Wall clock time and date at job start Fri Apr 10 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47380 * 270.00264 * 3 2 1 5 5 H 1.48506 * 109.46972 * 30.00489 * 3 2 1 6 6 H 1.48501 * 109.47000 * 149.99822 * 3 2 1 7 7 C 1.38799 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00209 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 15 15 C 1.53191 * 108.77343 * 126.37163 * 14 13 11 16 16 C 1.53039 * 109.31416 * 54.63452 * 15 14 13 17 17 C 1.53070 * 109.65812 * 298.69913 * 16 15 14 18 18 H 1.08997 * 109.38860 * 301.27396 * 17 16 15 19 19 C 1.50703 * 109.62238 * 181.16791 * 17 16 15 20 20 O 1.21283 * 119.99864 * 0.10588 * 19 17 16 21 21 N 1.34772 * 119.99998 * 180.10868 * 19 17 16 22 22 C 1.46498 * 119.99978 * 179.97438 * 21 19 17 23 23 C 1.52993 * 117.50147 * 223.61784 * 22 21 19 24 24 C 1.52992 * 60.00275 * 252.51117 * 23 22 21 25 25 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 26 26 H 0.97005 * 120.00303 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47163 * 59.99853 * 10 9 7 28 28 H 1.08997 * 109.47104 * 300.00354 * 10 9 7 29 29 H 1.08998 * 109.58787 * 246.16207 * 14 13 11 30 30 H 1.08999 * 109.58470 * 6.58560 * 14 13 11 31 31 H 1.09002 * 109.49529 * 174.58688 * 15 14 13 32 32 H 1.09001 * 109.49774 * 294.68244 * 15 14 13 33 33 H 1.09007 * 109.45640 * 58.65727 * 16 15 14 34 34 H 1.09000 * 109.45893 * 178.62518 * 16 15 14 35 35 H 0.97001 * 119.99863 * 0.02562 * 21 19 17 36 36 H 1.08998 * 115.55125 * 9.33235 * 22 21 19 37 37 H 1.09006 * 117.49756 * 0.02562 * 23 22 21 38 38 H 1.09000 * 117.50390 * 145.01825 * 23 22 21 39 39 H 1.09004 * 117.49998 * 252.50917 * 24 23 22 40 40 H 1.09001 * 117.51999 * 107.47864 * 24 23 22 41 41 H 1.09002 * 109.58751 * 353.41659 * 25 13 11 42 42 H 1.08996 * 109.58750 * 113.69843 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2325 -0.0008 12 8 6.3439 -2.2964 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 5.1242 -5.6391 -0.0022 15 6 5.4855 -6.5621 -1.1702 16 6 6.9639 -6.9456 -1.0737 17 6 7.8297 -5.6867 -1.1671 18 1 7.6288 -5.1786 -2.1103 19 6 9.2861 -6.0680 -1.1007 20 8 9.6035 -7.2335 -0.9914 21 7 10.2360 -5.1140 -1.1628 22 6 11.6518 -5.4846 -1.0977 23 6 12.5646 -4.6348 -0.2115 24 6 12.6624 -4.5286 -1.7346 25 6 7.4921 -4.7524 -0.0016 26 1 -0.4851 0.8401 0.0004 27 1 3.6432 -3.4318 -0.8906 28 1 3.6439 -3.4314 0.8893 29 1 5.2177 -6.1845 0.9369 30 1 4.1005 -5.2839 -0.1203 31 1 4.8725 -7.4622 -1.1257 32 1 5.3048 -6.0444 -2.1123 33 1 7.1489 -7.4413 -0.1206 34 1 7.2177 -7.6219 -1.8899 35 1 9.9822 -4.1818 -1.2499 36 1 11.8616 -6.5525 -1.1591 37 1 12.1115 -3.8001 0.3235 38 1 13.3749 -5.1435 0.3107 39 1 13.5371 -4.9674 -2.2146 40 1 12.2738 -3.6240 -2.2024 41 1 8.0307 -3.8122 -0.1194 42 1 7.7797 -5.2230 0.9385 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050427317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:16 Heat of formation + Delta-G solvation = -53.477732 kcal Electronic energy + Delta-G solvation = -23412.030927 eV Core-core repulsion = 19904.744714 eV Total energy + Delta-G solvation = -3507.286213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.74909 -39.56743 -37.68270 -36.84864 -33.51435 -32.92266 -32.46724 -31.49181 -29.31215 -25.70226 -25.38204 -24.55116 -22.79955 -22.57420 -21.36625 -20.47840 -19.23422 -17.91228 -17.32475 -17.02515 -16.64623 -16.12027 -15.46411 -15.11626 -14.98674 -14.93705 -14.53174 -14.27063 -14.00283 -13.79770 -13.41094 -13.30035 -13.02795 -12.81258 -12.79122 -12.11963 -12.01260 -11.86033 -11.65077 -11.34468 -11.21454 -11.17554 -11.03729 -10.96139 -10.86311 -10.62730 -10.16755 -9.88622 -9.55045 -9.13604 -9.03522 -8.71623 -8.53298 -6.95960 -6.31779 -4.04016 2.19331 2.60045 2.73426 2.84246 3.13483 3.30381 3.47440 3.51050 3.54536 4.27654 4.29664 4.32219 4.36707 4.51123 4.57048 4.59005 4.62824 4.75611 4.88143 4.97107 5.03907 5.07320 5.22319 5.24053 5.36487 5.39508 5.51617 5.52374 5.56838 5.63713 5.66315 5.70170 5.74322 5.85510 5.94821 6.05629 6.13870 6.40833 7.10006 7.35106 7.85985 7.91175 8.32765 8.38695 9.14286 10.77408 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002955 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.245515 B = 9474.116566 C =10651.858232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.535 3.465 12 O -0.519 6.519 13 N -0.616 5.616 14 C 0.104 3.896 15 C -0.136 4.136 16 C -0.098 4.098 17 C -0.123 4.123 18 H 0.104 0.896 19 C 0.529 3.471 20 O -0.536 6.536 21 N -0.703 5.703 22 C 0.078 3.922 23 C -0.193 4.193 24 C -0.190 4.190 25 C 0.125 3.875 26 H 0.271 0.729 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.890 -13.829 -2.409 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.324 3.676 12 O -0.394 6.394 13 N -0.352 5.352 14 C -0.019 4.019 15 C -0.174 4.174 16 C -0.136 4.136 17 C -0.145 4.145 18 H 0.122 0.878 19 C 0.315 3.685 20 O -0.412 6.412 21 N -0.354 5.354 22 C -0.028 4.028 23 C -0.232 4.232 24 C -0.228 4.228 25 C 0.001 3.999 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.241 0.759 36 H 0.155 0.845 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.050 -13.176 -2.321 24.942 hybrid contribution -0.893 0.173 -0.119 0.918 sum 20.157 -13.003 -2.440 24.111 Atomic orbital electron populations 1.69935 1.05910 1.27794 1.47977 1.24713 0.94452 0.98969 0.93178 0.86736 0.81894 0.83302 0.79918 1.19217 1.19937 1.15932 1.22296 0.88155 0.97537 1.58865 0.89359 1.84787 1.09432 1.00027 1.97424 1.23311 0.93861 1.04299 1.05720 1.20341 0.90771 0.81648 0.74880 1.90679 1.58734 1.41681 1.48298 1.48032 1.05897 1.05998 1.75311 1.21831 0.94240 0.87114 0.98762 1.21963 0.96254 0.99984 0.99222 1.21336 0.93330 0.95184 1.03720 1.21764 0.91307 0.99489 1.01965 0.87792 1.20517 0.87472 0.85424 0.75068 1.90692 1.83126 1.18634 1.48705 1.45494 1.04897 1.10513 1.74449 1.21609 0.78732 0.98137 1.04357 1.23438 1.02807 1.03423 0.93505 1.23387 1.01474 1.01994 0.95956 1.21352 0.82377 0.99471 0.96665 0.91913 0.88405 0.88387 0.91082 0.88795 0.89951 0.91054 0.90898 0.90790 0.75950 0.84492 0.88246 0.87962 0.87861 0.88292 0.88627 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 13.97 55.49 0.78 -25.43 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.44 27.74 -169.99 -4.71 16.73 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.27 4.50 36.00 0.16 -2.10 16 11 C 0.54 9.14 7.72 -10.98 -0.08 9.05 16 12 O -0.52 -10.55 15.27 5.56 0.08 -10.47 16 13 N -0.62 -7.78 2.98 -172.81 -0.51 -8.29 16 14 C 0.10 1.02 6.34 -3.71 -0.02 1.00 16 15 C -0.14 -1.13 6.08 -26.61 -0.16 -1.29 16 16 C -0.10 -0.88 4.46 -26.67 -0.12 -1.00 16 17 C -0.12 -1.16 2.68 -91.66 -0.25 -1.41 16 18 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 19 C 0.53 5.51 7.16 -10.99 -0.08 5.43 16 20 O -0.54 -7.23 15.56 5.55 0.09 -7.14 16 21 N -0.70 -5.98 5.47 -53.81 -0.29 -6.27 16 22 C 0.08 0.62 6.43 -67.94 -0.44 0.18 16 23 C -0.19 -1.26 10.46 -26.74 -0.28 -1.54 16 24 C -0.19 -1.16 10.45 -26.74 -0.28 -1.44 16 25 C 0.13 1.35 5.56 -3.74 -0.02 1.33 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.10 1.69 7.69 -51.92 -0.40 1.29 16 28 H 0.10 1.71 7.94 -51.92 -0.41 1.30 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.94 5.93 -51.93 -0.31 0.63 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 35 H 0.41 2.88 8.36 -40.82 -0.34 2.54 16 36 H 0.14 1.22 7.40 -51.93 -0.38 0.84 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.10 6.60 -51.93 -0.34 0.75 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -34.27 357.63 -8.95 -43.21 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.41 Total: 1.32 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.35 Total: -3.52 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.03 Total: -39.99 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.17 Total: -17.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.27 -8.95 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050427317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.265 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds