Wall clock time and date at job start Fri Apr 10 2020 18:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48495 * 109.47147 * 274.14233 * 3 2 1 5 5 H 1.48500 * 109.47054 * 34.13970 * 3 2 1 6 6 H 1.48501 * 109.47259 * 154.13858 * 3 2 1 7 7 C 1.38810 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00417 * 170.42108 * 7 2 1 9 9 N 1.36939 * 119.99970 * 350.41685 * 7 2 1 10 10 C 1.47434 * 125.64521 * 349.99142 * 9 7 2 11 11 C 1.54908 * 104.82819 * 204.08729 * 10 9 7 12 12 C 1.55156 * 101.58258 * 322.99050 * 11 10 9 13 13 H 1.08996 * 110.72152 * 277.13552 * 12 11 10 14 14 O 1.42911 * 110.86903 * 153.93704 * 12 11 10 15 15 C 1.42901 * 113.99869 * 152.54749 * 14 12 11 16 16 C 1.50697 * 109.46959 * 180.02562 * 15 14 12 17 17 O 1.21232 * 120.00035 * 359.97438 * 16 15 14 18 18 O 1.33955 * 119.99474 * 180.02562 * 16 15 14 19 19 N 1.21804 * 116.99537 * 179.97438 * 18 16 15 20 20 C 1.33884 * 122.76057 * 269.70488 * 19 18 16 21 21 O 1.21270 * 125.39418 * 359.97438 * 20 19 18 22 22 C 1.51314 * 109.20698 * 179.84169 * 20 19 18 23 23 C 1.54236 * 103.55298 * 0.39173 * 22 20 19 24 24 C 1.33876 * 122.76714 * 89.99717 * 19 18 16 25 25 O 1.21272 * 125.39264 * 0.02562 * 24 19 18 26 26 C 1.47015 * 125.65073 * 169.94144 * 9 7 2 27 27 H 0.97002 * 120.00714 * 0.02562 * 1 2 3 28 28 H 1.08993 * 110.36656 * 322.92652 * 10 9 7 29 29 H 1.08999 * 110.36395 * 85.14078 * 10 9 7 30 30 H 1.09005 * 111.00402 * 204.91321 * 11 10 9 31 31 H 1.09005 * 111.00400 * 81.06378 * 11 10 9 32 32 H 1.09005 * 109.46865 * 300.00240 * 15 14 12 33 33 H 1.08997 * 109.46890 * 59.99560 * 15 14 12 34 34 H 1.08993 * 110.79903 * 241.78562 * 22 20 19 35 35 H 1.09000 * 110.54647 * 118.87105 * 22 20 19 36 36 H 1.09007 * 110.60127 * 241.25549 * 23 22 20 37 37 H 1.08994 * 110.60740 * 118.29231 * 23 22 20 38 38 H 1.09001 * 109.88476 * 59.56780 * 26 9 7 39 39 H 1.08996 * 109.88911 * 298.39896 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4100 2.0970 -1.3964 5 1 1.4940 2.6258 0.7857 6 1 3.5887 1.4166 0.6107 7 6 2.0103 -1.2021 -0.0005 8 1 3.0789 -1.2085 -0.1562 9 7 1.3400 -2.3799 0.1964 10 6 -0.0653 -2.5076 0.6237 11 6 -0.1540 -3.9076 1.2810 12 6 0.7933 -4.7377 0.3750 13 1 0.2728 -5.0740 -0.5216 14 8 1.3359 -5.8500 1.0897 15 6 1.6808 -6.9614 0.2603 16 6 2.2392 -8.0708 1.1137 17 8 2.3330 -7.9241 2.3134 18 8 2.6329 -9.2187 0.5464 19 7 3.0760 -10.0780 1.2872 20 6 4.3765 -10.1721 1.5913 21 8 5.2490 -9.4371 1.1800 22 6 4.5846 -11.3389 2.5320 23 6 3.1653 -11.9150 2.7128 24 6 2.3038 -11.0096 1.8599 25 8 1.1038 -11.1120 1.7171 26 6 1.9021 -3.7262 0.0157 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3135 -1.7320 1.3481 29 1 -0.7306 -2.4482 -0.2376 30 1 -1.1722 -4.2946 1.2401 31 1 0.2112 -3.8810 2.3077 32 1 0.7911 -7.3163 -0.2601 33 1 2.4291 -6.6518 -0.4693 34 1 4.9853 -10.9993 3.4870 35 1 5.2449 -12.0802 2.0819 36 1 2.8602 -11.8620 3.7579 37 1 3.1191 -12.9418 2.3502 38 1 2.7572 -3.8629 0.6777 39 1 2.2078 -3.8643 -1.0214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224530124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:46 Heat of formation + Delta-G solvation = -80.862398 kcal Electronic energy + Delta-G solvation = -25824.414853 eV Core-core repulsion = 21737.355187 eV Total energy + Delta-G solvation = -4087.059666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.53557 -40.50659 -39.25388 -38.85169 -37.86798 -36.23555 -35.89122 -32.39837 -32.08672 -29.51991 -28.60708 -27.06248 -26.98557 -24.63934 -24.01658 -23.68448 -20.81273 -20.41425 -20.22652 -18.94113 -18.63609 -17.65856 -17.05072 -16.82792 -16.68132 -16.22597 -16.08556 -15.05220 -14.86900 -14.74564 -14.64868 -14.60736 -14.17080 -13.96212 -13.67095 -13.51013 -12.74604 -12.56253 -12.44183 -12.02528 -11.89647 -11.71187 -11.62468 -11.35338 -11.24979 -10.88921 -10.79226 -10.46930 -10.36147 -10.12087 -10.09129 -9.86362 -9.70714 -9.37019 -8.60516 -6.83082 -5.76261 -3.09201 0.84627 1.03393 1.61197 1.93417 2.71620 3.40052 3.43202 3.44235 3.45851 3.48477 3.71226 3.99539 4.21031 4.49649 4.60516 4.80038 4.90106 4.93608 4.95494 4.96837 5.28358 5.35251 5.47442 5.63173 5.75781 5.76894 5.78535 6.21820 6.43185 6.49415 6.51826 6.57587 6.63748 6.80000 7.33238 7.46212 7.54417 7.76341 7.97789 8.23516 9.17289 9.78881 10.45210 11.37095 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.031165 B = 0.002556 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.231379 B =10952.927609 C =11539.919860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.174 3.826 11 C -0.138 4.138 12 C 0.076 3.924 13 H 0.073 0.927 14 O -0.358 6.358 15 C 0.079 3.921 16 C 0.422 3.578 17 O -0.457 6.457 18 O -0.066 6.066 19 N -0.405 5.405 20 C 0.509 3.491 21 O -0.451 6.451 22 C -0.145 4.145 23 C -0.145 4.145 24 C 0.510 3.490 25 O -0.454 6.454 26 C 0.115 3.885 27 H 0.254 0.746 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.035 0.965 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 -27.423 3.420 28.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.049 3.951 11 C -0.177 4.177 12 C 0.019 3.981 13 H 0.091 0.909 14 O -0.276 6.276 15 C 0.000 4.000 16 C 0.262 3.738 17 O -0.337 6.337 18 O -0.086 6.086 19 N -0.182 5.182 20 C 0.300 3.700 21 O -0.319 6.319 22 C -0.185 4.185 23 C -0.185 4.185 24 C 0.301 3.699 25 O -0.322 6.322 26 C -0.011 4.011 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.053 0.947 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.510 -26.824 3.743 27.638 hybrid contribution 0.326 1.094 -0.377 1.203 sum 5.836 -25.729 3.366 26.597 Atomic orbital electron populations 1.69936 1.05000 1.25312 1.56399 1.24829 0.95663 0.97871 1.01997 0.86100 0.78788 0.83339 0.77517 1.21569 1.21547 1.20550 1.19029 0.91214 0.82623 1.42878 0.90551 1.44352 1.09504 0.99547 1.79378 1.21443 0.85895 0.90715 0.97085 1.23174 0.97055 0.97671 0.99781 1.23426 0.95012 0.84609 0.95100 0.90936 1.88028 1.83384 1.23353 1.32864 1.21680 1.01501 0.85343 0.91486 1.25471 0.75318 0.83338 0.89676 1.90836 1.48170 1.79232 1.15485 1.85423 1.73164 1.20855 1.29130 1.43730 1.09693 1.20128 1.44610 1.21686 0.80638 0.86885 0.80822 1.90865 1.44574 1.44902 1.51513 1.22430 0.98666 0.96082 1.01333 1.22433 0.92706 1.00662 1.02689 1.21680 0.88075 0.81200 0.78965 1.90850 1.12727 1.70131 1.58501 1.21727 0.95023 0.86610 0.97752 0.93618 0.90710 0.95138 0.91510 0.90901 0.88146 0.87965 0.85006 0.85061 0.85041 0.85049 0.94688 0.95746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.68 55.49 0.59 -26.55 16 2 C -0.01 -0.20 5.40 -17.43 -0.09 -0.30 16 3 Si 0.91 22.32 29.56 -169.99 -5.03 17.30 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.54 10.24 -15.06 -0.15 -6.69 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 9 N -0.60 -15.79 3.39 -170.08 -0.58 -16.36 16 10 C 0.17 4.24 5.42 -2.52 -0.01 4.23 16 11 C -0.14 -2.72 6.82 -24.58 -0.17 -2.88 16 12 C 0.08 1.38 3.42 -24.90 -0.09 1.29 16 13 H 0.07 1.14 7.85 -51.93 -0.41 0.73 16 14 O -0.36 -6.28 9.61 -55.15 -0.53 -6.81 16 15 C 0.08 1.04 6.38 36.00 0.23 1.27 16 16 C 0.42 6.19 7.93 36.00 0.29 6.47 16 17 O -0.46 -8.15 16.56 -25.81 -0.43 -8.58 16 18 O -0.07 -0.84 9.82 -16.61 -0.16 -1.00 16 19 N -0.41 -4.41 2.04 -11.38 -0.02 -4.44 16 20 C 0.51 4.82 8.06 -11.08 -0.09 4.73 16 21 O -0.45 -6.02 17.90 -11.45 -0.20 -6.23 16 22 C -0.15 -0.44 7.03 -26.94 -0.19 -0.63 16 23 C -0.15 -0.42 7.03 -26.94 -0.19 -0.61 16 24 C 0.51 4.69 8.05 -11.09 -0.09 4.60 16 25 O -0.45 -5.80 17.90 -11.45 -0.21 -6.01 16 26 C 0.12 2.50 7.02 -3.07 -0.02 2.48 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.07 2.02 6.93 -51.93 -0.36 1.66 16 29 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 36 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.13 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -38.63 341.88 -6.94 -45.57 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -4.95 Total: -6.01 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -0.58 Total: 13.96 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.01 Total: -47.36 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.53 Total: -28.62 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.63 -6.94 -45.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224530124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.288 kcal (2) G-P(sol) polarization free energy of solvation -38.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds