Wall clock time and date at job start Fri Apr 10 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99816 * 2 1 4 4 H 1.48494 * 109.46849 * 269.99521 * 3 2 1 5 5 H 1.48503 * 109.46862 * 149.99598 * 3 2 1 6 6 H 1.48496 * 109.47029 * 29.99836 * 3 2 1 7 7 C 1.38803 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00149 * 207.27111 * 7 2 1 9 9 N 1.36933 * 120.00505 * 27.27804 * 7 2 1 10 10 C 1.47429 * 125.64543 * 13.31838 * 9 7 2 11 11 C 1.55122 * 104.72375 * 155.81854 * 10 9 7 12 12 C 1.55159 * 101.48671 * 37.29269 * 11 10 9 13 13 H 1.08997 * 110.87267 * 82.77173 * 12 11 10 14 14 O 1.42902 * 110.71995 * 205.96881 * 12 11 10 15 15 C 1.42900 * 113.99794 * 204.97655 * 14 12 11 16 16 C 1.50701 * 109.46828 * 179.97438 * 15 14 12 17 17 O 1.21240 * 120.00282 * 0.02562 * 16 15 14 18 18 O 1.33959 * 119.99905 * 179.97438 * 16 15 14 19 19 N 1.21799 * 116.99941 * 180.02562 * 18 16 15 20 20 C 1.33880 * 122.76121 * 269.71175 * 19 18 16 21 21 O 1.21270 * 125.39677 * 359.97438 * 20 19 18 22 22 C 1.51313 * 109.20623 * 179.84055 * 20 19 18 23 23 C 1.54229 * 103.55507 * 0.38854 * 22 20 19 24 24 C 1.33874 * 122.76453 * 89.99959 * 19 18 16 25 25 O 1.21273 * 125.39569 * 359.97438 * 24 19 18 26 26 C 1.47019 * 125.65365 * 193.62301 * 9 7 2 27 27 H 0.96994 * 119.99479 * 185.84916 * 1 2 3 28 28 H 1.09001 * 110.36546 * 274.74550 * 10 9 7 29 29 H 1.08995 * 110.36676 * 37.06643 * 10 9 7 30 30 H 1.09002 * 111.19237 * 279.18719 * 11 10 9 31 31 H 1.09004 * 110.93886 * 155.28632 * 11 10 9 32 32 H 1.08999 * 109.47087 * 299.99636 * 15 14 12 33 33 H 1.09000 * 109.47156 * 60.00472 * 15 14 12 34 34 H 1.08992 * 110.80182 * 241.77786 * 22 20 19 35 35 H 1.09004 * 110.41577 * 118.80871 * 22 20 19 36 36 H 1.08999 * 110.60558 * 241.25501 * 23 22 20 37 37 H 1.09006 * 110.60428 * 118.29009 * 23 22 20 38 38 H 1.09000 * 109.88468 * 300.43953 * 26 9 7 39 39 H 1.09004 * 109.88232 * 61.60256 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5478 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0002 -1.2540 0.4291 9 7 1.4398 -2.3223 -0.5424 10 6 0.2379 -2.3469 -1.3959 11 6 0.3683 -3.6528 -2.2229 12 6 0.9848 -4.6200 -1.1779 13 1 0.2113 -5.0449 -0.5383 14 8 1.7287 -5.6549 -1.8241 15 6 1.8474 -6.8529 -1.0541 16 6 2.6457 -7.8703 -1.8278 17 8 3.0714 -7.5964 -2.9295 18 8 2.8859 -9.0769 -1.2978 19 7 3.5370 -9.8564 -1.9701 20 6 2.9757 -10.7162 -2.8293 21 8 1.7861 -10.8238 -3.0391 22 6 4.0610 -11.5302 -3.4994 23 6 5.3599 -10.9930 -2.8646 24 6 4.8723 -9.9279 -1.9067 25 8 5.5792 -9.2467 -1.1947 26 6 1.9207 -3.7003 -0.3658 27 1 -0.4849 -0.8357 0.0856 28 1 -0.6626 -2.3720 -0.7823 29 1 0.2239 -1.4799 -2.0563 30 1 1.0381 -3.5164 -3.0719 31 1 -0.6095 -4.0047 -2.5519 32 1 2.3532 -6.6320 -0.1142 33 1 0.8543 -7.2518 -0.8473 34 1 4.0621 -11.3617 -4.5762 35 1 3.9346 -12.5896 -3.2760 36 1 6.0071 -10.5572 -3.6257 37 1 5.8795 -11.7851 -2.3254 38 1 2.9412 -3.7876 -0.7387 39 1 1.8848 -3.9732 0.6890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224530123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:41 Heat of formation + Delta-G solvation = -82.511977 kcal Electronic energy + Delta-G solvation = -25869.169750 eV Core-core repulsion = 21782.038552 eV Total energy + Delta-G solvation = -4087.131198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.57389 -40.54651 -39.28343 -38.96418 -37.97845 -36.26977 -36.12400 -32.54300 -32.16333 -29.49336 -28.72518 -27.10758 -27.01330 -24.60387 -24.01288 -23.71431 -20.86698 -20.57282 -20.25227 -18.97410 -18.69070 -17.70187 -17.59426 -16.99021 -16.79299 -16.28672 -16.14727 -15.20092 -14.92286 -14.86713 -14.63386 -14.31720 -14.15568 -13.97655 -13.67335 -13.55548 -13.14463 -12.66068 -12.61281 -12.31256 -12.05066 -11.80658 -11.70414 -11.38187 -11.27780 -10.83889 -10.67314 -10.48777 -10.39181 -10.17144 -10.09884 -10.02777 -9.63039 -9.42764 -8.43777 -6.98399 -6.10554 -3.13889 0.81777 0.99309 1.56120 1.90397 2.66183 3.40550 3.41478 3.52755 3.55472 3.68685 3.71492 3.90230 4.18649 4.53893 4.60020 4.77632 4.83025 4.89201 4.91349 4.93730 5.11214 5.18838 5.37054 5.43965 5.62383 5.73800 5.74111 5.97929 6.17169 6.32383 6.37071 6.52924 6.54654 6.74914 6.92413 6.99048 7.24064 7.75900 7.93836 8.46704 9.00305 9.80262 10.32652 11.22936 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.002574 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.223719 B =10873.991081 C =11428.390456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.026 4.026 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.335 4.335 8 H 0.068 0.932 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.128 4.128 12 C 0.076 3.924 13 H 0.074 0.926 14 O -0.357 6.357 15 C 0.079 3.921 16 C 0.423 3.577 17 O -0.457 6.457 18 O -0.065 6.065 19 N -0.406 5.406 20 C 0.510 3.490 21 O -0.454 6.454 22 C -0.145 4.145 23 C -0.145 4.145 24 C 0.509 3.491 25 O -0.451 6.451 26 C 0.115 3.885 27 H 0.269 0.731 28 H 0.029 0.971 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.038 0.962 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 -27.233 -5.776 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.227 4.227 3 Si 0.899 3.101 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.463 4.463 8 H 0.086 0.914 9 N -0.330 5.330 10 C 0.019 3.981 11 C -0.166 4.166 12 C 0.019 3.981 13 H 0.091 0.909 14 O -0.275 6.275 15 C 0.000 4.000 16 C 0.262 3.738 17 O -0.337 6.337 18 O -0.085 6.085 19 N -0.182 5.182 20 C 0.301 3.699 21 O -0.322 6.322 22 C -0.185 4.185 23 C -0.185 4.185 24 C 0.299 3.701 25 O -0.318 6.318 26 C -0.011 4.011 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.055 0.945 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.076 -25.089 -6.099 26.771 hybrid contribution 0.022 -1.527 0.447 1.591 sum 7.098 -26.616 -5.652 28.120 Atomic orbital electron populations 1.70770 1.06587 1.30254 1.48678 1.25758 0.96485 1.00971 0.99520 0.83454 0.74420 0.75673 0.76564 1.22013 1.21881 1.21588 1.19818 0.99424 0.87611 1.39426 0.91442 1.44451 1.31134 1.00848 1.56566 1.21628 0.90284 0.94220 0.91943 1.22992 0.99896 0.95634 0.98099 1.23406 0.92845 0.86568 0.95329 0.90851 1.88020 1.75770 1.21405 1.42332 1.21674 0.99510 0.85070 0.93768 1.25436 0.78909 0.82548 0.86886 1.90839 1.46101 1.77249 1.19531 1.85421 1.62788 1.22111 1.38190 1.43741 1.07483 1.27055 1.39901 1.21688 0.90634 0.80020 0.77561 1.90849 1.15526 1.65622 1.60213 1.22434 0.90747 1.02026 1.03273 1.22437 0.98921 0.98056 0.99074 1.21701 0.80326 0.84922 0.83118 1.90869 1.58244 1.44106 1.38605 1.21764 0.96672 0.86384 0.96290 0.91946 0.95286 0.92172 0.90398 0.91144 0.87914 0.88095 0.84995 0.85056 0.85007 0.85009 0.94451 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.10 12.82 55.49 0.71 -27.38 16 2 C -0.03 -0.77 5.09 -17.43 -0.09 -0.85 16 3 Si 1.07 25.93 30.00 -169.99 -5.10 20.84 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.34 -9.74 10.05 -15.06 -0.15 -9.89 16 8 H 0.07 1.96 7.96 -52.48 -0.42 1.54 16 9 N -0.60 -15.78 3.33 -169.94 -0.57 -16.34 16 10 C 0.14 3.42 5.22 -2.41 -0.01 3.41 16 11 C -0.13 -2.43 6.82 -24.47 -0.17 -2.59 16 12 C 0.08 1.36 3.40 -24.90 -0.08 1.27 16 13 H 0.07 1.13 7.88 -51.93 -0.41 0.72 16 14 O -0.36 -6.17 9.60 -55.15 -0.53 -6.70 16 15 C 0.08 1.03 6.40 36.01 0.23 1.26 16 16 C 0.42 6.14 7.93 36.01 0.29 6.43 16 17 O -0.46 -8.08 16.56 -25.81 -0.43 -8.50 16 18 O -0.07 -0.82 9.81 -16.62 -0.16 -0.99 16 19 N -0.41 -4.38 2.04 -11.38 -0.02 -4.41 16 20 C 0.51 4.63 8.06 -11.08 -0.09 4.54 16 21 O -0.45 -5.75 17.90 -11.45 -0.21 -5.95 16 22 C -0.15 -0.40 7.03 -26.94 -0.19 -0.59 16 23 C -0.15 -0.43 7.03 -26.94 -0.19 -0.61 16 24 C 0.51 4.79 8.05 -11.09 -0.09 4.70 16 25 O -0.45 -6.02 17.90 -11.46 -0.21 -6.22 16 26 C 0.12 2.50 7.01 -3.07 -0.02 2.48 16 27 H 0.27 8.13 5.83 -40.82 -0.24 7.89 16 28 H 0.03 0.71 6.84 -51.93 -0.36 0.35 16 29 H 0.06 1.56 7.73 -51.93 -0.40 1.15 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.13 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.13 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -39.71 340.92 -6.77 -46.49 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -4.84 Total: -5.51 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -0.57 Total: 9.54 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.12 Total: -48.13 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.53 Total: -28.36 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.10 Total: 20.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -39.71 -6.77 -46.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224530123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.023 kcal (2) G-P(sol) polarization free energy of solvation -39.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds