Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48495 * 109.47147 * 274.14233 * 3 2 1 5 5 H 1.48500 * 109.47054 * 34.13970 * 3 2 1 6 6 H 1.48501 * 109.47259 * 154.13858 * 3 2 1 7 7 C 1.38810 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00417 * 170.42108 * 7 2 1 9 9 N 1.36939 * 119.99970 * 350.41685 * 7 2 1 10 10 C 1.47434 * 125.64521 * 349.99142 * 9 7 2 11 11 C 1.54908 * 104.82819 * 204.08729 * 10 9 7 12 12 C 1.55156 * 101.58258 * 322.99050 * 11 10 9 13 13 H 1.08996 * 110.72152 * 277.13552 * 12 11 10 14 14 O 1.42911 * 110.86903 * 153.93704 * 12 11 10 15 15 C 1.42901 * 113.99869 * 152.54749 * 14 12 11 16 16 C 1.50697 * 109.46959 * 180.02562 * 15 14 12 17 17 O 1.21232 * 120.00035 * 359.97438 * 16 15 14 18 18 O 1.33955 * 119.99474 * 180.02562 * 16 15 14 19 19 N 1.21804 * 116.99537 * 179.97438 * 18 16 15 20 20 C 1.33884 * 122.76057 * 269.70488 * 19 18 16 21 21 O 1.21270 * 125.39418 * 359.97438 * 20 19 18 22 22 C 1.51314 * 109.20698 * 179.84169 * 20 19 18 23 23 C 1.54236 * 103.55298 * 0.39173 * 22 20 19 24 24 C 1.33876 * 122.76714 * 89.99717 * 19 18 16 25 25 O 1.21272 * 125.39264 * 0.02562 * 24 19 18 26 26 C 1.47015 * 125.65073 * 169.94144 * 9 7 2 27 27 H 0.97002 * 120.00714 * 0.02562 * 1 2 3 28 28 H 1.08993 * 110.36656 * 322.92652 * 10 9 7 29 29 H 1.08999 * 110.36395 * 85.14078 * 10 9 7 30 30 H 1.09005 * 111.00402 * 204.91321 * 11 10 9 31 31 H 1.09005 * 111.00400 * 81.06378 * 11 10 9 32 32 H 1.09005 * 109.46865 * 300.00240 * 15 14 12 33 33 H 1.08997 * 109.46890 * 59.99560 * 15 14 12 34 34 H 1.08993 * 110.79903 * 241.78562 * 22 20 19 35 35 H 1.09000 * 110.54647 * 118.87105 * 22 20 19 36 36 H 1.09007 * 110.60127 * 241.25549 * 23 22 20 37 37 H 1.08994 * 110.60740 * 118.29231 * 23 22 20 38 38 H 1.09001 * 109.88476 * 59.56780 * 26 9 7 39 39 H 1.08996 * 109.88911 * 298.39896 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4100 2.0970 -1.3964 5 1 1.4940 2.6258 0.7857 6 1 3.5887 1.4166 0.6107 7 6 2.0103 -1.2021 -0.0005 8 1 3.0789 -1.2085 -0.1562 9 7 1.3400 -2.3799 0.1964 10 6 -0.0653 -2.5076 0.6237 11 6 -0.1540 -3.9076 1.2810 12 6 0.7933 -4.7377 0.3750 13 1 0.2728 -5.0740 -0.5216 14 8 1.3359 -5.8500 1.0897 15 6 1.6808 -6.9614 0.2603 16 6 2.2392 -8.0708 1.1137 17 8 2.3330 -7.9241 2.3134 18 8 2.6329 -9.2187 0.5464 19 7 3.0760 -10.0780 1.2872 20 6 4.3765 -10.1721 1.5913 21 8 5.2490 -9.4371 1.1800 22 6 4.5846 -11.3389 2.5320 23 6 3.1653 -11.9150 2.7128 24 6 2.3038 -11.0096 1.8599 25 8 1.1038 -11.1120 1.7171 26 6 1.9021 -3.7262 0.0157 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3135 -1.7320 1.3481 29 1 -0.7306 -2.4482 -0.2376 30 1 -1.1722 -4.2946 1.2401 31 1 0.2112 -3.8810 2.3077 32 1 0.7911 -7.3163 -0.2601 33 1 2.4291 -6.6518 -0.4693 34 1 4.9853 -10.9993 3.4870 35 1 5.2449 -12.0802 2.0819 36 1 2.8602 -11.8620 3.7579 37 1 3.1191 -12.9418 2.3502 38 1 2.7572 -3.8629 0.6777 39 1 2.2078 -3.8643 -1.0214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224530124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -106.459775 kcal Electronic energy + Delta-G solvation = -25825.524839 eV Core-core repulsion = 21737.355187 eV Total energy + Delta-G solvation = -4088.169652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.36803 -41.38657 -40.15521 -40.05282 -39.15176 -37.52517 -36.96486 -34.28125 -32.88616 -31.27151 -29.90299 -28.72459 -27.52589 -26.39943 -25.16715 -24.24105 -22.22882 -21.96206 -21.63422 -19.77619 -19.66522 -18.93353 -18.46105 -18.15465 -17.46092 -17.20140 -16.96828 -16.75236 -16.19636 -16.10100 -15.62150 -15.48682 -15.23361 -15.21003 -14.61716 -14.35708 -14.23784 -13.88568 -13.68603 -13.65253 -13.39224 -12.92775 -12.74276 -12.66973 -12.54871 -12.25912 -12.18875 -12.10191 -12.03188 -11.84176 -11.50148 -11.11971 -11.11468 -10.79813 -10.71864 -8.92091 -7.92618 -5.27926 0.16826 0.21164 0.50910 1.27509 1.44469 1.46389 1.56124 1.78602 2.46030 2.78414 2.94728 3.05238 3.27810 3.44452 3.52894 3.66993 3.71420 3.94513 4.04135 4.07861 4.11493 4.12290 4.56777 4.66804 4.69715 4.80480 4.83403 4.86126 4.90435 4.92754 4.98100 5.13894 5.40075 5.53474 5.64775 5.80374 5.91499 6.03347 6.16130 7.03468 7.06788 7.69887 8.35505 9.19553 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.031165 B = 0.002556 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.231379 B =10952.927609 C =11539.919860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.625 5.625 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.094 3.906 13 H 0.108 0.892 14 O -0.379 6.379 15 C 0.071 3.929 16 C 0.424 3.576 17 O -0.500 6.500 18 O -0.070 6.070 19 N -0.423 5.423 20 C 0.499 3.501 21 O -0.502 6.502 22 C -0.127 4.127 23 C -0.126 4.126 24 C 0.501 3.499 25 O -0.500 6.500 26 C 0.110 3.890 27 H 0.251 0.749 28 H 0.038 0.962 29 H 0.014 0.986 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.022 0.978 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -30.066 3.638 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.352 5.352 10 C 0.054 3.946 11 C -0.165 4.165 12 C 0.037 3.963 13 H 0.126 0.874 14 O -0.298 6.298 15 C -0.007 4.007 16 C 0.265 3.735 17 O -0.383 6.383 18 O -0.088 6.088 19 N -0.200 5.200 20 C 0.293 3.707 21 O -0.373 6.373 22 C -0.166 4.166 23 C -0.165 4.165 24 C 0.295 3.705 25 O -0.371 6.371 26 C -0.016 4.016 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.040 0.960 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.418 -29.523 3.948 30.470 hybrid contribution 0.098 1.807 -0.467 1.869 sum 6.516 -27.716 3.481 28.684 Atomic orbital electron populations 1.70117 1.06306 1.25772 1.57225 1.25671 0.96600 1.01105 1.02065 0.85063 0.77689 0.78970 0.77564 1.20880 1.21651 1.19725 1.19374 0.91613 0.84084 1.42749 0.90586 1.44656 1.10269 1.00705 1.79585 1.21230 0.84990 0.92610 0.95754 1.22996 0.99480 0.95189 0.98864 1.23172 0.93225 0.84192 0.95718 0.87422 1.87977 1.83531 1.24104 1.34143 1.22062 1.03766 0.83874 0.91027 1.25807 0.74390 0.84023 0.89236 1.90806 1.50204 1.80162 1.17129 1.85379 1.73002 1.20742 1.29673 1.44593 1.10930 1.19742 1.44738 1.23009 0.79361 0.87743 0.80580 1.90834 1.45655 1.47209 1.53609 1.22688 0.99553 0.93801 1.00570 1.22692 0.90524 1.00785 1.02501 1.22970 0.88055 0.81022 0.78483 1.90821 1.14816 1.71317 1.60124 1.21895 0.95879 0.85686 0.98108 0.93994 0.94350 0.96759 0.88217 0.92079 0.84355 0.85818 0.82790 0.81161 0.82709 0.81077 0.96015 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.25 10.68 21.65 0.23 -57.02 16 2 C -0.06 -3.52 5.40 84.86 0.46 -3.06 16 3 Si 0.98 46.51 29.56 68.60 2.03 48.54 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.25 -14.48 10.24 84.03 0.86 -13.62 16 8 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 9 N -0.62 -33.39 3.39 -692.01 -2.35 -35.74 16 10 C 0.18 8.94 5.42 86.85 0.47 9.41 16 11 C -0.13 -4.90 6.82 31.99 0.22 -4.68 16 12 C 0.09 3.28 3.42 31.78 0.11 3.39 16 13 H 0.11 3.02 7.85 -2.39 -0.02 3.00 16 14 O -0.38 -12.82 9.61 -129.94 -1.25 -14.07 16 15 C 0.07 1.75 6.38 71.23 0.45 2.20 16 16 C 0.42 12.35 7.93 71.23 0.57 12.91 16 17 O -0.50 -18.06 16.56 27.15 0.45 -17.61 16 18 O -0.07 -1.76 9.82 103.61 1.02 -0.74 16 19 N -0.42 -8.92 2.04 -427.71 -0.87 -9.80 16 20 C 0.50 8.86 8.06 87.99 0.71 9.57 16 21 O -0.50 -13.47 17.90 13.27 0.24 -13.23 16 22 C -0.13 -0.26 7.03 30.46 0.21 -0.05 16 23 C -0.13 -0.21 7.03 30.46 0.21 0.01 16 24 C 0.50 8.48 8.05 87.99 0.71 9.19 16 25 O -0.50 -12.55 17.90 13.27 0.24 -12.32 16 26 C 0.11 4.74 7.02 86.73 0.61 5.35 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.04 2.16 6.93 -2.39 -0.02 2.14 16 29 H 0.01 0.75 8.07 -2.39 -0.02 0.74 16 30 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 31 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.14 2.38 8.11 -2.38 -0.02 2.37 16 33 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.17 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H 0.16 -0.31 8.14 -2.38 -0.02 -0.33 16 37 H 0.17 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.02 0.99 8.06 -2.39 -0.02 0.97 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -90.29 341.88 6.40 -83.90 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: 1.08 Total: -2.51 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: 5.59 Total: 30.60 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -2.99 Total: -102.55 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: 0.69 Total: -57.98 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -90.29 6.40 -83.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224530124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.563 kcal (2) G-P(sol) polarization free energy of solvation -90.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds