Wall clock time and date at job start Fri Apr 10 2020 18:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46682 * 2 1 4 4 C 1.53006 * 110.53206 * 177.87405 * 3 2 1 5 5 C 1.52998 * 109.47257 * 187.12882 * 4 3 2 6 6 N 1.47308 * 110.60223 * 54.87993 * 3 2 1 7 7 C 1.34526 * 106.61861 * 241.47074 * 6 3 2 8 8 O 1.21537 * 123.77256 * 180.02562 * 7 6 3 9 9 N 1.33796 * 112.45867 * 359.74688 * 7 6 3 10 10 C 1.46497 * 124.18317 * 180.30692 * 9 7 6 11 11 C 1.50703 * 109.47116 * 270.14804 * 10 9 7 12 12 O 1.20819 * 119.99946 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99918 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99877 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47147 * 179.97438 * 14 13 11 16 16 C 1.50704 * 109.47472 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99471 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00250 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00059 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00009 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47106 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47338 * 119.99853 * 20 18 16 23 23 H 1.48504 * 109.47359 * 240.00308 * 20 18 16 24 24 C 1.34772 * 111.64406 * 0.43741 * 9 7 6 25 25 O 1.21233 * 127.16267 * 179.85831 * 24 9 7 26 26 H 1.09000 * 109.46729 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46760 * 299.99877 * 1 2 3 28 28 H 1.08997 * 109.47230 * 60.00028 * 1 2 3 29 29 H 1.08999 * 109.47218 * 240.00397 * 2 1 3 30 30 H 1.08997 * 109.47230 * 119.99972 * 2 1 3 31 31 H 1.09002 * 109.46791 * 307.12940 * 4 3 2 32 32 H 1.09004 * 109.47236 * 67.12590 * 4 3 2 33 33 H 1.09002 * 109.46829 * 300.00073 * 5 4 3 34 34 H 1.09004 * 109.47237 * 59.99708 * 5 4 3 35 35 H 1.08993 * 109.47205 * 180.02562 * 5 4 3 36 36 H 0.96997 * 126.68895 * 61.48500 * 6 3 2 37 37 H 1.09006 * 109.47083 * 30.14451 * 10 9 7 38 38 H 1.08992 * 109.47514 * 150.14641 * 10 9 7 39 39 H 1.08997 * 109.46978 * 300.00352 * 14 13 11 40 40 H 1.09005 * 109.47024 * 59.99886 * 14 13 11 41 41 H 1.09004 * 109.47319 * 299.99879 * 15 14 13 42 42 H 1.09005 * 109.47094 * 60.00121 * 15 14 13 43 43 H 0.96998 * 119.99911 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5688 1.4714 0.0532 5 6 4.0459 2.9141 0.2311 6 7 1.4648 2.1957 1.1278 7 6 0.7507 3.2029 0.5937 8 8 0.1409 4.0222 1.2524 9 7 0.7918 3.2054 -0.7436 10 6 0.1109 4.1916 -1.5861 11 6 -1.2778 3.7033 -1.9090 12 8 -1.6593 2.6402 -1.4799 13 8 -2.0908 4.4493 -2.6734 14 6 -3.4140 3.9161 -2.9440 15 6 -4.1897 4.8987 -3.8235 16 6 -5.5633 4.3457 -4.1038 17 1 -5.8540 3.3891 -3.6951 18 6 -6.4491 5.0612 -4.8811 19 7 -6.0953 6.2262 -5.3783 20 14 -8.1514 4.3754 -5.2291 21 1 -8.3002 3.0575 -4.5611 22 1 -9.1787 5.3131 -4.7093 23 1 -8.3284 4.2098 -6.6943 24 6 1.5347 2.1868 -1.2201 25 8 1.7570 1.9237 -2.3825 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9145 0.8681 0.8926 32 1 3.9723 1.0671 -0.8752 33 1 3.7001 3.5173 -0.6084 34 1 3.6424 3.3184 1.1595 35 1 5.1350 2.9346 0.2685 36 1 1.5789 2.0030 2.0716 37 1 0.0476 5.1414 -1.0550 38 1 0.6717 4.3290 -2.5105 39 1 -3.3220 2.9604 -3.4600 40 1 -3.9467 3.7717 -2.0040 41 1 -4.2816 5.8542 -3.3070 42 1 -3.6571 5.0435 -4.7635 43 1 -6.7184 6.7295 -5.9254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042367173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:05 Heat of formation + Delta-G solvation = -164.156296 kcal Electronic energy + Delta-G solvation = -26889.898986 eV Core-core repulsion = 22935.060520 eV Total energy + Delta-G solvation = -3954.838466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.94375 -41.49594 -39.88314 -38.30168 -37.81856 -36.56354 -35.49723 -33.54059 -33.30661 -32.47277 -30.32152 -27.95359 -27.05660 -24.98312 -23.96194 -23.10634 -22.86310 -21.95972 -21.30622 -19.40184 -19.14044 -18.50034 -18.00026 -17.80598 -17.47319 -17.13242 -16.90579 -16.56582 -16.39682 -15.71880 -15.36846 -15.29924 -15.03675 -14.76880 -14.57344 -14.43174 -14.39323 -13.82495 -13.71378 -13.13456 -13.09539 -12.76064 -12.67866 -12.65152 -12.63178 -12.50794 -12.19384 -12.13105 -11.93493 -11.86567 -11.74704 -11.57082 -11.48304 -11.26542 -11.07319 -10.64639 -10.49641 -8.29892 -6.43367 0.46485 0.78019 0.96139 1.38928 1.39886 1.50642 1.55460 1.99870 2.08135 2.38067 2.76708 3.04505 3.29333 3.49194 3.65018 3.70805 4.01754 4.10953 4.14758 4.18340 4.20029 4.25624 4.27844 4.38106 4.47319 4.62487 4.68853 4.76157 4.94281 5.00298 5.03993 5.09505 5.15895 5.26818 5.30337 5.42166 5.44626 5.69582 5.74012 5.85182 6.02603 6.21009 6.51664 6.69969 6.99442 7.26474 8.83005 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.002791 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.652323 B =10030.310376 C =10267.783859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C 0.131 3.869 4 C -0.110 4.110 5 C -0.161 4.161 6 N -0.691 5.691 7 C 0.707 3.293 8 O -0.577 6.577 9 N -0.570 5.570 10 C 0.127 3.873 11 C 0.439 3.561 12 O -0.531 6.531 13 O -0.357 6.357 14 C 0.093 3.907 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.530 3.470 25 O -0.487 6.487 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.454 0.546 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.587 -11.765 14.465 30.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.148 4.148 3 C 0.041 3.959 4 C -0.148 4.148 5 C -0.218 4.218 6 N -0.356 5.356 7 C 0.407 3.593 8 O -0.454 6.454 9 N -0.316 5.316 10 C 0.004 3.996 11 C 0.282 3.718 12 O -0.420 6.420 13 O -0.273 6.273 14 C 0.020 3.980 15 C -0.006 4.006 16 C -0.589 4.589 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.199 1.199 24 C 0.319 3.681 25 O -0.357 6.357 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.114 0.886 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.302 0.698 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 24.145 -11.593 14.117 30.276 hybrid contribution -1.495 0.075 -0.194 1.509 sum 22.651 -11.517 13.922 28.975 Atomic orbital electron populations 1.21832 0.96485 1.02685 1.00856 1.21850 0.95132 0.91112 1.06688 1.21838 0.98096 0.93969 0.82018 1.21853 0.87182 0.99344 1.06423 1.21857 1.02998 0.95569 1.01382 1.45433 1.51919 1.28345 1.09949 1.15879 0.79643 0.82672 0.81061 1.91015 1.47942 1.42836 1.63562 1.46115 1.47394 1.29892 1.08208 1.21221 0.86233 0.92855 0.99297 1.24535 0.89246 0.82868 0.75159 1.90621 1.76584 1.23908 1.50901 1.86490 1.27461 1.50001 1.63328 1.23196 0.77491 0.97911 0.99430 1.18991 0.93683 0.94090 0.93832 1.21381 0.98748 1.05937 1.32841 0.91870 1.25963 1.03352 0.95003 0.94917 1.70096 1.37745 1.14116 1.34506 0.85262 0.78050 0.78673 0.78232 1.18747 1.19941 1.19893 1.21499 0.76211 0.79284 0.91090 1.90791 1.57827 1.67797 1.19270 0.90569 0.93036 0.95822 0.88607 0.85518 0.85826 0.88704 0.94960 0.92053 0.89816 0.69816 0.82384 0.82019 0.92236 0.92408 0.97344 0.97238 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.38 71.98 0.68 -2.48 16 2 C -0.11 -1.24 5.35 30.60 0.16 -1.07 16 3 C 0.13 1.76 0.86 2.99 0.00 1.76 16 4 C -0.11 -0.76 5.34 30.60 0.16 -0.60 16 5 C -0.16 -1.47 9.37 71.98 0.67 -0.79 16 6 N -0.69 -9.98 3.96 -439.80 -1.74 -11.72 16 7 C 0.71 17.24 8.41 179.44 1.51 18.75 16 8 O -0.58 -18.45 17.48 -3.83 -0.07 -18.51 16 9 N -0.57 -14.20 2.09 -777.20 -1.63 -15.82 16 10 C 0.13 3.29 6.29 85.63 0.54 3.83 16 11 C 0.44 15.99 8.03 71.24 0.57 16.56 16 12 O -0.53 -21.83 15.51 21.98 0.34 -21.49 16 13 O -0.36 -14.78 10.22 -51.43 -0.53 -15.31 16 14 C 0.09 4.35 5.40 71.98 0.39 4.74 16 15 C 0.03 1.72 5.35 29.85 0.16 1.88 16 16 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 17 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 18 C 0.01 0.39 5.46 84.65 0.46 0.85 16 19 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 20 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 C 0.53 12.08 4.79 87.94 0.42 12.50 16 25 O -0.49 -13.56 17.76 -2.88 -0.05 -13.61 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.07 7.53 -2.39 -0.02 1.05 16 28 H 0.02 0.65 6.58 -2.39 -0.02 0.64 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.03 0.43 7.42 -2.39 -0.02 0.41 16 34 H 0.06 0.58 7.43 -2.38 -0.02 0.56 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.45 3.76 8.96 -92.71 -0.83 2.93 16 37 H 0.16 3.49 7.86 -2.38 -0.02 3.47 16 38 H 0.16 3.34 8.00 -2.39 -0.02 3.32 16 39 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 40 H 0.06 2.70 8.13 -2.38 -0.02 2.69 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -79.41 365.54 4.80 -74.61 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.20 Total: 7.04 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 5.96 Total: 24.23 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.08 Total: -83.28 kcal Atomic # 8 Polarization: -68.63 SS G_CDS: -0.30 Total: -68.93 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -79.41 4.80 -74.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042367173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.549 kcal (2) G-P(sol) polarization free energy of solvation -79.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds