Wall clock time and date at job start Fri Apr 10 2020 18:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47261 * 284.08579 * 3 2 1 5 5 C 1.46927 * 124.37588 * 90.00095 * 4 3 2 6 6 C 1.54802 * 105.53932 * 163.20771 * 5 4 3 7 7 C 1.53208 * 101.38879 * 24.16970 * 6 5 4 8 8 C 1.53707 * 111.54299 * 214.17623 * 7 6 5 9 9 C 1.54591 * 102.78295 * 206.03656 * 8 7 6 10 10 N 1.47142 * 107.32776 * 20.87720 * 9 8 7 11 11 S 1.65600 * 125.60449 * 180.91583 * 10 9 8 12 12 O 1.42100 * 106.40556 * 336.48876 * 11 10 9 13 13 O 1.42099 * 106.39902 * 203.56870 * 11 10 9 14 14 C 1.76199 * 107.21661 * 90.02941 * 11 10 9 15 15 H 1.07997 * 119.99999 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99854 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00069 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99806 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46845 * 90.00621 * 18 16 14 20 20 H 1.48503 * 109.47399 * 210.00111 * 18 16 14 21 21 H 1.48498 * 109.47295 * 330.00717 * 18 16 14 22 22 C 1.47700 * 108.78493 * 1.18661 * 10 9 8 23 23 C 1.34891 * 124.37838 * 269.95148 * 4 3 2 24 24 O 1.21280 * 125.22232 * 1.26742 * 23 4 3 25 25 H 4.40641 * 5.51401 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47173 * 164.08589 * 3 2 1 27 27 H 1.09000 * 109.47393 * 44.08473 * 3 2 1 28 28 H 1.08998 * 110.23460 * 44.19418 * 5 4 3 29 29 H 1.08994 * 110.23318 * 282.22469 * 5 4 3 30 30 H 1.09001 * 111.04145 * 266.14404 * 6 5 4 31 31 H 1.08998 * 111.07083 * 142.21505 * 6 5 4 32 32 H 1.08995 * 110.75083 * 87.71445 * 8 7 6 33 33 H 1.09003 * 110.90874 * 324.42869 * 8 7 6 34 34 H 1.09000 * 109.86925 * 261.45180 * 9 8 7 35 35 H 1.08991 * 109.87416 * 140.31888 * 9 8 7 36 36 H 0.97000 * 119.99838 * 359.97438 * 17 16 14 37 37 H 1.08995 * 110.39373 * 95.95492 * 22 10 9 38 38 H 1.09000 * 110.38980 * 218.34355 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3353 1.3397 5 6 3.4116 -1.7017 1.8032 6 6 4.2887 -1.5405 3.0685 7 6 3.9015 -0.1310 3.5275 8 6 5.0932 0.6030 4.1629 9 6 4.4069 1.6112 5.1128 10 7 3.0490 1.1099 5.3771 11 16 1.9135 1.8552 6.3244 12 8 2.6278 2.6918 7.2239 13 8 1.0186 0.8382 6.7532 14 6 0.9846 2.9271 5.2791 15 1 1.2187 2.9916 4.2268 16 6 -0.0413 3.6837 5.8047 17 7 -0.3261 3.6056 7.0863 18 14 -1.0257 4.8206 4.6967 19 1 -2.1879 4.0836 4.1386 20 1 -1.5088 5.9833 5.4842 21 1 -0.1632 5.2987 3.5864 22 6 2.8676 -0.1707 4.6638 23 6 3.3889 0.5700 2.3068 24 8 3.2277 1.7676 2.2039 25 1 -1.0500 0.0002 0.0001 26 1 3.0088 0.9891 -0.2818 27 1 3.0097 -0.7373 -0.7150 28 1 3.9532 -2.2569 1.0374 29 1 2.4809 -2.2114 2.0520 30 1 5.3485 -1.5936 2.8195 31 1 4.0285 -2.2831 3.8229 32 1 5.6759 1.1235 3.4029 33 1 5.7223 -0.0888 4.7232 34 1 4.3542 2.5908 4.6378 35 1 4.9650 1.6795 6.0465 36 1 0.1853 3.0155 7.6617 37 1 3.0658 -1.0089 5.3318 38 1 1.8589 -0.2389 4.2564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275490761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:08 Heat of formation + Delta-G solvation = -55.402488 kcal Electronic energy + Delta-G solvation = -24948.129567 eV Core-core repulsion = 21304.926796 eV Total energy + Delta-G solvation = -3643.202771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08687 -37.40494 -36.42032 -35.49900 -34.34652 -34.05743 -33.09760 -31.66815 -29.62198 -28.16480 -27.19055 -25.42779 -24.03986 -21.91337 -21.60446 -19.21745 -19.21120 -18.34724 -17.82822 -16.66922 -16.37855 -16.15680 -15.44873 -15.15111 -14.54320 -14.20597 -14.09951 -13.96710 -13.83778 -13.53965 -13.17879 -13.15949 -12.77608 -12.72378 -12.51412 -12.22818 -11.89115 -11.32078 -11.02368 -10.98594 -10.93469 -10.85230 -10.65971 -10.56831 -10.50802 -10.45614 -10.26457 -10.23152 -9.50209 -9.09852 -8.94631 -8.73461 -8.05605 -7.09392 -5.27835 2.08609 2.30889 2.63401 2.78019 3.28255 3.32511 3.36390 3.53260 4.10763 4.22486 4.24266 4.31416 4.34519 4.54649 4.76629 4.82737 4.92613 5.06340 5.09805 5.25361 5.35866 5.38647 5.53415 5.60371 5.64482 5.69166 5.81812 5.88213 5.88239 5.94525 6.04868 6.22336 6.37838 6.42085 6.71759 6.99523 7.29328 7.55253 7.76837 8.19658 8.24898 8.71276 10.28121 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.006380 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.990309 B = 4387.576165 C = 5732.309081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.218 4.218 3 C 0.240 3.760 4 N -0.627 5.627 5 C 0.104 3.896 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.102 4.102 9 C 0.127 3.873 10 N -1.012 6.012 11 S 2.704 3.296 12 O -1.007 7.007 13 O -1.010 7.010 14 C -1.079 5.079 15 H 0.106 0.894 16 C 0.091 3.909 17 N -0.849 5.849 18 Si 1.081 2.919 19 H -0.275 1.275 20 H -0.273 1.273 21 H -0.277 1.277 22 C 0.155 3.845 23 C 0.536 3.464 24 O -0.494 6.494 25 H 0.218 0.782 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.274 0.726 37 H 0.075 0.925 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 -12.751 -14.323 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.219 4.219 3 C 0.119 3.881 4 N -0.362 5.362 5 C -0.019 4.019 6 C -0.156 4.156 7 C -0.116 4.116 8 C -0.141 4.141 9 C 0.001 3.999 10 N -0.848 5.848 11 S 2.808 3.192 12 O -0.997 6.997 13 O -1.000 7.000 14 C -1.214 5.214 15 H 0.125 0.875 16 C -0.127 4.127 17 N -0.479 5.479 18 Si 0.904 3.096 19 H -0.201 1.201 20 H -0.197 1.197 21 H -0.202 1.202 22 C 0.028 3.972 23 C 0.322 3.678 24 O -0.366 6.366 25 H 0.235 0.765 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.501 -11.131 -13.410 19.391 hybrid contribution 0.773 -0.948 -0.710 1.414 sum 9.274 -12.079 -14.120 20.767 Atomic orbital electron populations 1.25039 0.96063 1.00347 0.97897 1.23574 0.95086 1.01048 1.02200 1.18099 0.83624 1.03019 0.83367 1.48443 1.66811 1.08091 1.12898 1.22180 0.99739 0.83269 0.96726 1.22499 1.00569 0.95456 0.97113 1.21645 0.98681 0.96377 0.94921 1.22384 0.95358 0.97876 0.98449 1.21587 0.82506 0.97609 0.98194 1.58883 1.26042 1.32270 1.67560 1.00667 0.71806 0.73488 0.73229 1.93408 1.74396 1.68128 1.63787 1.93407 1.63736 1.61141 1.81709 1.31542 1.33327 1.44102 1.12394 0.87526 1.25960 0.94065 0.95646 0.97015 1.70840 1.38738 1.33805 1.04512 0.83458 0.75645 0.75762 0.74756 1.20111 1.19742 1.20173 1.21501 0.97909 0.87298 0.90507 1.20200 0.76872 0.86387 0.84294 1.90779 1.51129 1.13602 1.81075 0.76519 0.87817 0.88160 0.90163 0.90993 0.89265 0.88488 0.90101 0.89702 0.91194 0.91615 0.91377 0.90688 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 19.25 29.55 0.57 -1.66 16 2 C -0.22 -2.87 13.68 -37.12 -0.51 -3.38 16 3 C 0.24 2.60 6.42 -6.83 -0.04 2.55 16 4 N -0.63 -7.62 2.91 -175.90 -0.51 -8.13 16 5 C 0.10 0.86 7.37 -2.86 -0.02 0.84 16 6 C -0.12 -0.97 6.27 -25.67 -0.16 -1.13 16 7 C -0.11 -1.51 0.67 -155.26 -0.10 -1.61 16 8 C -0.10 -1.31 5.79 -25.53 -0.15 -1.46 16 9 C 0.13 2.30 6.74 -2.86 -0.02 2.28 16 10 N -1.01 -21.96 3.71 -111.69 -0.41 -22.38 16 11 S 2.70 75.68 4.58 -107.50 -0.49 75.19 16 12 O -1.01 -30.31 17.22 -57.17 -0.98 -31.30 16 13 O -1.01 -30.03 17.22 -57.17 -0.98 -31.01 16 14 C -1.08 -32.46 9.75 30.60 0.30 -32.16 16 15 H 0.11 3.16 7.81 -52.49 -0.41 2.75 16 16 C 0.09 2.76 5.46 -17.82 -0.10 2.66 16 17 N -0.85 -27.19 13.66 55.43 0.76 -26.43 16 18 Si 1.08 26.03 29.90 -169.99 -5.08 20.95 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.15 2.69 5.98 -3.03 -0.02 2.67 16 23 C 0.54 8.61 6.79 -11.37 -0.08 8.53 16 24 O -0.49 -10.25 17.27 5.56 0.10 -10.15 16 25 H 0.22 2.09 7.80 -54.09 -0.42 1.67 16 26 H 0.10 1.17 7.96 -51.93 -0.41 0.75 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.54 7.96 -51.93 -0.41 0.13 16 31 H 0.10 0.65 7.63 -51.93 -0.40 0.25 16 32 H 0.08 0.96 8.00 -51.93 -0.42 0.54 16 33 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.27 8.99 6.52 -40.82 -0.27 8.72 16 37 H 0.08 1.10 7.75 -51.93 -0.40 0.70 16 38 H 0.07 1.39 8.02 -51.93 -0.42 0.97 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -40.96 340.19 -7.71 -48.66 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.88 Total: 1.34 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -0.33 Total: -21.86 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.17 Total: -56.94 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -1.87 Total: -72.46 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.95 kcal Atomic # 16 Polarization: 75.68 SS G_CDS: -0.49 Total: 75.19 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -40.96 -7.71 -48.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275490761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.740 kcal (2) G-P(sol) polarization free energy of solvation -40.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds