Wall clock time and date at job start Fri Apr 10 2020 18:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00324 * 2 1 4 4 H 1.48500 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47116 * 300.00003 * 3 2 1 6 6 H 1.48497 * 109.47038 * 59.99925 * 3 2 1 7 7 C 1.38957 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99355 * 198.29143 * 7 2 1 9 9 N 1.37088 * 120.00152 * 18.29224 * 7 2 1 10 10 C 1.34775 * 120.00360 * 44.11222 * 9 7 2 11 11 O 1.21296 * 119.99961 * 0.27626 * 10 9 7 12 12 C 1.50695 * 120.00304 * 180.27521 * 10 9 7 13 13 C 1.50700 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.34544 * 126.07967 * 124.71710 * 13 12 10 15 15 O 1.34774 * 107.27094 * 179.89906 * 14 13 12 16 16 C 1.34422 * 107.69587 * 0.35919 * 15 14 13 17 17 C 1.47828 * 125.72953 * 179.80733 * 16 15 14 18 18 C 1.39570 * 120.14126 * 179.68203 * 17 16 15 19 19 C 1.37969 * 119.84931 * 179.75005 * 18 17 16 20 20 C 1.38351 * 120.14547 * 0.55064 * 19 18 17 21 21 C 1.38359 * 120.28825 * 359.70441 * 20 19 18 22 22 C 1.37958 * 120.15062 * 0.02562 * 21 20 19 23 23 N 1.31228 * 108.54519 * 359.77515 * 16 15 14 24 24 C 1.46504 * 119.99736 * 224.38606 * 9 7 2 25 25 C 1.52997 * 117.50119 * 2.95077 * 24 9 7 26 26 C 1.52995 * 60.00043 * 252.50940 * 25 24 9 27 27 H 0.97003 * 119.99681 * 354.92958 * 1 2 3 28 28 H 1.09008 * 109.47058 * 300.00272 * 12 10 9 29 29 H 1.09005 * 109.47264 * 59.99660 * 12 10 9 30 30 H 1.07998 * 126.36752 * 0.02562 * 14 13 12 31 31 H 1.07992 * 120.07580 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.92635 * 180.29540 * 19 18 17 33 33 H 1.08000 * 119.85543 * 179.72238 * 20 19 18 34 34 H 1.08009 * 119.92693 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.07887 * 180.02562 * 22 21 20 36 36 H 1.09005 * 115.55115 * 148.65958 * 24 9 7 37 37 H 1.09000 * 117.49654 * 359.97438 * 25 24 9 38 38 H 1.08998 * 117.50331 * 145.01580 * 25 24 9 39 39 H 1.09002 * 117.49869 * 252.51132 * 26 25 24 40 40 H 1.08995 * 117.52176 * 107.47804 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2035 0.0005 8 1 3.0479 -1.2270 0.2941 9 7 1.3752 -2.3608 -0.3716 10 6 0.5772 -2.3731 -1.4576 11 8 0.4236 -1.3613 -2.1088 12 6 -0.1241 -3.6437 -1.8631 13 6 -0.9470 -3.3907 -3.0999 14 6 -0.8669 -4.0711 -4.2578 15 8 -1.7700 -3.5332 -5.1013 16 6 -2.3849 -2.5279 -4.4548 17 6 -3.4459 -1.6633 -5.0134 18 6 -4.0106 -0.6535 -4.2327 19 6 -4.9968 0.1533 -4.7619 20 6 -5.4342 -0.0444 -6.0595 21 6 -4.8823 -1.0471 -6.8368 22 6 -3.8916 -1.8572 -6.3217 23 7 -1.8857 -2.4431 -3.2441 24 6 1.5608 -3.5829 0.4149 25 6 2.4179 -3.4864 1.6786 26 6 2.9599 -4.2015 0.4394 27 1 -0.4850 0.8368 0.0742 28 1 0.6158 -4.4167 -2.0712 29 1 -0.7758 -3.9732 -1.0537 30 1 -0.2038 -4.8964 -4.4711 31 1 -3.6731 -0.5011 -3.2183 32 1 -5.4312 0.9381 -4.1605 33 1 -6.2097 0.5870 -6.4675 34 1 -5.2279 -1.1960 -7.8493 35 1 -3.4613 -2.6393 -6.9297 36 1 0.7093 -4.2631 0.4346 37 1 2.8440 -2.5138 1.9246 38 1 2.1303 -4.1031 2.5301 39 1 3.0288 -5.2888 0.4756 40 1 3.7421 -3.6996 -0.1299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058290303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:29 Heat of formation + Delta-G solvation = 37.228373 kcal Electronic energy + Delta-G solvation = -25061.109682 eV Core-core repulsion = 21422.312830 eV Total energy + Delta-G solvation = -3638.796852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.22949 -40.31312 -39.94847 -37.76609 -36.01446 -34.72112 -33.68726 -32.84091 -31.97808 -31.32207 -28.87164 -26.61213 -24.83911 -23.84210 -23.14844 -22.81745 -22.30670 -21.93612 -20.85913 -18.72051 -18.31262 -17.81677 -17.50470 -17.32504 -16.73604 -16.48229 -16.24491 -15.80082 -15.66630 -15.21374 -14.99383 -14.68025 -14.41322 -14.26349 -14.03042 -13.89285 -13.47374 -13.22909 -12.99435 -12.75736 -12.51573 -12.39283 -12.22591 -12.13030 -12.07269 -11.99101 -11.61656 -11.34443 -11.16876 -10.73294 -10.60551 -9.98075 -9.88045 -9.16705 -8.91819 -8.16462 -5.94927 -0.31426 0.38720 0.85315 1.31189 1.39418 1.46682 1.70406 1.80848 2.26788 2.46646 2.83711 2.98631 3.13248 3.18626 3.41697 3.77063 3.89385 3.99205 4.02098 4.18051 4.20355 4.22704 4.34381 4.43991 4.46187 4.49713 4.58136 4.65743 4.81220 4.88141 4.93569 4.96559 5.05357 5.08711 5.21547 5.35838 5.45185 5.47943 5.48710 5.51080 5.52968 5.94132 6.22536 6.84527 7.07370 7.28552 7.75209 8.44622 8.91070 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.004073 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.360736 B = 6873.265222 C = 8313.037340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.021 3.979 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.353 4.353 8 H 0.076 0.924 9 N -0.449 5.449 10 C 0.471 3.529 11 O -0.572 6.572 12 C -0.044 4.044 13 C -0.015 4.015 14 C -0.056 4.056 15 O -0.200 6.200 16 C 0.200 3.800 17 C -0.037 4.037 18 C -0.098 4.098 19 C -0.124 4.124 20 C -0.096 4.096 21 C -0.115 4.115 22 C -0.096 4.096 23 N -0.478 5.478 24 C 0.044 3.956 25 C -0.175 4.175 26 C -0.175 4.175 27 H 0.255 0.745 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.269 0.731 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -9.831 -10.198 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.179 1.179 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.481 4.481 8 H 0.094 0.906 9 N -0.170 5.170 10 C 0.260 3.740 11 O -0.452 6.452 12 C -0.085 4.085 13 C -0.137 4.137 14 C -0.126 4.126 15 O -0.087 6.087 16 C -0.003 4.003 17 C -0.039 4.039 18 C -0.117 4.117 19 C -0.142 4.142 20 C -0.114 4.114 21 C -0.132 4.132 22 C -0.116 4.116 23 N -0.206 5.206 24 C -0.061 4.061 25 C -0.213 4.213 26 C -0.214 4.214 27 H 0.064 0.936 28 H 0.154 0.846 29 H 0.115 0.885 30 H 0.284 0.716 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.096 0.904 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.762 -8.771 -10.158 15.504 hybrid contribution 0.835 0.727 0.239 1.133 sum -6.927 -8.043 -9.919 14.528 Atomic orbital electron populations 1.69982 1.07925 1.27084 1.45173 1.26034 0.95398 1.02477 0.94599 0.85349 0.79470 0.79365 0.76857 1.17927 1.22847 1.19746 1.19054 0.94595 0.85280 1.49184 0.90599 1.42997 1.44192 1.07873 1.21976 1.20498 0.82517 0.89822 0.81202 1.90522 1.63302 1.36619 1.54758 1.19984 0.97616 0.97376 0.93496 1.21583 0.98577 0.95036 0.98460 1.25622 0.96044 1.03110 0.87839 1.84419 1.42436 1.39588 1.42270 1.24310 0.97816 0.91059 0.87153 1.17554 0.94491 0.95898 0.95911 1.21219 0.96557 0.94438 0.99507 1.21383 0.96346 0.99276 0.97203 1.21781 0.99286 0.97385 0.92920 1.21508 0.95431 0.94632 1.01636 1.21448 0.97326 1.00338 0.92442 1.70583 1.10970 1.21457 1.17618 1.22031 0.95091 0.90526 0.98487 1.23100 1.03914 1.02074 0.92181 1.23323 0.96647 1.00520 1.00884 0.93618 0.84638 0.88490 0.71575 0.87947 0.83533 0.81691 0.81442 0.83978 0.85584 0.90401 0.86562 0.85356 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.77 11.74 21.67 0.25 -55.52 16 2 C 0.02 1.27 4.38 84.93 0.37 1.64 16 3 Si 0.96 48.08 29.59 68.60 2.03 50.11 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.35 -20.15 7.93 84.04 0.67 -19.48 16 8 H 0.08 4.18 7.25 -2.91 -0.02 4.16 16 9 N -0.45 -23.01 2.83 -613.13 -1.74 -24.75 16 10 C 0.47 25.07 6.95 87.66 0.61 25.68 16 11 O -0.57 -36.68 13.33 -3.08 -0.04 -36.72 16 12 C -0.04 -1.74 4.89 29.10 0.14 -1.60 16 13 C -0.02 -0.62 5.87 41.36 0.24 -0.38 16 14 C -0.06 -1.75 12.06 66.97 0.81 -0.94 16 15 O -0.20 -6.83 10.52 -8.31 -0.09 -6.92 16 16 C 0.20 8.01 7.90 87.32 0.69 8.70 16 17 C -0.04 -1.27 5.87 -20.10 -0.12 -1.39 16 18 C -0.10 -3.34 9.69 22.53 0.22 -3.12 16 19 C -0.12 -3.07 10.03 22.23 0.22 -2.84 16 20 C -0.10 -1.73 10.04 22.33 0.22 -1.50 16 21 C -0.11 -2.07 10.03 22.23 0.22 -1.84 16 22 C -0.10 -2.39 9.72 22.52 0.22 -2.17 16 23 N -0.48 -22.58 10.29 -293.19 -3.02 -25.59 16 24 C 0.04 1.66 5.87 44.99 0.26 1.93 16 25 C -0.18 -5.99 9.80 30.59 0.30 -5.69 16 26 C -0.18 -5.34 10.36 30.59 0.32 -5.02 16 27 H 0.25 15.95 8.32 -92.71 -0.77 15.18 16 28 H 0.14 3.91 8.07 -2.38 -0.02 3.89 16 29 H 0.10 3.61 7.57 -2.38 -0.02 3.59 16 30 H 0.27 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.10 4.22 7.83 -2.91 -0.02 4.19 16 32 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 3.02 7.90 -2.91 -0.02 3.00 16 36 H 0.13 4.12 6.96 -2.38 -0.02 4.10 16 37 H 0.08 3.13 6.72 -2.39 -0.02 3.11 16 38 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -88.95 348.30 3.86 -85.09 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.06 Total: 22.33 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.40 Total: -8.02 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.50 Total: -105.87 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.13 Total: -43.64 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -88.95 3.86 -85.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.317 kcal (2) G-P(sol) polarization free energy of solvation -88.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds