Wall clock time and date at job start Fri Apr 10 2020 18:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48506 * 109.47066 * 269.99796 * 3 2 1 5 5 H 1.48496 * 109.47240 * 29.99643 * 3 2 1 6 6 H 1.48503 * 109.47512 * 149.99651 * 3 2 1 7 7 C 1.38814 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00342 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47069 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46660 * 304.99126 * 11 10 9 13 13 C 1.54811 * 109.46622 * 185.00368 * 11 10 9 14 14 N 1.45122 * 109.53064 * 172.10305 * 13 11 10 15 15 C 1.34770 * 118.75778 * 269.29166 * 14 13 11 16 16 O 1.21563 * 120.00198 * 177.58743 * 15 14 13 17 17 C 1.47753 * 119.99965 * 357.85708 * 15 14 13 18 18 C 1.39352 * 124.11863 * 186.65287 * 17 15 14 19 19 N 1.30093 * 112.14655 * 180.02562 * 18 17 15 20 20 S 1.55922 * 108.75335 * 0.02562 * 19 18 17 21 21 N 1.31496 * 124.11488 * 6.36236 * 17 15 14 22 22 C 1.47511 * 122.48494 * 89.56454 * 14 13 11 23 23 C 1.53952 * 110.82143 * 317.97627 * 22 14 13 24 24 C 1.51532 * 109.72742 * 320.30781 * 23 22 14 25 25 O 1.38010 * 109.47576 * 64.98637 * 11 10 9 26 26 H 0.96994 * 119.99668 * 0.02562 * 1 2 3 27 27 H 0.97009 * 119.99668 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.46824 * 59.99659 * 10 9 7 29 29 H 1.08999 * 109.47034 * 299.99934 * 10 9 7 30 30 H 1.08996 * 109.46560 * 52.08052 * 13 11 10 31 31 H 1.09002 * 109.45788 * 292.11745 * 13 11 10 32 32 H 1.08002 * 123.92704 * 0.02562 * 18 17 15 33 33 H 1.08998 * 109.16667 * 78.49474 * 22 14 13 34 34 H 1.09001 * 109.16388 * 197.69443 * 22 14 13 35 35 H 1.09000 * 109.46135 * 200.17512 * 23 22 14 36 36 H 1.09004 * 109.27719 * 80.32286 * 23 22 14 37 37 H 1.09002 * 109.59292 * 331.50824 * 24 23 22 38 38 H 1.09000 * 109.58745 * 211.07584 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3794 -4.7130 0.8416 13 6 1.8336 -6.1568 0.1272 14 7 0.8904 -7.2437 0.3143 15 6 0.5425 -7.5915 1.5690 16 8 -0.2788 -8.4691 1.7509 17 6 1.1548 -6.9020 2.7234 18 6 0.9611 -7.2781 4.0512 19 7 1.6091 -6.5105 4.8778 20 16 2.3792 -5.4296 4.0594 21 7 1.9532 -5.8620 2.6227 22 6 0.3027 -7.9862 -0.8167 23 6 -0.0929 -7.0272 -1.9543 24 6 -0.6916 -5.7627 -1.3724 25 8 0.3471 -4.8116 -1.1795 26 1 -0.4849 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6847 -3.7146 0.8905 29 1 2.6847 -3.7146 -0.8894 30 1 2.5065 -6.1084 0.9833 31 1 2.4124 -6.3303 -0.7800 32 1 0.3447 -8.1100 4.3583 33 1 1.0307 -8.7072 -1.1885 34 1 -0.5839 -8.5189 -0.4729 35 1 -0.8253 -7.5120 -2.5998 36 1 0.7933 -6.7747 -2.5366 37 1 -1.1629 -5.9881 -0.4157 38 1 -1.4334 -5.3589 -2.0615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199949014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:13 Heat of formation + Delta-G solvation = -1.393467 kcal Electronic energy + Delta-G solvation = -24601.505316 eV Core-core repulsion = 20992.937303 eV Total energy + Delta-G solvation = -3608.568013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52459 -40.95596 -39.59703 -36.74488 -36.43839 -35.01634 -34.02603 -32.71293 -30.28795 -28.73768 -27.76763 -26.64120 -24.78743 -23.95848 -22.50177 -22.06369 -20.76144 -20.46538 -19.21466 -18.34731 -17.90224 -17.70555 -17.11069 -16.76776 -16.65641 -16.36364 -15.79406 -15.78617 -15.10846 -14.86437 -14.75869 -14.54833 -13.88743 -13.76140 -13.59178 -13.27173 -13.09023 -12.76990 -12.74683 -12.51929 -12.32105 -12.24340 -12.09551 -11.90468 -11.79509 -11.59850 -11.50526 -11.00504 -10.93076 -10.57983 -10.27115 -9.67565 -8.96068 -7.90318 -5.19238 -0.66672 0.37630 0.43602 0.60536 1.49823 1.52249 1.60416 1.76691 1.89249 2.59481 2.75159 3.16526 3.44157 3.51222 3.70260 3.82971 4.03366 4.04881 4.08881 4.13704 4.33923 4.40484 4.45609 4.46732 4.56623 4.71921 4.79651 4.91576 4.95677 5.10013 5.17407 5.21210 5.28966 5.43240 5.52688 6.05659 6.30166 6.74752 6.81003 7.36682 8.12057 8.36085 9.33771 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.005002 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.015705 B = 5596.737877 C = 7278.122392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.740 5.740 10 C 0.169 3.831 11 C 0.111 3.889 12 H 0.021 0.979 13 C 0.071 3.929 14 N -0.586 5.586 15 C 0.597 3.403 16 O -0.549 6.549 17 C -0.009 4.009 18 C 0.091 3.909 19 N -0.593 5.593 20 S 0.762 5.238 21 N -0.547 5.547 22 C 0.107 3.893 23 C -0.152 4.152 24 C 0.068 3.932 25 O -0.400 6.400 26 H 0.249 0.751 27 H 0.371 0.629 28 H 0.049 0.951 29 H 0.026 0.974 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.229 0.771 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -19.224 3.288 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.382 5.382 10 C 0.042 3.958 11 C 0.051 3.949 12 H 0.039 0.961 13 C -0.055 4.055 14 N -0.317 5.317 15 C 0.381 3.619 16 O -0.427 6.427 17 C -0.181 4.181 18 C -0.101 4.101 19 N -0.435 5.435 20 S 0.805 5.195 21 N -0.399 5.399 22 C -0.013 4.013 23 C -0.190 4.190 24 C -0.008 4.008 25 O -0.319 6.319 26 H 0.058 0.942 27 H 0.202 0.798 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.245 0.755 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.576 -17.944 3.936 19.198 hybrid contribution -1.456 -0.301 -0.375 1.533 sum 4.121 -18.245 3.561 19.040 Atomic orbital electron populations 1.69853 1.06845 1.25890 1.59853 1.25587 0.96313 1.01184 1.03916 0.85122 0.77852 0.79337 0.77354 1.21651 1.22475 1.18838 1.19676 0.91617 0.85085 1.40720 0.90109 1.42461 1.05488 1.01025 1.89258 1.20713 0.92889 0.83500 0.98697 1.21881 0.92580 0.94679 0.85796 0.96073 1.23097 0.92159 0.84265 1.05983 1.47832 1.44169 1.34169 1.05528 1.17122 0.81030 0.81689 0.82094 1.90778 1.34059 1.32677 1.85208 1.22421 1.02240 0.96487 0.96974 1.23912 0.98990 1.00897 0.86285 1.72225 1.17932 1.13260 1.40042 1.79328 1.33716 1.23958 0.82496 1.72949 1.18000 1.17148 1.31767 1.22201 1.00018 0.93946 0.85161 1.22470 1.03372 0.95295 0.97888 1.22314 0.89353 0.89382 0.99777 1.86354 1.49202 1.57613 1.38731 0.94210 0.79809 0.93282 0.95637 0.84726 0.88603 0.75499 0.88847 0.89058 0.86616 0.90001 0.94707 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.93 13.06 21.65 0.28 -60.64 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.74 -38.66 5.54 -343.46 -1.90 -40.56 16 10 C 0.17 6.79 5.92 86.38 0.51 7.30 16 11 C 0.11 3.80 2.17 31.21 0.07 3.87 16 12 H 0.02 0.83 7.90 -2.38 -0.02 0.81 16 13 C 0.07 1.83 4.44 87.26 0.39 2.22 16 14 N -0.59 -14.27 2.18 -820.73 -1.79 -16.06 16 15 C 0.60 15.87 7.63 86.76 0.66 16.53 16 16 O -0.55 -16.16 16.11 -3.91 -0.06 -16.23 16 17 C -0.01 -0.21 6.55 41.98 0.28 0.06 16 18 C 0.09 1.98 11.23 85.22 0.96 2.93 16 19 N -0.59 -13.23 11.41 -92.46 -1.05 -14.28 16 20 S 0.76 15.86 23.69 -56.49 -1.34 14.52 16 21 N -0.55 -13.61 6.89 -80.58 -0.56 -14.17 16 22 C 0.11 2.07 6.21 86.51 0.54 2.61 16 23 C -0.15 -2.90 5.79 30.43 0.18 -2.72 16 24 C 0.07 1.86 6.37 71.50 0.46 2.31 16 25 O -0.40 -14.32 9.38 -117.80 -1.11 -15.43 16 26 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.37 21.31 7.65 -92.70 -0.71 20.60 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.14 3.39 4.65 -16.78 -0.08 3.31 16 31 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 32 H 0.23 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.85 6.97 -2.39 -0.02 1.83 16 35 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.61 8.01 -2.38 -0.02 1.59 16 37 H 0.03 1.02 7.41 -2.39 -0.02 1.00 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -71.65 326.56 0.17 -71.48 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.33 Total: 24.68 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.34 Total: 18.48 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -5.02 Total: -145.72 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.17 Total: -31.65 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 16 Polarization: 15.86 SS G_CDS: -1.34 Total: 14.52 kcal Total: -71.65 0.17 -71.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199949014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.087 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds