Wall clock time and date at job start Fri Apr 10 2020 18:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00217 * 2 1 4 4 C 1.50694 * 109.47309 * 270.00464 * 3 2 1 5 5 H 1.07998 * 120.00182 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00070 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00126 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99924 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47256 * 90.00083 * 8 6 4 10 10 H 1.48500 * 109.47237 * 210.00173 * 8 6 4 11 11 H 1.48501 * 109.46909 * 330.00012 * 8 6 4 12 12 C 1.34779 * 119.99993 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99918 * 186.16500 * 12 2 1 14 14 C 1.47600 * 119.99888 * 6.17380 * 12 2 1 15 15 C 1.39735 * 120.08617 * 139.15798 * 14 12 2 16 16 C 1.37701 * 119.91377 * 180.02562 * 15 14 12 17 17 C 1.39021 * 120.08216 * 359.97438 * 16 15 14 18 18 O 1.35696 * 119.90833 * 179.72197 * 17 16 15 19 19 C 1.35905 * 117.99588 * 103.19066 * 18 17 16 20 20 C 1.39166 * 120.47205 * 183.32252 * 19 18 17 21 21 C 1.38530 * 118.36706 * 179.97438 * 20 19 18 22 22 C 1.38260 * 119.22594 * 0.02562 * 21 20 19 23 23 N 1.31852 * 120.89170 * 359.97438 * 22 21 20 24 24 C 1.31839 * 121.77892 * 359.71259 * 23 22 21 25 25 C 1.39015 * 120.17418 * 0.02562 * 17 16 15 26 26 C 1.37695 * 120.08889 * 359.97438 * 25 17 16 27 27 H 1.08995 * 109.47109 * 269.58023 * 1 2 3 28 28 H 1.09005 * 109.47164 * 29.58630 * 1 2 3 29 29 H 1.09005 * 109.47121 * 149.58447 * 1 2 3 30 30 H 1.08998 * 109.46488 * 30.00190 * 3 2 1 31 31 H 1.08997 * 109.47172 * 149.99779 * 3 2 1 32 32 H 0.97008 * 120.00243 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.05020 * 359.97438 * 15 14 12 34 34 H 1.08001 * 119.95375 * 179.97438 * 16 15 14 35 35 H 1.07994 * 120.81567 * 0.02562 * 20 19 18 36 36 H 1.08001 * 120.38518 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.55071 * 179.97438 * 22 21 20 38 38 H 1.08010 * 119.65582 * 180.30980 * 24 23 22 39 39 H 1.08004 * 119.95567 * 179.97438 * 25 17 16 40 40 H 1.07997 * 120.04651 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3465 3.2570 -2.9125 8 14 3.7340 3.9286 -0.2528 9 1 5.1071 3.5067 0.1238 10 1 3.7499 5.3553 -0.6645 11 1 2.8274 3.7595 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3494 -1.1703 0.1126 14 6 1.4073 -2.4417 -0.1386 15 6 1.9235 -3.4624 -0.9412 16 6 1.2378 -4.6497 -1.0679 17 6 0.0336 -4.8339 -0.3980 18 8 -0.6421 -6.0032 -0.5299 19 6 -0.5779 -6.8959 0.4929 20 6 -1.1938 -8.1391 0.3843 21 6 -1.1005 -9.0155 1.4530 22 6 -0.4047 -8.6296 2.5837 23 7 0.1676 -7.4438 2.6546 24 6 0.1075 -6.5832 1.6577 25 6 -0.4833 -3.8208 0.4014 26 6 0.1965 -2.6306 0.5331 27 1 -0.3633 -0.0075 1.0276 28 1 -0.3634 0.8937 -0.5074 29 1 -0.3633 -0.8863 -0.5203 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.8234 4.0829 -3.0898 33 1 2.8588 -3.3200 -1.4623 34 1 1.6360 -5.4389 -1.6884 35 1 -1.7306 -8.4142 -0.5115 36 1 -1.5658 -9.9889 1.4036 37 1 -0.3290 -9.3085 3.4202 38 1 0.5932 -5.6229 1.7507 39 1 -1.4193 -3.9675 0.9199 40 1 -0.2058 -1.8439 1.1540 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058380658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:32 Heat of formation + Delta-G solvation = -3.382677 kcal Electronic energy + Delta-G solvation = -24422.799645 eV Core-core repulsion = 20782.241765 eV Total energy + Delta-G solvation = -3640.557879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.29120 -41.22323 -40.08089 -38.39800 -36.80766 -34.77417 -33.48617 -32.48546 -32.00062 -31.25456 -29.96387 -27.67886 -25.84267 -24.73100 -24.39907 -23.84483 -23.07082 -20.72206 -19.95220 -19.16936 -18.39823 -18.27909 -17.68169 -17.62269 -17.03503 -16.38501 -16.12878 -16.07419 -15.54444 -15.28919 -15.16782 -14.95939 -14.65127 -14.47620 -14.14516 -14.10506 -13.76977 -13.72769 -13.62153 -13.40623 -13.12849 -13.08408 -12.80543 -12.44803 -12.09599 -12.01912 -11.77003 -10.94948 -10.84955 -10.76435 -10.58224 -10.18980 -9.90965 -9.56680 -9.47337 -8.35997 -6.42168 -0.44017 0.07579 0.16482 0.24808 1.32775 1.37146 1.45374 1.54802 1.95518 2.20145 2.29944 2.64022 2.77271 2.98285 3.47360 3.50407 3.64845 3.71852 3.74395 3.93827 4.04608 4.08625 4.22527 4.26861 4.34685 4.55852 4.58500 4.64678 4.73676 4.82206 4.87842 4.91777 4.94981 5.01374 5.10603 5.11223 5.23582 5.38447 5.41809 5.52665 5.65689 6.19583 6.31012 6.53701 6.59345 6.93450 7.13330 7.27000 8.80780 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.035179 B = 0.002593 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.732191 B =10795.192125 C =10946.450040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.596 5.596 3 C 0.221 3.779 4 C -0.540 4.540 5 H 0.028 0.972 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.235 1.235 12 C 0.541 3.459 13 O -0.589 6.589 14 C -0.131 4.131 15 C -0.064 4.064 16 C -0.121 4.121 17 C 0.092 3.908 18 O -0.254 6.254 19 C 0.057 3.943 20 C -0.103 4.103 21 C -0.121 4.121 22 C 0.056 3.944 23 N -0.483 5.483 24 C 0.015 3.985 25 C -0.128 4.128 26 C -0.068 4.068 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.269 0.731 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.183 0.817 37 H 0.185 0.815 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.264 -24.062 10.473 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.099 3.901 4 C -0.579 4.579 5 H 0.046 0.954 6 C -0.187 4.187 7 N -0.584 5.584 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.158 1.158 12 C 0.330 3.670 13 O -0.471 6.471 14 C -0.134 4.134 15 C -0.083 4.083 16 C -0.139 4.139 17 C 0.050 3.950 18 O -0.165 6.165 19 C 0.013 3.987 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.102 4.102 23 N -0.193 5.193 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.087 4.087 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.184 0.816 36 H 0.200 0.800 37 H 0.202 0.798 38 H 0.166 0.834 39 H 0.180 0.820 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.260 -23.662 10.996 29.734 hybrid contribution 0.554 0.893 -0.988 1.442 sum -13.706 -22.769 10.007 28.398 Atomic orbital electron populations 1.22388 0.77610 1.04275 1.03247 1.47843 1.08569 1.05707 1.70432 1.19437 0.93028 0.82029 0.95585 1.21531 1.37144 1.06962 0.92251 0.95366 1.25863 0.95174 0.98910 0.98719 1.70046 1.42494 1.24488 1.21328 0.85702 0.79617 0.77727 0.79842 1.20231 1.19935 1.15817 1.18824 0.86803 0.84783 0.76540 1.90723 1.16108 1.87984 1.52275 1.20032 0.97342 0.93872 1.02139 1.21097 0.99310 0.91639 0.96296 1.21254 0.93004 0.98156 1.01454 1.18922 0.91893 0.85402 0.98782 1.84318 1.66907 1.25372 1.39899 1.20417 0.98869 0.91260 0.88203 1.21366 0.99829 0.89927 1.01826 1.22463 0.98027 1.01503 0.92056 1.23335 0.94655 0.92805 0.99406 1.67576 1.18312 1.04210 1.29168 1.22974 1.00881 1.00520 0.89835 1.21559 1.01595 0.92390 0.99075 1.21653 0.91550 0.98029 0.97419 0.88992 0.91074 0.89452 0.92430 0.95932 0.92176 0.85549 0.82817 0.81619 0.79965 0.79824 0.83407 0.81965 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 8.90 127.77 1.14 3.01 16 2 N -0.60 -24.44 2.86 -854.86 -2.44 -26.88 16 3 C 0.22 10.78 4.27 85.63 0.37 11.14 16 4 C -0.54 -31.89 9.94 25.60 0.25 -31.64 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.69 5.47 84.66 0.46 1.15 16 7 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 8 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 9 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 12 C 0.54 22.95 7.32 86.71 0.63 23.59 16 13 O -0.59 -30.61 16.48 -3.98 -0.07 -30.67 16 14 C -0.13 -4.14 5.22 -20.08 -0.10 -4.25 16 15 C -0.06 -1.91 9.64 22.50 0.22 -1.69 16 16 C -0.12 -2.83 9.97 22.33 0.22 -2.61 16 17 C 0.09 1.98 4.55 22.64 0.10 2.08 16 18 O -0.25 -5.12 9.98 -33.66 -0.34 -5.46 16 19 C 0.06 1.06 6.65 22.61 0.15 1.21 16 20 C -0.10 -1.31 10.13 22.56 0.23 -1.08 16 21 C -0.12 -1.12 10.11 22.34 0.23 -0.90 16 22 C 0.06 0.75 11.18 84.69 0.95 1.69 16 23 N -0.48 -10.12 10.36 -195.41 -2.02 -12.14 16 24 C 0.01 0.31 10.14 84.81 0.86 1.17 16 25 C -0.13 -2.46 8.70 22.33 0.19 -2.27 16 26 C -0.07 -1.55 7.46 22.50 0.17 -1.38 16 27 H 0.09 1.84 7.22 -2.39 -0.02 1.83 16 28 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 29 H 0.09 2.15 5.45 -2.38 -0.01 2.13 16 30 H 0.06 2.52 7.13 -2.39 -0.02 2.50 16 31 H 0.02 1.18 6.77 -2.39 -0.02 1.17 16 32 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 33 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 37 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.15 3.30 6.18 -2.91 -0.02 3.28 16 39 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.17 2.96 5.54 -2.91 -0.02 2.95 16 Total: -1.00 -81.69 342.59 4.40 -77.29 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.01 Total: 11.90 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 6.07 Total: -0.76 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -4.17 Total: -98.45 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.40 Total: -36.13 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -81.69 4.40 -77.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058380658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.911 kcal (2) G-P(sol) polarization free energy of solvation -81.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds