Wall clock time and date at job start Fri Apr 10 2020 18:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46986 * 2 1 4 4 C 1.36680 * 125.99839 * 275.47214 * 3 2 1 5 5 S 1.76205 * 126.00703 * 0.02562 * 4 3 2 6 6 C 1.81401 * 102.99834 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47079 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47230 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00031 * 359.97438 * 8 7 6 10 10 C 1.37885 * 120.00237 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99501 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00084 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47151 * 59.99381 * 12 10 8 14 14 H 1.48502 * 109.46932 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46764 * 299.99776 * 12 10 8 16 16 N 1.31084 * 107.98190 * 179.88801 * 4 3 2 17 17 N 1.40104 * 107.99049 * 0.37226 * 16 4 3 18 18 C 1.31028 * 108.00628 * 359.76393 * 17 16 4 19 19 N 1.38895 * 125.98734 * 180.02562 * 18 17 16 20 20 C 1.47014 * 111.00043 * 96.11244 * 19 18 17 21 21 C 1.53100 * 109.25735 * 177.60579 * 20 19 18 22 22 O 1.43018 * 109.25718 * 56.84543 * 21 20 19 23 23 C 1.43014 * 113.73804 * 301.32938 * 22 21 20 24 24 C 1.47010 * 110.99889 * 332.47114 * 19 18 17 25 25 H 1.08993 * 109.47794 * 306.93553 * 1 2 3 26 26 H 1.09005 * 109.47049 * 186.93474 * 1 2 3 27 27 H 1.08999 * 109.47010 * 66.94134 * 1 2 3 28 28 H 1.09010 * 109.46996 * 119.99340 * 2 1 3 29 29 H 1.08996 * 109.47902 * 239.99811 * 2 1 3 30 30 H 1.09004 * 109.47140 * 300.00042 * 6 5 4 31 31 H 1.09001 * 109.47336 * 60.00486 * 6 5 4 32 32 H 1.09001 * 109.47667 * 299.99927 * 7 6 5 33 33 H 1.09009 * 109.47413 * 60.00224 * 7 6 5 34 34 H 0.97010 * 119.99747 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.50290 * 297.53825 * 20 19 18 36 36 H 1.08994 * 109.50794 * 57.66549 * 20 19 18 37 37 H 1.08999 * 109.50747 * 296.90991 * 21 20 19 38 38 H 1.08997 * 109.53813 * 176.79792 * 21 20 19 39 39 H 1.09004 * 109.50716 * 298.73359 * 23 22 21 40 40 H 1.09007 * 109.53884 * 178.62861 * 23 22 21 41 41 H 1.08993 * 109.51076 * 302.32345 * 24 19 18 42 42 H 1.08996 * 109.50658 * 62.46298 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1866 2.1738 -1.1007 5 16 1.8539 1.7140 -2.7689 6 6 2.2893 3.2095 -3.6988 7 6 2.0516 2.9693 -5.1910 8 6 2.4139 4.2115 -5.9637 9 1 2.7769 5.0850 -5.4425 10 6 2.2809 4.2332 -7.3359 11 7 1.8384 3.1697 -7.9705 12 14 2.7293 5.7730 -8.2935 13 1 4.1603 6.0980 -8.0665 14 1 2.4987 5.5399 -9.7419 15 1 1.8856 6.9052 -7.8334 16 7 2.6363 3.3370 -0.6969 17 7 2.7686 3.2895 0.6970 18 6 2.3909 2.1012 1.0995 19 7 2.3721 1.6525 2.4139 20 6 1.0343 1.8058 3.0039 21 6 1.0436 1.2456 4.4287 22 8 2.0518 1.9138 5.1917 23 6 3.3673 1.7845 4.6459 24 6 3.3816 2.3502 3.2233 25 1 -0.3634 0.6175 0.8213 26 1 -0.3633 -1.0202 0.1241 27 1 -0.3633 0.4025 -0.9456 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.6695 4.0403 -3.3617 31 1 3.3396 3.4484 -3.5317 32 1 2.6711 2.1384 -5.5286 33 1 1.0011 2.7307 -5.3579 34 1 1.7452 3.1848 -8.9360 35 1 0.7670 2.8622 3.0299 36 1 0.3068 1.2603 2.4030 37 1 1.2582 0.1774 4.3983 38 1 0.0698 1.4082 4.8906 39 1 3.6496 0.7319 4.6219 40 1 4.0747 2.3370 5.2644 41 1 4.3675 2.2020 2.7827 42 1 3.1518 3.4153 3.2528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069534544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:44 Heat of formation + Delta-G solvation = 38.617371 kcal Electronic energy + Delta-G solvation = -23544.377148 eV Core-core repulsion = 20073.377230 eV Total energy + Delta-G solvation = -3470.999918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04291 -39.81111 -36.15436 -35.24793 -33.77075 -31.71860 -31.00555 -30.45271 -30.25604 -27.29649 -25.30098 -24.63395 -23.94439 -22.66679 -21.91082 -21.00859 -20.19277 -17.94857 -16.99903 -16.68291 -16.56515 -16.30912 -15.93708 -15.62061 -15.13109 -14.92634 -14.60313 -14.52693 -14.35286 -13.81780 -13.68661 -13.07029 -13.01129 -12.46803 -12.23519 -12.06033 -11.88125 -11.83101 -11.65352 -11.28693 -11.07278 -11.06218 -10.92611 -10.69467 -10.53303 -10.29800 -10.11203 -10.00269 -9.83322 -9.74524 -9.23065 -9.10340 -8.46385 -7.42458 -6.11148 -4.15350 1.22944 1.77361 2.28011 2.43598 2.73795 3.29809 3.30860 3.34636 3.38481 3.42400 4.25477 4.39235 4.39945 4.43796 4.59196 4.66953 4.75018 4.82997 4.84124 4.95992 5.05391 5.15854 5.24872 5.25254 5.30350 5.32666 5.41766 5.49853 5.58117 5.84604 5.94340 5.96987 6.11893 6.15550 6.18470 6.61962 6.63951 7.02059 7.43754 7.50000 7.84509 8.05933 8.20299 8.88857 9.49028 10.99718 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.030039 B = 0.002658 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.912607 B =10531.705711 C =11168.564071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.478 5.478 4 C 0.221 3.779 5 S -0.036 6.036 6 C -0.071 4.071 7 C 0.038 3.962 8 C -0.519 4.519 9 H 0.061 0.939 10 C 0.061 3.939 11 N -0.892 5.892 12 Si 0.899 3.101 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 N -0.315 5.315 17 N -0.338 5.338 18 C 0.384 3.616 19 N -0.459 5.459 20 C 0.019 3.981 21 C 0.068 3.932 22 O -0.382 6.382 23 C 0.065 3.935 24 C 0.032 3.968 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 -10.050 24.203 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.180 5.180 4 C -0.160 4.160 5 S 0.194 5.806 6 C -0.220 4.220 7 C -0.001 4.001 8 C -0.560 4.560 9 H 0.079 0.921 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.727 3.273 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.200 1.200 16 N -0.150 5.150 17 N -0.173 5.173 18 C 0.020 3.980 19 N -0.185 5.185 20 C -0.109 4.109 21 C -0.009 4.009 22 O -0.300 6.300 23 C -0.012 4.012 24 C -0.096 4.096 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.880 -9.956 23.841 25.905 hybrid contribution 0.124 1.194 -0.386 1.261 sum -1.757 -8.762 23.455 25.100 Atomic orbital electron populations 1.22221 0.94009 1.03193 1.03533 1.21899 0.95798 0.79318 1.05169 1.46212 1.53947 1.14164 1.03652 1.26804 1.02019 0.91320 0.95808 1.85583 1.82277 1.26446 0.86323 1.24093 1.04729 0.93244 0.99902 1.18968 0.98379 0.98447 0.84349 1.21006 1.44892 0.98491 0.91567 0.92101 1.24997 0.94947 0.96537 0.97673 1.69951 1.45666 1.28530 1.08901 0.86534 0.79157 0.83017 0.78629 1.20041 1.21168 1.20045 1.78316 1.20785 1.15432 1.00455 1.78041 1.23029 1.13068 1.03137 1.22130 1.00282 0.88217 0.87363 1.58962 1.07338 1.55690 0.96476 1.23048 0.88749 1.02091 0.96991 1.22678 0.92725 0.96525 0.89011 1.88022 1.16399 1.75265 1.50321 1.22752 0.84885 1.01262 0.92284 1.22805 0.95410 0.98048 0.93322 0.92364 0.90170 0.90882 0.88216 0.88431 0.89721 0.89706 0.95300 0.95311 0.92648 0.92227 0.89032 0.91820 0.87661 0.91933 0.87504 0.88785 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.10 1.00 6.55 -4.04 -0.03 0.97 16 3 N -0.48 -6.73 2.77 -117.46 -0.33 -7.05 16 4 C 0.22 3.85 8.10 -88.37 -0.72 3.13 16 5 S -0.04 -0.62 21.60 -107.50 -2.32 -2.94 16 6 C -0.07 -1.50 5.52 37.15 0.20 -1.30 16 7 C 0.04 0.95 4.98 -27.89 -0.14 0.81 16 8 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 9 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 12 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 N -0.31 -6.27 12.29 30.67 0.38 -5.90 16 17 N -0.34 -6.10 11.94 30.38 0.36 -5.73 16 18 C 0.38 5.56 6.83 -318.43 -2.17 3.38 16 19 N -0.46 -4.94 4.57 -174.11 -0.80 -5.73 16 20 C 0.02 0.17 5.59 -3.71 -0.02 0.14 16 21 C 0.07 0.46 7.01 37.21 0.26 0.72 16 22 O -0.38 -3.37 10.83 -35.23 -0.38 -3.75 16 23 C 0.07 0.48 7.01 37.21 0.26 0.74 16 24 C 0.03 0.31 5.22 -3.71 -0.02 0.29 16 25 H 0.06 0.48 6.01 -51.93 -0.31 0.17 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 0.80 7.98 -51.92 -0.41 0.39 16 29 H 0.10 0.94 7.90 -51.93 -0.41 0.53 16 30 H 0.08 1.81 8.14 -51.92 -0.42 1.39 16 31 H 0.08 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.72 6.00 -51.93 -0.31 0.41 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -32.60 359.34 -10.83 -43.43 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -6.48 Total: -3.61 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.40 Total: -5.18 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.35 Total: -49.66 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.38 Total: -3.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.32 Total: -2.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.60 -10.83 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069534544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.046 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds