Wall clock time and date at job start Fri Apr 10 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99816 * 2 1 4 4 H 1.48494 * 109.46849 * 269.99521 * 3 2 1 5 5 H 1.48503 * 109.46862 * 149.99598 * 3 2 1 6 6 H 1.48496 * 109.47029 * 29.99836 * 3 2 1 7 7 C 1.38803 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00149 * 207.27111 * 7 2 1 9 9 N 1.36933 * 120.00505 * 27.27804 * 7 2 1 10 10 C 1.47429 * 125.64543 * 13.31838 * 9 7 2 11 11 C 1.55122 * 104.72375 * 155.81854 * 10 9 7 12 12 C 1.55159 * 101.48671 * 37.29269 * 11 10 9 13 13 H 1.08997 * 110.87267 * 82.77173 * 12 11 10 14 14 O 1.42902 * 110.71995 * 205.96881 * 12 11 10 15 15 C 1.42900 * 113.99794 * 204.97655 * 14 12 11 16 16 C 1.50701 * 109.46828 * 179.97438 * 15 14 12 17 17 O 1.21240 * 120.00282 * 0.02562 * 16 15 14 18 18 O 1.33959 * 119.99905 * 179.97438 * 16 15 14 19 19 N 1.21799 * 116.99941 * 180.02562 * 18 16 15 20 20 C 1.33880 * 122.76121 * 269.71175 * 19 18 16 21 21 O 1.21270 * 125.39677 * 359.97438 * 20 19 18 22 22 C 1.51313 * 109.20623 * 179.84055 * 20 19 18 23 23 C 1.54229 * 103.55507 * 0.38854 * 22 20 19 24 24 C 1.33874 * 122.76453 * 89.99959 * 19 18 16 25 25 O 1.21273 * 125.39569 * 359.97438 * 24 19 18 26 26 C 1.47019 * 125.65365 * 193.62301 * 9 7 2 27 27 H 0.96994 * 119.99479 * 185.84916 * 1 2 3 28 28 H 1.09001 * 110.36546 * 274.74550 * 10 9 7 29 29 H 1.08995 * 110.36676 * 37.06643 * 10 9 7 30 30 H 1.09002 * 111.19237 * 279.18719 * 11 10 9 31 31 H 1.09004 * 110.93886 * 155.28632 * 11 10 9 32 32 H 1.08999 * 109.47087 * 299.99636 * 15 14 12 33 33 H 1.09000 * 109.47156 * 60.00472 * 15 14 12 34 34 H 1.08992 * 110.80182 * 241.77786 * 22 20 19 35 35 H 1.09004 * 110.41577 * 118.80871 * 22 20 19 36 36 H 1.08999 * 110.60558 * 241.25501 * 23 22 20 37 37 H 1.09006 * 110.60428 * 118.29009 * 23 22 20 38 38 H 1.09000 * 109.88468 * 300.43953 * 26 9 7 39 39 H 1.09004 * 109.88232 * 61.60256 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5478 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0002 -1.2540 0.4291 9 7 1.4398 -2.3223 -0.5424 10 6 0.2379 -2.3469 -1.3959 11 6 0.3683 -3.6528 -2.2229 12 6 0.9848 -4.6200 -1.1779 13 1 0.2113 -5.0449 -0.5383 14 8 1.7287 -5.6549 -1.8241 15 6 1.8474 -6.8529 -1.0541 16 6 2.6457 -7.8703 -1.8278 17 8 3.0714 -7.5964 -2.9295 18 8 2.8859 -9.0769 -1.2978 19 7 3.5370 -9.8564 -1.9701 20 6 2.9757 -10.7162 -2.8293 21 8 1.7861 -10.8238 -3.0391 22 6 4.0610 -11.5302 -3.4994 23 6 5.3599 -10.9930 -2.8646 24 6 4.8723 -9.9279 -1.9067 25 8 5.5792 -9.2467 -1.1947 26 6 1.9207 -3.7003 -0.3658 27 1 -0.4849 -0.8357 0.0856 28 1 -0.6626 -2.3720 -0.7823 29 1 0.2239 -1.4799 -2.0563 30 1 1.0381 -3.5164 -3.0719 31 1 -0.6095 -4.0047 -2.5519 32 1 2.3532 -6.6320 -0.1142 33 1 0.8543 -7.2518 -0.8473 34 1 4.0621 -11.3617 -4.5762 35 1 3.9346 -12.5896 -3.2760 36 1 6.0071 -10.5572 -3.6257 37 1 5.8795 -11.7851 -2.3254 38 1 2.9412 -3.7876 -0.7387 39 1 1.8848 -3.9732 0.6890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224530123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:41 Heat of formation + Delta-G solvation = -109.089645 kcal Electronic energy + Delta-G solvation = -25870.322244 eV Core-core repulsion = 21782.038552 eV Total energy + Delta-G solvation = -4088.283692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.40097 -41.42445 -40.29119 -40.07750 -39.24257 -37.74483 -36.99021 -34.46621 -32.91430 -31.23907 -30.02206 -28.73611 -27.54867 -26.35204 -25.21441 -24.26508 -22.23923 -22.12440 -21.67757 -19.85182 -19.75286 -19.56995 -18.50836 -18.25809 -17.52978 -17.25308 -17.02210 -16.53184 -16.30192 -15.89585 -15.64602 -15.48776 -15.34964 -15.24286 -15.11989 -14.63452 -14.22936 -13.99748 -13.89908 -13.73910 -13.34675 -12.76709 -12.72551 -12.68663 -12.53148 -12.42987 -12.20809 -12.14852 -11.90535 -11.69608 -11.63789 -11.15326 -11.14452 -10.91736 -10.58029 -9.11005 -8.38559 -5.38508 0.14527 0.17303 0.46507 1.24941 1.55451 1.63215 1.73472 1.81434 2.57216 2.72028 2.92495 3.03170 3.13042 3.42518 3.42759 3.54222 3.58822 3.79286 3.94893 3.98415 4.00765 4.10636 4.33498 4.47810 4.64920 4.74364 4.77146 4.78980 4.81764 4.84763 4.87212 4.98298 5.11477 5.19444 5.58005 5.74428 5.89114 5.95349 6.26237 6.83649 7.03597 7.63450 8.19186 8.95205 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.002574 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.223719 B =10873.991081 C =11428.390456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.076 4.076 3 Si 1.119 2.881 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.351 4.351 8 H 0.059 0.941 9 N -0.627 5.627 10 C 0.148 3.852 11 C -0.116 4.116 12 C 0.095 3.905 13 H 0.110 0.890 14 O -0.377 6.377 15 C 0.071 3.929 16 C 0.424 3.576 17 O -0.499 6.499 18 O -0.069 6.069 19 N -0.423 5.423 20 C 0.501 3.499 21 O -0.499 6.499 22 C -0.126 4.126 23 C -0.127 4.127 24 C 0.498 3.502 25 O -0.503 6.503 26 C 0.110 3.890 27 H 0.259 0.741 28 H 0.023 0.977 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.022 0.978 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -29.822 -6.467 31.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.272 4.272 3 Si 0.943 3.057 4 H -0.212 1.212 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.479 4.479 8 H 0.076 0.924 9 N -0.355 5.355 10 C 0.022 3.978 11 C -0.154 4.154 12 C 0.037 3.963 13 H 0.127 0.873 14 O -0.296 6.296 15 C -0.007 4.007 16 C 0.266 3.734 17 O -0.382 6.382 18 O -0.088 6.088 19 N -0.200 5.200 20 C 0.295 3.705 21 O -0.370 6.370 22 C -0.165 4.165 23 C -0.166 4.166 24 C 0.293 3.707 25 O -0.374 6.374 26 C -0.016 4.016 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.189 0.811 36 H 0.172 0.828 37 H 0.189 0.811 38 H 0.040 0.960 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.925 -27.745 -6.785 29.641 hybrid contribution -0.197 -0.852 0.691 1.114 sum 7.728 -28.597 -6.094 30.243 Atomic orbital electron populations 1.70871 1.07408 1.29783 1.50787 1.27151 0.96657 1.04256 0.99097 0.82797 0.73989 0.71873 0.77020 1.21191 1.19874 1.21471 1.20051 0.99267 0.89247 1.39323 0.92353 1.44718 1.31844 1.02042 1.56936 1.21543 0.89224 0.95491 0.91498 1.22866 1.01820 0.93541 0.97207 1.23166 0.92366 0.86244 0.94491 0.87272 1.87974 1.75867 1.22518 1.43194 1.22050 1.01710 0.83497 0.93482 1.25766 0.78137 0.83206 0.86327 1.90808 1.47980 1.78168 1.21271 1.85378 1.63073 1.21722 1.38604 1.44607 1.08418 1.26706 1.40287 1.22976 0.91364 0.79521 0.76636 1.90820 1.17748 1.66967 1.61501 1.22694 0.87378 1.02758 1.03658 1.22699 0.99262 0.96643 0.97973 1.23032 0.79417 0.85318 0.82971 1.90837 1.59036 1.46481 1.41003 1.21917 0.96843 0.85361 0.97476 0.92995 0.95934 0.95537 0.91490 0.87490 0.86040 0.84220 0.82626 0.81092 0.82789 0.81126 0.95998 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 12.82 21.65 0.28 -58.56 16 2 C -0.08 -4.47 5.09 84.86 0.43 -4.04 16 3 Si 1.12 52.82 30.00 68.60 2.06 54.88 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.35 -20.80 10.05 84.03 0.84 -19.95 16 8 H 0.06 3.47 7.96 -2.91 -0.02 3.45 16 9 N -0.63 -33.47 3.33 -691.58 -2.30 -35.77 16 10 C 0.15 7.09 5.22 86.93 0.45 7.55 16 11 C -0.12 -4.30 6.82 32.06 0.22 -4.08 16 12 C 0.09 3.23 3.40 31.78 0.11 3.34 16 13 H 0.11 2.98 7.88 -2.39 -0.02 2.96 16 14 O -0.38 -12.55 9.60 -129.94 -1.25 -13.80 16 15 C 0.07 1.73 6.40 71.24 0.46 2.19 16 16 C 0.42 12.27 7.93 71.24 0.57 12.84 16 17 O -0.50 -17.87 16.56 27.12 0.45 -17.43 16 18 O -0.07 -1.75 9.81 103.59 1.02 -0.73 16 19 N -0.42 -8.87 2.04 -427.71 -0.87 -9.75 16 20 C 0.50 8.37 8.06 87.99 0.71 9.08 16 21 O -0.50 -12.39 17.90 13.27 0.24 -12.16 16 22 C -0.13 -0.18 7.03 30.46 0.21 0.03 16 23 C -0.13 -0.25 7.03 30.46 0.21 -0.03 16 24 C 0.50 8.83 8.05 87.99 0.71 9.54 16 25 O -0.50 -13.53 17.90 13.26 0.24 -13.29 16 26 C 0.11 4.76 7.01 86.73 0.61 5.37 16 27 H 0.26 16.12 5.83 -92.71 -0.54 15.58 16 28 H 0.02 1.12 6.84 -2.39 -0.02 1.10 16 29 H 0.03 1.42 7.73 -2.39 -0.02 1.40 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.14 2.36 8.11 -2.39 -0.02 2.34 16 34 H 0.16 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.17 -0.99 8.14 -2.39 -0.02 -1.01 16 36 H 0.15 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.17 -0.88 8.14 -2.38 -0.02 -0.90 16 38 H 0.02 1.01 8.06 -2.39 -0.02 0.99 16 39 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -92.85 340.92 6.70 -86.16 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: 1.31 Total: -1.39 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 5.53 Total: 21.83 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -2.90 Total: -104.08 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: 0.69 Total: -57.41 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 2.06 Total: 54.88 kcal Total: -92.85 6.70 -86.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224530123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.934 kcal (2) G-P(sol) polarization free energy of solvation -92.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds