Wall clock time and date at job start Fri Apr 10 2020 18:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47380 * 270.00264 * 3 2 1 5 5 H 1.48506 * 109.46972 * 30.00489 * 3 2 1 6 6 H 1.48501 * 109.47000 * 149.99822 * 3 2 1 7 7 C 1.38799 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00209 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 15 15 C 1.53191 * 108.77343 * 126.37163 * 14 13 11 16 16 C 1.53039 * 109.31416 * 54.63452 * 15 14 13 17 17 C 1.53070 * 109.65812 * 298.69913 * 16 15 14 18 18 H 1.08997 * 109.38860 * 301.27396 * 17 16 15 19 19 C 1.50703 * 109.62238 * 181.16791 * 17 16 15 20 20 O 1.21283 * 119.99864 * 0.10588 * 19 17 16 21 21 N 1.34772 * 119.99998 * 180.10868 * 19 17 16 22 22 C 1.46498 * 119.99978 * 179.97438 * 21 19 17 23 23 C 1.52993 * 117.50147 * 223.61784 * 22 21 19 24 24 C 1.52992 * 60.00275 * 252.51117 * 23 22 21 25 25 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 26 26 H 0.97005 * 120.00303 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47163 * 59.99853 * 10 9 7 28 28 H 1.08997 * 109.47104 * 300.00354 * 10 9 7 29 29 H 1.08998 * 109.58787 * 246.16207 * 14 13 11 30 30 H 1.08999 * 109.58470 * 6.58560 * 14 13 11 31 31 H 1.09002 * 109.49529 * 174.58688 * 15 14 13 32 32 H 1.09001 * 109.49774 * 294.68244 * 15 14 13 33 33 H 1.09007 * 109.45640 * 58.65727 * 16 15 14 34 34 H 1.09000 * 109.45893 * 178.62518 * 16 15 14 35 35 H 0.97001 * 119.99863 * 0.02562 * 21 19 17 36 36 H 1.08998 * 115.55125 * 9.33235 * 22 21 19 37 37 H 1.09006 * 117.49756 * 0.02562 * 23 22 21 38 38 H 1.09000 * 117.50390 * 145.01825 * 23 22 21 39 39 H 1.09004 * 117.49998 * 252.50917 * 24 23 22 40 40 H 1.09001 * 117.51999 * 107.47864 * 24 23 22 41 41 H 1.09002 * 109.58751 * 353.41659 * 25 13 11 42 42 H 1.08996 * 109.58750 * 113.69843 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2325 -0.0008 12 8 6.3439 -2.2964 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 5.1242 -5.6391 -0.0022 15 6 5.4855 -6.5621 -1.1702 16 6 6.9639 -6.9456 -1.0737 17 6 7.8297 -5.6867 -1.1671 18 1 7.6288 -5.1786 -2.1103 19 6 9.2861 -6.0680 -1.1007 20 8 9.6035 -7.2335 -0.9914 21 7 10.2360 -5.1140 -1.1628 22 6 11.6518 -5.4846 -1.0977 23 6 12.5646 -4.6348 -0.2115 24 6 12.6624 -4.5286 -1.7346 25 6 7.4921 -4.7524 -0.0016 26 1 -0.4851 0.8401 0.0004 27 1 3.6432 -3.4318 -0.8906 28 1 3.6439 -3.4314 0.8893 29 1 5.2177 -6.1845 0.9369 30 1 4.1005 -5.2839 -0.1203 31 1 4.8725 -7.4622 -1.1257 32 1 5.3048 -6.0444 -2.1123 33 1 7.1489 -7.4413 -0.1206 34 1 7.2177 -7.6219 -1.8899 35 1 9.9822 -4.1818 -1.2499 36 1 11.8616 -6.5525 -1.1591 37 1 12.1115 -3.8001 0.3235 38 1 13.3749 -5.1435 0.3107 39 1 13.5371 -4.9674 -2.2146 40 1 12.2738 -3.6240 -2.2024 41 1 8.0307 -3.8122 -0.1194 42 1 7.7797 -5.2230 0.9385 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050427317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:15 Heat of formation + Delta-G solvation = -76.367570 kcal Electronic energy + Delta-G solvation = -23413.023505 eV Core-core repulsion = 19904.744714 eV Total energy + Delta-G solvation = -3508.278791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67394 -40.61985 -38.49416 -37.77280 -34.66324 -34.40558 -33.81025 -32.34172 -30.65254 -27.86029 -26.30966 -25.47338 -23.32295 -23.27633 -22.12828 -21.37603 -20.42765 -19.56379 -18.46383 -18.02351 -17.46190 -17.25062 -17.03065 -16.64434 -16.10578 -15.75204 -15.55585 -15.29220 -15.12218 -14.89060 -14.82201 -14.45270 -14.28975 -13.74738 -13.58831 -13.52171 -13.32800 -13.00737 -12.66238 -12.62066 -12.48611 -12.36008 -12.00941 -11.99306 -11.85422 -11.67769 -11.48172 -11.16012 -11.10868 -10.83092 -10.50435 -9.83061 -9.75474 -8.98617 -8.50307 -6.21034 0.97294 1.32335 1.34551 1.47180 1.52232 1.56529 1.93525 2.11559 2.25837 2.68896 2.88106 2.95620 3.43508 3.53168 3.73801 3.74687 3.78803 3.99881 4.02753 4.03618 4.11675 4.19293 4.21050 4.41714 4.47967 4.54231 4.70382 4.73759 4.75073 4.81402 4.88785 5.00733 5.04552 5.13590 5.18658 5.35371 5.43401 5.46644 5.72033 6.13073 6.19691 6.38671 6.94957 7.03710 7.09598 8.61973 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002955 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.245515 B = 9474.116566 C =10651.858232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.236 1.236 7 C -0.527 4.527 8 H 0.063 0.937 9 S -0.175 6.175 10 C -0.107 4.107 11 C 0.538 3.462 12 O -0.558 6.558 13 N -0.603 5.603 14 C 0.095 3.905 15 C -0.127 4.127 16 C -0.095 4.095 17 C -0.113 4.113 18 H 0.109 0.891 19 C 0.529 3.471 20 O -0.570 6.570 21 N -0.695 5.695 22 C 0.054 3.946 23 C -0.187 4.187 24 C -0.176 4.176 25 C 0.126 3.874 26 H 0.276 0.724 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.289 -14.323 -2.552 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.674 4.674 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.258 4.258 11 C 0.326 3.674 12 O -0.436 6.436 13 N -0.337 5.337 14 C -0.027 4.027 15 C -0.166 4.166 16 C -0.133 4.133 17 C -0.135 4.135 18 H 0.127 0.873 19 C 0.316 3.684 20 O -0.448 6.448 21 N -0.345 5.345 22 C -0.051 4.051 23 C -0.226 4.226 24 C -0.214 4.214 25 C 0.003 3.997 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.249 0.751 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.461 -13.695 -2.467 26.422 hybrid contribution -1.266 0.145 -0.073 1.277 sum 21.195 -13.550 -2.540 25.284 Atomic orbital electron populations 1.70015 1.07314 1.28991 1.49201 1.25562 0.95261 1.02262 0.92962 0.85872 0.80713 0.79627 0.80196 1.18690 1.18545 1.15952 1.22448 0.90201 0.96670 1.58122 0.91864 1.84690 1.06476 1.06098 1.97567 1.23289 0.95798 0.99508 1.07204 1.19989 0.89581 0.82727 0.75144 1.90668 1.59119 1.43197 1.50635 1.47992 1.07228 1.05197 1.73238 1.22130 0.93606 0.86414 1.00544 1.21924 0.96015 1.00403 0.98210 1.21318 0.93591 0.94769 1.03603 1.21678 0.90928 0.99444 1.01493 0.87306 1.20616 0.87978 0.85125 0.74663 1.90680 1.83594 1.19959 1.50591 1.45469 1.05105 1.10591 1.73314 1.21673 0.78678 0.98030 1.06748 1.23487 1.02309 1.02823 0.93949 1.23457 1.00841 1.01327 0.95773 1.21445 0.80937 0.99579 0.97727 0.91408 0.86841 0.87002 0.89175 0.88790 0.87739 0.91355 0.91112 0.90848 0.75109 0.85807 0.88247 0.87021 0.86627 0.87783 0.89260 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.13 13.97 21.65 0.30 -54.83 16 2 C 0.04 2.59 5.50 84.86 0.47 3.06 16 3 Si 0.91 44.20 27.74 68.60 1.90 46.10 16 4 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -11.33 6.74 99.48 0.67 -10.66 16 7 C -0.53 -29.97 10.04 67.95 0.68 -29.29 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 9 S -0.17 -8.57 18.55 -56.49 -1.05 -9.62 16 10 C -0.11 -3.87 4.50 71.24 0.32 -3.55 16 11 C 0.54 17.60 7.72 87.66 0.68 18.27 16 12 O -0.56 -22.23 15.27 -3.01 -0.05 -22.27 16 13 N -0.60 -13.98 2.98 -819.02 -2.44 -16.42 16 14 C 0.09 1.61 6.34 86.36 0.55 2.16 16 15 C -0.13 -1.77 6.08 30.67 0.19 -1.58 16 16 C -0.09 -1.51 4.46 30.63 0.14 -1.37 16 17 C -0.11 -1.95 2.68 -11.47 -0.03 -1.98 16 18 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 19 C 0.53 10.51 7.16 87.66 0.63 11.13 16 20 O -0.57 -15.06 15.56 -3.04 -0.05 -15.11 16 21 N -0.69 -11.12 5.47 -442.55 -2.42 -13.54 16 22 C 0.05 0.81 6.43 44.99 0.29 1.10 16 23 C -0.19 -2.15 10.46 30.59 0.32 -1.83 16 24 C -0.18 -1.84 10.45 30.59 0.32 -1.52 16 25 C 0.13 2.50 5.56 86.35 0.48 2.98 16 26 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.11 3.74 7.69 -2.39 -0.02 3.73 16 28 H 0.11 3.73 7.94 -2.40 -0.02 3.72 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.64 5.93 -2.39 -0.01 1.62 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.19 8.13 -2.38 -0.02 1.17 16 34 H 0.07 1.22 8.07 -2.39 -0.02 1.20 16 35 H 0.41 5.38 8.36 -92.71 -0.78 4.60 16 36 H 0.12 2.20 7.40 -2.39 -0.02 2.18 16 37 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.93 6.60 -2.39 -0.02 1.92 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -73.93 357.63 1.45 -72.48 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.22 Total: 15.63 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.02 Total: -2.42 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -4.56 Total: -84.79 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.09 Total: -37.38 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.10 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.62 kcal Total: -73.93 1.45 -72.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050427317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.887 kcal (2) G-P(sol) polarization free energy of solvation -73.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds