 28.432 hybrid contribution -0.555 -0.141 0.254 0.626 sum -5.604 -23.321 -15.418 28.513 Atomic orbital electron populations 1.30177 1.24624 1.12186 1.12622 1.05498 0.78322 0.74911 0.72982 1.93646 1.76839 1.35268 1.84661 1.93619 1.77866 1.62407 1.58874 1.33378 1.13025 0.99325 1.19603 1.22212 0.93158 0.95005 0.99090 1.21790 0.96930 1.01224 0.92103 1.22500 0.91717 0.92703 1.01410 1.21656 1.00009 0.93488 0.92024 1.17724 0.78484 0.82667 0.86468 1.90802 1.48377 1.79195 1.22792 1.46144 1.67870 1.05682 1.15308 1.21789 1.01974 0.88439 0.88659 1.21920 1.01027 0.91841 1.01281 1.19036 0.97545 0.92335 0.92440 1.21257 1.47036 0.91501 0.96095 0.92476 1.25029 0.95296 0.99300 0.94883 1.69976 1.48528 1.30807 1.04092 0.86522 0.77821 0.84532 0.79046 1.19679 1.21046 1.21023 1.67667 1.04769 1.37229 0.98304 0.84351 0.84404 0.85007 0.82241 0.82813 0.82333 0.75239 0.91331 0.91314 0.92383 0.92498 0.96268 0.96235 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.09 10.80 101.05 1.09 -1.00 16 2 S 2.51 18.80 5.86 -107.50 -0.63 18.17 16 3 O -0.91 -10.94 17.73 -57.54 -1.02 -11.96 16 4 O -0.93 -8.61 17.10 -57.54 -0.98 -9.60 16 5 C -0.43 -3.90 6.53 -17.56 -0.11 -4.02 16 6 C -0.07 -0.50 9.51 -39.32 -0.37 -0.87 16 7 C -0.09 -0.61 10.17 -39.31 -0.40 -1.01 16 8 C -0.06 -0.59 9.63 -39.05 -0.38 -0.97 16 9 C 0.07 0.88 6.75 -83.01 -0.56 0.32 16 10 C 0.56 8.72 7.81 -12.18 -0.10 8.63 16 11 O -0.53 -9.61 16.32 5.36 0.09 -9.53 16 12 N -0.70 -10.98 5.55 -61.15 -0.34 -11.32 16 13 C 0.11 2.03 5.67 -4.04 -0.02 2.01 16 14 C -0.12 -2.47 5.27 -26.73 -0.14 -2.61 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 N -0.37 -4.34 9.22 -9.01 -0.08 -4.42 16 25 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.14 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 28 H 0.16 0.60 7.56 -52.49 -0.40 0.20 16 29 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.16 1.34 7.64 -52.49 -0.40 0.94 16 31 H 0.41 5.90 7.80 -40.82 -0.32 5.59 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -38.24 347.99 -8.44 -46.68 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.89 Total: -1.18 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.54 Total: -12.52 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.31 Total: -41.99 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.92 Total: -31.08 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 18.80 SS G_CDS: -0.63 Total: 18.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.24 -8.44 -46.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196416515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.581 kcal (2) G-P(sol) polarization free energy of solvation -38.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds