Wall clock time and date at job start Fri Apr 10 2020 18:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00324 * 2 1 4 4 H 1.48500 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47116 * 300.00003 * 3 2 1 6 6 H 1.48497 * 109.47038 * 59.99925 * 3 2 1 7 7 C 1.38957 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99355 * 198.29143 * 7 2 1 9 9 N 1.37088 * 120.00152 * 18.29224 * 7 2 1 10 10 C 1.34775 * 120.00360 * 44.11222 * 9 7 2 11 11 O 1.21296 * 119.99961 * 0.27626 * 10 9 7 12 12 C 1.50695 * 120.00304 * 180.27521 * 10 9 7 13 13 C 1.50700 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.34544 * 126.07967 * 124.71710 * 13 12 10 15 15 O 1.34774 * 107.27094 * 179.89906 * 14 13 12 16 16 C 1.34422 * 107.69587 * 0.35919 * 15 14 13 17 17 C 1.47828 * 125.72953 * 179.80733 * 16 15 14 18 18 C 1.39570 * 120.14126 * 179.68203 * 17 16 15 19 19 C 1.37969 * 119.84931 * 179.75005 * 18 17 16 20 20 C 1.38351 * 120.14547 * 0.55064 * 19 18 17 21 21 C 1.38359 * 120.28825 * 359.70441 * 20 19 18 22 22 C 1.37958 * 120.15062 * 0.02562 * 21 20 19 23 23 N 1.31228 * 108.54519 * 359.77515 * 16 15 14 24 24 C 1.46504 * 119.99736 * 224.38606 * 9 7 2 25 25 C 1.52997 * 117.50119 * 2.95077 * 24 9 7 26 26 C 1.52995 * 60.00043 * 252.50940 * 25 24 9 27 27 H 0.97003 * 119.99681 * 354.92958 * 1 2 3 28 28 H 1.09008 * 109.47058 * 300.00272 * 12 10 9 29 29 H 1.09005 * 109.47264 * 59.99660 * 12 10 9 30 30 H 1.07998 * 126.36752 * 0.02562 * 14 13 12 31 31 H 1.07992 * 120.07580 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.92635 * 180.29540 * 19 18 17 33 33 H 1.08000 * 119.85543 * 179.72238 * 20 19 18 34 34 H 1.08009 * 119.92693 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.07887 * 180.02562 * 22 21 20 36 36 H 1.09005 * 115.55115 * 148.65958 * 24 9 7 37 37 H 1.09000 * 117.49654 * 359.97438 * 25 24 9 38 38 H 1.08998 * 117.50331 * 145.01580 * 25 24 9 39 39 H 1.09002 * 117.49869 * 252.51132 * 26 25 24 40 40 H 1.08995 * 117.52176 * 107.47804 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2035 0.0005 8 1 3.0479 -1.2270 0.2941 9 7 1.3752 -2.3608 -0.3716 10 6 0.5772 -2.3731 -1.4576 11 8 0.4236 -1.3613 -2.1088 12 6 -0.1241 -3.6437 -1.8631 13 6 -0.9470 -3.3907 -3.0999 14 6 -0.8669 -4.0711 -4.2578 15 8 -1.7700 -3.5332 -5.1013 16 6 -2.3849 -2.5279 -4.4548 17 6 -3.4459 -1.6633 -5.0134 18 6 -4.0106 -0.6535 -4.2327 19 6 -4.9968 0.1533 -4.7619 20 6 -5.4342 -0.0444 -6.0595 21 6 -4.8823 -1.0471 -6.8368 22 6 -3.8916 -1.8572 -6.3217 23 7 -1.8857 -2.4431 -3.2441 24 6 1.5608 -3.5829 0.4149 25 6 2.4179 -3.4864 1.6786 26 6 2.9599 -4.2015 0.4394 27 1 -0.4850 0.8368 0.0742 28 1 0.6158 -4.4167 -2.0712 29 1 -0.7758 -3.9732 -1.0537 30 1 -0.2038 -4.8964 -4.4711 31 1 -3.6731 -0.5011 -3.2183 32 1 -5.4312 0.9381 -4.1605 33 1 -6.2097 0.5870 -6.4675 34 1 -5.2279 -1.1960 -7.8493 35 1 -3.4613 -2.6393 -6.9297 36 1 0.7093 -4.2631 0.4346 37 1 2.8440 -2.5138 1.9246 38 1 2.1303 -4.1031 2.5301 39 1 3.0288 -5.2888 0.4756 40 1 3.7421 -3.6996 -0.1299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058290303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:30 Heat of formation + Delta-G solvation = 62.307422 kcal Electronic energy + Delta-G solvation = -25060.022173 eV Core-core repulsion = 21422.312830 eV Total energy + Delta-G solvation = -3637.709343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.87322 -38.97330 -38.47303 -36.09641 -34.53388 -32.80134 -32.37149 -31.04873 -30.90885 -29.88938 -27.39307 -24.66354 -23.66502 -22.72663 -21.71094 -21.28359 -20.90505 -20.61382 -19.10459 -17.48860 -16.60465 -16.28553 -16.04140 -15.88340 -15.47959 -14.96683 -14.65562 -14.35043 -13.95727 -13.80443 -13.65546 -13.44391 -13.22045 -12.86403 -12.57687 -12.39153 -11.79741 -11.52602 -11.37041 -11.10969 -11.08159 -10.86849 -10.82692 -10.65714 -10.40875 -10.10520 -9.94695 -9.90263 -9.70351 -9.44017 -8.99069 -8.63563 -8.04919 -7.80718 -6.93688 -6.01433 -3.77767 0.80185 1.37462 2.09191 2.96286 3.16536 3.33777 3.43420 3.45881 3.89598 4.15622 4.23030 4.34813 4.81558 4.84464 4.88834 4.92427 5.07853 5.20552 5.27602 5.37875 5.39720 5.52913 5.61415 5.69112 5.74989 5.81047 5.92988 5.96387 5.99647 6.18224 6.21855 6.23874 6.29207 6.36557 6.44918 6.51494 6.54412 6.69446 6.80638 6.88969 6.96800 7.69620 8.19626 8.35862 9.14642 9.26710 9.75037 10.39951 11.06722 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.004073 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.360736 B = 6873.265222 C = 8313.037340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.350 4.350 8 H 0.076 0.924 9 N -0.432 5.432 10 C 0.488 3.512 11 O -0.513 6.513 12 C -0.061 4.061 13 C 0.035 3.965 14 C -0.087 4.087 15 O -0.204 6.204 16 C 0.208 3.792 17 C -0.003 4.003 18 C -0.068 4.068 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.096 4.096 23 N -0.419 5.419 24 C 0.075 3.925 25 C -0.174 4.174 26 C -0.209 4.209 27 H 0.262 0.738 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.214 0.786 31 H 0.143 0.857 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 -7.753 -8.417 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.477 4.477 8 H 0.093 0.907 9 N -0.154 5.154 10 C 0.274 3.726 11 O -0.388 6.388 12 C -0.102 4.102 13 C -0.088 4.088 14 C -0.157 4.157 15 O -0.092 6.092 16 C 0.004 3.996 17 C -0.004 4.004 18 C -0.087 4.087 19 C -0.139 4.139 20 C -0.128 4.128 21 C -0.144 4.144 22 C -0.116 4.116 23 N -0.147 5.147 24 C -0.031 4.031 25 C -0.211 4.211 26 C -0.248 4.248 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.231 0.769 31 H 0.161 0.839 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.716 -6.649 -8.426 13.219 hybrid contribution 0.806 0.132 -0.270 0.860 sum -6.910 -6.517 -8.696 12.878 Atomic orbital electron populations 1.69849 1.06371 1.27125 1.42466 1.25229 0.94783 0.99203 0.94434 0.86223 0.79810 0.83029 0.77401 1.19675 1.20795 1.21248 1.18812 0.94389 0.83842 1.50653 0.90675 1.42746 1.44557 1.06807 1.21281 1.19448 0.82925 0.88416 0.81765 1.90569 1.61376 1.33997 1.52855 1.20106 0.97214 0.99742 0.93171 1.21302 0.97303 0.93491 0.96695 1.24737 0.97473 1.03741 0.89757 1.84402 1.42361 1.40024 1.42365 1.23810 0.97525 0.90636 0.87586 1.17301 0.93779 0.95236 0.94122 1.21356 0.94262 0.92407 1.00708 1.21133 0.97380 0.99640 0.95764 1.21300 0.99541 0.97669 0.94326 1.21002 0.97197 0.96109 1.00051 1.21203 0.96875 0.99565 0.93938 1.70654 1.09050 1.19484 1.15473 1.21699 0.92362 0.91717 0.97344 1.23042 1.04581 1.02445 0.91072 1.23316 0.99965 0.98342 1.03202 0.92742 0.89068 0.88967 0.76913 0.83920 0.85216 0.85794 0.85577 0.85400 0.88129 0.87523 0.89882 0.89877 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.04 11.74 55.50 0.65 -24.38 16 2 C 0.07 2.14 4.38 -17.46 -0.08 2.07 16 3 Si 0.91 22.47 29.59 -169.99 -5.03 17.44 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.35 -9.69 7.93 -14.94 -0.12 -9.80 16 8 H 0.08 2.02 7.25 -52.48 -0.38 1.64 16 9 N -0.43 -10.87 2.83 -107.73 -0.31 -11.18 16 10 C 0.49 12.58 6.95 -10.99 -0.08 12.50 16 11 O -0.51 -15.52 13.33 5.54 0.07 -15.44 16 12 C -0.06 -1.20 4.89 -29.04 -0.14 -1.35 16 13 C 0.03 0.69 5.87 -82.88 -0.49 0.21 16 14 C -0.09 -1.41 12.06 29.43 0.35 -1.05 16 15 O -0.20 -3.51 10.52 4.08 0.04 -3.47 16 16 C 0.21 3.96 7.90 -13.89 -0.11 3.85 16 17 C 0.00 -0.05 5.87 -104.98 -0.62 -0.67 16 18 C -0.07 -1.07 9.69 -39.18 -0.38 -1.45 16 19 C -0.12 -1.50 10.03 -39.64 -0.40 -1.90 16 20 C -0.11 -1.16 10.04 -39.49 -0.40 -1.55 16 21 C -0.13 -1.34 10.03 -39.64 -0.40 -1.74 16 22 C -0.10 -1.25 9.72 -39.19 -0.38 -1.63 16 23 N -0.42 -9.27 10.29 -7.97 -0.08 -9.35 16 24 C 0.08 1.49 5.87 -67.93 -0.40 1.09 16 25 C -0.17 -3.12 9.80 -26.74 -0.26 -3.39 16 26 C -0.21 -3.50 10.36 -26.74 -0.28 -3.78 16 27 H 0.26 7.66 8.32 -40.82 -0.34 7.32 16 28 H 0.09 1.43 8.07 -51.92 -0.42 1.01 16 29 H 0.09 1.71 7.57 -51.93 -0.39 1.32 16 30 H 0.21 2.37 8.06 -52.49 -0.42 1.94 16 31 H 0.14 2.53 7.83 -52.49 -0.41 2.12 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.13 1.47 7.90 -52.49 -0.41 1.06 16 36 H 0.10 1.76 6.96 -51.93 -0.36 1.39 16 37 H 0.11 2.14 6.72 -51.93 -0.35 1.79 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -36.40 348.30 -8.39 -44.79 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.82 Total: 4.96 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -4.16 Total: -8.60 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.26 Total: -44.91 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.12 Total: -18.91 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.40 -8.39 -44.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.095 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds