Wall clock time and date at job start Fri Apr 10 2020 18:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00217 * 2 1 4 4 C 1.50694 * 109.47309 * 270.00464 * 3 2 1 5 5 H 1.07998 * 120.00182 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00070 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00126 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99924 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47256 * 90.00083 * 8 6 4 10 10 H 1.48500 * 109.47237 * 210.00173 * 8 6 4 11 11 H 1.48501 * 109.46909 * 330.00012 * 8 6 4 12 12 C 1.34779 * 119.99993 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99918 * 186.16500 * 12 2 1 14 14 C 1.47600 * 119.99888 * 6.17380 * 12 2 1 15 15 C 1.39735 * 120.08617 * 139.15798 * 14 12 2 16 16 C 1.37701 * 119.91377 * 180.02562 * 15 14 12 17 17 C 1.39021 * 120.08216 * 359.97438 * 16 15 14 18 18 O 1.35696 * 119.90833 * 179.72197 * 17 16 15 19 19 C 1.35905 * 117.99588 * 103.19066 * 18 17 16 20 20 C 1.39166 * 120.47205 * 183.32252 * 19 18 17 21 21 C 1.38530 * 118.36706 * 179.97438 * 20 19 18 22 22 C 1.38260 * 119.22594 * 0.02562 * 21 20 19 23 23 N 1.31852 * 120.89170 * 359.97438 * 22 21 20 24 24 C 1.31839 * 121.77892 * 359.71259 * 23 22 21 25 25 C 1.39015 * 120.17418 * 0.02562 * 17 16 15 26 26 C 1.37695 * 120.08889 * 359.97438 * 25 17 16 27 27 H 1.08995 * 109.47109 * 269.58023 * 1 2 3 28 28 H 1.09005 * 109.47164 * 29.58630 * 1 2 3 29 29 H 1.09005 * 109.47121 * 149.58447 * 1 2 3 30 30 H 1.08998 * 109.46488 * 30.00190 * 3 2 1 31 31 H 1.08997 * 109.47172 * 149.99779 * 3 2 1 32 32 H 0.97008 * 120.00243 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.05020 * 359.97438 * 15 14 12 34 34 H 1.08001 * 119.95375 * 179.97438 * 16 15 14 35 35 H 1.07994 * 120.81567 * 0.02562 * 20 19 18 36 36 H 1.08001 * 120.38518 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.55071 * 179.97438 * 22 21 20 38 38 H 1.08010 * 119.65582 * 180.30980 * 24 23 22 39 39 H 1.08004 * 119.95567 * 179.97438 * 25 17 16 40 40 H 1.07997 * 120.04651 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3465 3.2570 -2.9125 8 14 3.7340 3.9286 -0.2528 9 1 5.1071 3.5067 0.1238 10 1 3.7499 5.3553 -0.6645 11 1 2.8274 3.7595 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3494 -1.1703 0.1126 14 6 1.4073 -2.4417 -0.1386 15 6 1.9235 -3.4624 -0.9412 16 6 1.2378 -4.6497 -1.0679 17 6 0.0336 -4.8339 -0.3980 18 8 -0.6421 -6.0032 -0.5299 19 6 -0.5779 -6.8959 0.4929 20 6 -1.1938 -8.1391 0.3843 21 6 -1.1005 -9.0155 1.4530 22 6 -0.4047 -8.6296 2.5837 23 7 0.1676 -7.4438 2.6546 24 6 0.1075 -6.5832 1.6577 25 6 -0.4833 -3.8208 0.4014 26 6 0.1965 -2.6306 0.5331 27 1 -0.3633 -0.0075 1.0276 28 1 -0.3634 0.8937 -0.5074 29 1 -0.3633 -0.8863 -0.5203 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.8234 4.0829 -3.0898 33 1 2.8588 -3.3200 -1.4623 34 1 1.6360 -5.4389 -1.6884 35 1 -1.7306 -8.4142 -0.5115 36 1 -1.5658 -9.9889 1.4036 37 1 -0.3290 -9.3085 3.4202 38 1 0.5932 -5.6229 1.7507 39 1 -1.4193 -3.9675 0.9199 40 1 -0.2058 -1.8439 1.1540 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058380658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:33 Heat of formation + Delta-G solvation = 19.856829 kcal Electronic energy + Delta-G solvation = -24421.791904 eV Core-core repulsion = 20782.241765 eV Total energy + Delta-G solvation = -3639.550139 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46802 -40.03135 -39.07840 -37.29793 -35.13441 -32.86574 -32.62331 -31.40868 -31.07717 -30.23583 -28.28793 -26.28613 -24.68616 -23.97983 -23.13589 -22.83828 -21.81025 -19.26451 -19.12693 -17.58989 -17.07580 -16.99278 -16.94392 -16.46401 -15.56459 -15.31840 -14.85843 -14.61844 -14.55179 -14.35148 -14.10927 -13.73414 -13.56080 -13.37518 -13.06751 -12.72886 -12.62274 -12.46516 -12.39376 -12.14250 -11.96915 -11.51386 -11.10501 -10.96987 -10.56546 -10.21205 -10.15101 -9.88652 -9.62196 -9.31268 -9.22430 -8.96851 -8.71500 -8.63136 -7.81832 -6.13129 -4.12960 0.58803 0.73400 0.88386 1.13823 2.63518 3.15633 3.26678 3.32559 3.34676 3.42006 3.54256 3.87581 4.17422 4.30046 4.35843 4.48599 4.60918 4.64257 4.66277 4.80772 4.91517 5.10720 5.15649 5.19886 5.25868 5.41134 5.53862 5.59485 5.67503 5.68469 5.79992 5.93161 6.05553 6.10959 6.17120 6.25276 6.47556 6.63679 6.88119 7.14343 7.21088 7.54468 7.59092 8.08558 8.40411 8.76884 8.90131 9.46326 10.99983 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.035179 B = 0.002593 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.732191 B =10795.192125 C =10946.450040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.588 5.588 3 C 0.214 3.786 4 C -0.533 4.533 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.548 3.452 13 O -0.532 6.532 14 C -0.106 4.106 15 C -0.052 4.052 16 C -0.123 4.123 17 C 0.082 3.918 18 O -0.250 6.250 19 C 0.074 3.926 20 C -0.104 4.104 21 C -0.136 4.136 22 C 0.061 3.939 23 N -0.450 5.450 24 C 0.033 3.967 25 C -0.140 4.140 26 C -0.081 4.081 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.135 0.865 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.524 -22.040 8.327 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.318 5.318 3 C 0.094 3.906 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.335 3.665 13 O -0.410 6.410 14 C -0.109 4.109 15 C -0.071 4.071 16 C -0.141 4.141 17 C 0.040 3.960 18 O -0.161 6.161 19 C 0.029 3.971 20 C -0.131 4.131 21 C -0.155 4.155 22 C -0.096 4.096 23 N -0.159 5.159 24 C -0.125 4.125 25 C -0.158 4.158 26 C -0.100 4.100 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.456 -21.625 8.845 26.022 hybrid contribution -0.201 0.522 -0.271 0.622 sum -11.657 -21.103 8.574 25.588 Atomic orbital electron populations 1.22049 0.80952 1.03679 1.00361 1.47755 1.06399 1.06918 1.70764 1.19744 0.92661 0.79619 0.98591 1.21308 1.37319 1.07396 0.91125 0.90696 1.24855 0.95143 0.97310 0.95640 1.69892 1.41235 1.23555 1.18678 0.86842 0.80193 0.79769 0.82852 1.19816 1.21006 1.19016 1.18070 0.87130 0.83291 0.78031 1.90777 1.13532 1.86966 1.49740 1.20358 0.95630 0.95765 0.99176 1.21167 0.99340 0.90757 0.95815 1.21177 0.92845 0.98853 1.01232 1.18814 0.92508 0.84823 0.99846 1.84348 1.66974 1.25457 1.39286 1.20275 0.97672 0.90525 0.88665 1.20958 1.00619 0.90875 1.00614 1.22035 0.99548 1.00422 0.93541 1.22758 0.95485 0.93480 0.97916 1.67605 1.16855 1.02832 1.28595 1.23119 0.99815 1.00488 0.89083 1.21325 1.01054 0.93530 0.99903 1.21537 0.93173 0.96971 0.98308 0.93229 0.90335 0.91272 0.94899 0.94166 0.92471 0.83898 0.84490 0.83782 0.83907 0.82404 0.82176 0.84758 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.90 59.85 0.53 1.62 16 2 N -0.59 -11.93 2.86 -184.17 -0.53 -12.46 16 3 C 0.21 5.16 4.27 -5.20 -0.02 5.14 16 4 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 8 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 12 C 0.55 11.19 7.32 -12.44 -0.09 11.10 16 13 O -0.53 -13.02 16.48 5.29 0.09 -12.93 16 14 C -0.11 -1.65 5.22 -104.96 -0.55 -2.20 16 15 C -0.05 -0.74 9.64 -39.22 -0.38 -1.12 16 16 C -0.12 -1.46 9.97 -39.49 -0.39 -1.85 16 17 C 0.08 0.95 4.55 -39.00 -0.18 0.77 16 18 O -0.25 -2.79 9.98 -3.00 -0.03 -2.82 16 19 C 0.07 0.76 6.65 -39.06 -0.26 0.50 16 20 C -0.10 -0.84 10.13 -39.13 -0.40 -1.23 16 21 C -0.14 -0.90 10.11 -39.47 -0.40 -1.30 16 22 C 0.06 0.50 11.18 -17.54 -0.20 0.30 16 23 N -0.45 -5.05 10.36 -13.12 -0.14 -5.18 16 24 C 0.03 0.37 10.14 -17.37 -0.18 0.19 16 25 C -0.14 -1.51 8.70 -39.49 -0.34 -1.85 16 26 C -0.08 -0.99 7.46 -39.22 -0.29 -1.28 16 27 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 28 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.07 0.91 5.45 -51.93 -0.28 0.63 16 30 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.04 1.03 6.77 -51.93 -0.35 0.68 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.16 1.81 6.18 -52.48 -0.32 1.49 16 39 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.14 1.52 5.54 -52.49 -0.29 1.23 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -34.87 342.59 -7.46 -42.33 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.54 Total: 0.48 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.58 Total: -4.66 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.11 Total: -44.21 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.06 Total: -15.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.87 -7.46 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058380658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.191 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds