Wall clock time and date at job start Fri Apr 10 2020 18:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47325 * 40.67787 * 3 2 1 5 5 C 1.46904 * 124.37626 * 89.99856 * 4 3 2 6 6 C 1.54767 * 105.53242 * 163.24586 * 5 4 3 7 7 C 1.53360 * 101.43936 * 24.30892 * 6 5 4 8 8 C 1.53892 * 111.14645 * 97.86568 * 7 6 5 9 9 C 1.55140 * 101.45063 * 154.65796 * 8 7 6 10 10 N 1.47530 * 104.97438 * 324.26088 * 9 8 7 11 11 S 1.65608 * 125.67068 * 203.86106 * 10 9 8 12 12 O 1.42105 * 106.39740 * 23.58628 * 11 10 9 13 13 O 1.42099 * 106.39914 * 156.50041 * 11 10 9 14 14 C 1.76192 * 107.22132 * 270.04332 * 11 10 9 15 15 H 1.08004 * 119.99917 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00380 * 179.97438 * 14 11 10 17 17 N 1.31519 * 120.00660 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 119.99711 * 0.02562 * 16 14 11 19 19 H 1.48507 * 109.47235 * 89.99698 * 18 16 14 20 20 H 1.48505 * 109.47071 * 209.99483 * 18 16 14 21 21 H 1.48502 * 109.47141 * 329.99509 * 18 16 14 22 22 C 1.47334 * 108.66100 * 23.90023 * 10 9 8 23 23 C 1.34835 * 124.37584 * 270.02385 * 4 3 2 24 24 O 1.21281 * 125.18870 * 1.08877 * 23 4 3 25 25 H 4.40642 * 5.51418 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47381 * 280.67917 * 3 2 1 27 27 H 1.08994 * 109.47604 * 160.67706 * 3 2 1 28 28 H 1.08999 * 110.23365 * 44.23119 * 5 4 3 29 29 H 1.08993 * 110.30823 * 282.29757 * 5 4 3 30 30 H 1.08997 * 111.02990 * 142.35365 * 6 5 4 31 31 H 1.08999 * 111.03118 * 266.27330 * 6 5 4 32 32 H 1.09003 * 111.03189 * 272.69878 * 8 7 6 33 33 H 1.08994 * 111.03317 * 36.61112 * 8 7 6 34 34 H 1.09005 * 110.33962 * 205.38200 * 9 8 7 35 35 H 1.09001 * 110.42655 * 83.18576 * 9 8 7 36 36 H 0.96991 * 120.00443 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.97661 * 238.69531 * 22 10 9 38 38 H 1.09006 * 109.97357 * 117.42894 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0466 -0.9003 5 6 3.4112 -0.8493 -2.3295 6 6 4.2879 -2.0527 -2.7521 7 6 3.8989 -3.0971 -1.6987 8 6 2.8372 -4.0680 -2.2450 9 6 3.0889 -5.3239 -1.3698 10 7 4.5494 -5.3593 -1.1649 11 16 5.4420 -6.7077 -0.8072 12 8 4.6915 -7.8208 -1.2731 13 8 6.7703 -6.4336 -1.2313 14 6 5.4986 -6.8453 0.9484 15 1 4.9970 -6.1131 1.5639 16 6 6.1821 -7.8882 1.5365 17 7 6.2247 -7.9908 2.8470 18 14 7.0489 -9.1551 0.4720 19 1 8.4432 -8.7140 0.2138 20 1 7.0657 -10.4635 1.1741 21 1 6.3269 -9.2948 -0.8182 22 6 5.0819 -3.9956 -1.3303 23 6 3.3887 -2.3163 -0.5242 24 8 3.2296 -2.7593 0.5935 25 1 -1.0499 -0.0001 -0.0003 26 1 3.0094 -0.1896 1.0099 27 1 3.0089 0.9705 -0.3400 28 1 3.9527 0.0841 -2.4834 29 1 2.4809 -0.8428 -2.8974 30 1 4.0284 -2.3927 -3.7547 31 1 5.3477 -1.8067 -2.6864 32 1 1.8319 -3.6769 -2.0881 33 1 3.0106 -4.2845 -3.2991 34 1 2.7575 -6.2219 -1.8915 35 1 2.5742 -5.2306 -0.4135 36 1 6.7059 -8.7243 3.2607 37 1 5.8240 -3.9798 -2.1285 38 1 5.5311 -3.6555 -0.3972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275490758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:03 Heat of formation + Delta-G solvation = -38.480064 kcal Electronic energy + Delta-G solvation = -24520.060224 eV Core-core repulsion = 20877.591265 eV Total energy + Delta-G solvation = -3642.468960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.14703 -37.43627 -36.49246 -35.60764 -34.39649 -34.15757 -32.94091 -31.74442 -29.54579 -28.34515 -27.27477 -26.30054 -23.90020 -22.12626 -21.62043 -19.25498 -18.72013 -18.43449 -17.53762 -16.81023 -16.51267 -16.09764 -15.91457 -15.08119 -14.98907 -14.36255 -14.21281 -13.94956 -13.65169 -13.29882 -13.18094 -13.09513 -13.01840 -12.74789 -12.51494 -12.33868 -12.18403 -11.44627 -11.40367 -11.17492 -11.00442 -10.83733 -10.75802 -10.70019 -10.58320 -10.42432 -10.41589 -9.79124 -9.55842 -9.13908 -9.07054 -9.02516 -8.16841 -6.71401 -5.23953 2.01626 2.18889 2.55128 2.61002 3.11167 3.21911 3.24369 3.30473 4.00631 4.11541 4.14727 4.16537 4.35184 4.40534 4.66982 4.80606 4.86471 5.02104 5.03940 5.21323 5.31425 5.39322 5.44956 5.58078 5.61900 5.67396 5.72685 5.80746 5.95191 5.97191 6.06441 6.19330 6.34389 6.37161 6.70812 6.92414 7.23772 7.36804 7.58029 8.15798 8.37140 8.79668 10.41513 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.004250 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.679660 B = 6586.537701 C = 7039.090423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.208 4.208 3 C 0.236 3.764 4 N -0.626 5.626 5 C 0.106 3.894 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.104 4.104 9 C 0.121 3.879 10 N -1.008 6.008 11 S 2.692 3.308 12 O -1.004 7.004 13 O -1.007 7.007 14 C -1.014 5.014 15 H 0.123 0.877 16 C 0.152 3.848 17 N -0.823 5.823 18 Si 0.800 3.200 19 H -0.246 1.246 20 H -0.255 1.255 21 H -0.220 1.220 22 C 0.152 3.848 23 C 0.534 3.466 24 O -0.496 6.496 25 H 0.217 0.783 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.280 0.720 37 H 0.078 0.922 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 17.487 -11.628 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.209 4.209 3 C 0.114 3.886 4 N -0.361 5.361 5 C -0.017 4.017 6 C -0.158 4.158 7 C -0.113 4.113 8 C -0.143 4.143 9 C -0.005 4.005 10 N -0.844 5.844 11 S 2.796 3.204 12 O -0.994 6.994 13 O -0.998 6.998 14 C -1.149 5.149 15 H 0.141 0.859 16 C -0.067 4.067 17 N -0.453 5.453 18 Si 0.620 3.380 19 H -0.170 1.170 20 H -0.179 1.179 21 H -0.142 1.142 22 C 0.025 3.975 23 C 0.321 3.679 24 O -0.368 6.368 25 H 0.234 0.766 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.445 16.561 -11.424 21.452 hybrid contribution -0.068 -0.238 0.567 0.619 sum -7.514 16.322 -10.857 20.994 Atomic orbital electron populations 1.24974 0.95975 0.99519 0.99971 1.23657 0.95090 1.01159 1.00997 1.18152 0.83457 0.91227 0.95715 1.48422 1.66758 1.10643 1.10306 1.22154 0.99544 0.99448 0.80535 1.22594 1.00984 0.93275 0.98947 1.21570 0.98612 0.96059 0.95057 1.22593 0.97351 0.94176 1.00209 1.21946 0.81335 0.97859 0.99332 1.58635 1.16429 1.21299 1.88051 1.00937 0.71914 0.70247 0.77300 1.93452 1.72799 1.49208 1.83966 1.93394 1.37063 1.84321 1.84978 1.30565 1.46404 1.21708 1.16204 0.85864 1.24445 0.91743 0.95438 0.95034 1.70006 1.35745 1.30106 1.09415 0.87894 0.83452 0.82831 0.83788 1.17012 1.17863 1.14216 1.21256 0.93423 0.81179 1.01649 1.20337 0.76752 0.81719 0.89125 1.90802 1.51260 1.72569 1.22212 0.76591 0.87569 0.87967 0.90129 0.91176 0.88475 0.89069 0.90273 0.89298 0.89892 0.91334 0.91002 0.90428 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.21 -2.24 13.68 -37.12 -0.51 -2.75 16 3 C 0.24 2.25 6.42 -6.83 -0.04 2.21 16 4 N -0.63 -6.83 2.91 -175.89 -0.51 -7.34 16 5 C 0.11 0.76 7.37 -2.89 -0.02 0.74 16 6 C -0.12 -0.98 6.15 -25.61 -0.16 -1.14 16 7 C -0.11 -1.42 0.66 -155.34 -0.10 -1.53 16 8 C -0.10 -1.31 6.03 -25.13 -0.15 -1.46 16 9 C 0.12 2.13 7.05 -2.35 -0.02 2.11 16 10 N -1.01 -21.01 3.71 -111.70 -0.41 -21.42 16 11 S 2.69 70.57 4.44 -107.50 -0.48 70.10 16 12 O -1.00 -27.67 15.35 -57.17 -0.88 -28.55 16 13 O -1.01 -27.50 16.42 -57.17 -0.94 -28.44 16 14 C -1.01 -30.18 10.29 30.60 0.31 -29.86 16 15 H 0.12 3.83 8.06 -52.48 -0.42 3.41 16 16 C 0.15 4.59 5.47 -17.82 -0.10 4.49 16 17 N -0.82 -24.91 13.96 55.43 0.77 -24.14 16 18 Si 0.80 21.20 26.54 -169.99 -4.51 16.69 16 19 H -0.25 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.22 -5.89 5.61 56.52 0.32 -5.57 16 22 C 0.15 2.61 6.09 -3.56 -0.02 2.59 16 23 C 0.53 8.02 6.59 -11.31 -0.07 7.95 16 24 O -0.50 -9.88 17.47 5.56 0.10 -9.79 16 25 H 0.22 1.34 7.80 -54.10 -0.42 0.92 16 26 H 0.11 1.11 7.96 -51.93 -0.41 0.70 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.59 7.62 -51.93 -0.40 0.20 16 31 H 0.09 0.67 7.90 -51.93 -0.41 0.26 16 32 H 0.08 0.89 8.00 -51.93 -0.42 0.47 16 33 H 0.09 0.91 7.76 -51.93 -0.40 0.50 16 34 H 0.08 1.40 7.79 -51.93 -0.40 1.00 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.08 1.18 7.79 -51.93 -0.40 0.78 16 38 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -38.38 335.01 -7.13 -45.51 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.01 Total: 0.21 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.31 Total: -17.88 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.15 Total: -52.90 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -1.72 Total: -66.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.51 Total: 16.69 kcal Atomic # 16 Polarization: 70.57 SS G_CDS: -0.48 Total: 70.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -38.38 -7.13 -45.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275490758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.028 kcal (2) G-P(sol) polarization free energy of solvation -38.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds