Wall clock time and date at job start Fri Apr 10 2020 18:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47278 * 2 1 4 4 C 1.53004 * 109.47405 * 120.00009 * 2 1 3 5 5 N 1.46496 * 109.47088 * 65.00165 * 4 2 1 6 6 C 1.37271 * 127.17596 * 84.45862 * 5 4 2 7 7 S 1.76192 * 126.44599 * 359.97438 * 6 5 4 8 8 C 1.76196 * 100.00029 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.38546 * 120.00336 * 179.72428 * 8 7 6 11 11 N 1.31726 * 119.99331 * 0.27796 * 10 8 7 12 12 Si 1.86800 * 120.00245 * 180.27722 * 10 8 7 13 13 H 1.48498 * 109.46891 * 90.00009 * 12 10 8 14 14 H 1.48500 * 109.46941 * 209.99918 * 12 10 8 15 15 H 1.48505 * 109.46844 * 330.00176 * 12 10 8 16 16 N 1.31213 * 107.10464 * 180.26350 * 6 5 4 17 17 N 1.28516 * 109.98675 * 359.56049 * 16 6 5 18 18 C 1.31244 * 110.05632 * 0.45287 * 17 16 6 19 19 N 1.38537 * 126.40085 * 179.72839 * 18 17 16 20 20 C 1.47021 * 111.00077 * 99.01788 * 19 18 17 21 21 C 1.53097 * 109.26028 * 177.60957 * 20 19 18 22 22 O 1.43017 * 109.25942 * 56.84607 * 21 20 19 23 23 C 1.43015 * 113.73870 * 301.33328 * 22 21 20 24 24 C 1.47013 * 111.00274 * 335.38538 * 19 18 17 25 25 H 1.09004 * 109.47332 * 299.99946 * 1 2 3 26 26 H 1.08991 * 109.47519 * 60.00118 * 1 2 3 27 27 H 1.09006 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47332 * 240.00054 * 2 1 3 29 29 H 1.08997 * 109.47385 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47199 * 300.00145 * 3 2 1 31 31 H 1.09004 * 109.46895 * 59.99786 * 3 2 1 32 32 H 1.08997 * 109.47010 * 305.00228 * 4 2 1 33 33 H 1.09002 * 109.47189 * 185.00273 * 4 2 1 34 34 H 0.97001 * 119.99109 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.50580 * 297.54303 * 20 19 18 36 36 H 1.08997 * 109.50768 * 57.67253 * 20 19 18 37 37 H 1.09002 * 109.50354 * 296.91524 * 21 20 19 38 38 H 1.08992 * 109.54216 * 176.80595 * 21 20 19 39 39 H 1.09003 * 109.50563 * 298.73304 * 23 22 21 40 40 H 1.09000 * 109.54107 * 178.62706 * 23 22 21 41 41 H 1.09002 * 109.50301 * 302.32739 * 24 19 18 42 42 H 1.08999 * 109.50626 * 62.45362 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 2.3161 -3.1492 0.5495 7 16 3.8119 -3.0059 -0.3706 8 6 4.0261 -4.6822 -0.8692 9 1 3.3053 -5.4301 -0.5731 10 6 5.1158 -5.0400 -1.6464 11 7 5.9947 -4.1278 -2.0079 12 14 5.3388 -6.8158 -2.1815 13 1 4.6553 -7.0302 -3.4823 14 1 6.7868 -7.1103 -2.3287 15 1 4.7513 -7.7183 -1.1589 16 7 1.6235 -4.2463 0.7456 17 7 0.5895 -3.9904 1.4646 18 6 0.5539 -2.7129 1.7632 19 7 -0.4153 -2.0716 2.5173 20 6 0.0349 -1.8840 3.9043 21 6 -1.0385 -1.1210 4.6849 22 8 -2.2748 -1.8359 4.6089 23 6 -2.7430 -2.0359 3.2725 24 6 -1.6869 -2.8083 2.4776 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 6.7578 -4.3784 -2.5517 35 1 0.1999 -2.8566 4.3681 36 1 0.9642 -1.3144 3.9115 37 1 -1.1653 -0.1280 4.2536 38 1 -0.7348 -1.0288 5.7276 39 1 -2.9194 -1.0695 2.8002 40 1 -3.6719 -2.6058 3.2931 41 1 -2.0144 -2.9133 1.4433 42 1 -1.5494 -3.7956 2.9186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071801985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:47 Heat of formation + Delta-G solvation = 31.566779 kcal Electronic energy + Delta-G solvation = -24715.219005 eV Core-core repulsion = 21243.913350 eV Total energy + Delta-G solvation = -3471.305655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.14198 -39.54907 -36.72307 -35.77481 -32.87742 -32.59679 -31.39103 -29.60429 -27.17760 -27.03803 -26.23793 -25.56735 -24.29052 -22.01520 -21.57184 -20.22350 -20.09291 -17.97525 -17.50254 -16.42977 -16.06181 -15.80123 -15.52731 -15.22696 -14.92004 -14.80398 -14.69591 -14.64297 -14.05323 -13.64476 -13.04242 -12.95784 -12.59753 -12.31968 -12.06380 -11.72093 -11.56649 -11.46619 -11.33672 -11.14695 -11.09337 -10.99113 -10.94385 -10.68292 -10.57617 -10.33637 -10.13956 -9.89952 -9.66925 -9.48224 -9.11461 -8.83070 -8.38162 -6.71869 -6.45948 -4.19786 2.27647 2.35298 3.09653 3.19861 3.24365 3.33984 3.51311 3.62855 3.88046 4.02246 4.62264 4.71929 4.77721 4.84278 4.90752 4.97883 4.99148 5.05465 5.09463 5.13729 5.23446 5.33734 5.41742 5.48812 5.56106 5.67005 5.68313 5.71062 5.73513 5.86497 5.94409 5.97469 6.09395 6.14130 6.32624 6.39326 6.52472 6.73359 6.87617 6.90350 7.57827 7.63762 8.38269 9.06518 9.45007 10.62348 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.004254 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.705735 B = 6580.389343 C = 7654.044101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.123 3.877 5 N -0.466 5.466 6 C 0.175 3.825 7 S 0.134 5.866 8 C -0.530 4.530 9 H 0.104 0.896 10 C 0.075 3.925 11 N -0.880 5.880 12 Si 0.931 3.069 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.266 1.266 16 N -0.300 5.300 17 N -0.312 5.312 18 C 0.311 3.689 19 N -0.447 5.447 20 C 0.020 3.980 21 C 0.069 3.931 22 O -0.384 6.384 23 C 0.065 3.935 24 C 0.036 3.964 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.273 0.727 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 12.051 8.904 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.199 4.199 4 C -0.001 4.001 5 N -0.164 5.164 6 C -0.197 4.197 7 S 0.365 5.635 8 C -0.679 4.679 9 H 0.122 0.878 10 C -0.133 4.133 11 N -0.515 5.515 12 Si 0.756 3.244 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.191 1.191 16 N -0.145 5.145 17 N -0.157 5.157 18 C -0.048 4.048 19 N -0.173 5.173 20 C -0.108 4.108 21 C -0.009 4.009 22 O -0.302 6.302 23 C -0.012 4.012 24 C -0.092 4.092 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.109 11.962 8.461 18.387 hybrid contribution 0.153 -1.312 -0.022 1.321 sum -10.956 10.651 8.440 17.455 Atomic orbital electron populations 1.21733 0.94360 1.02181 1.01127 1.21472 0.96946 0.96446 0.98406 1.21741 1.01408 0.94855 1.01886 1.21846 1.01322 0.77307 0.99608 1.46042 1.20026 1.08950 1.41427 1.28250 1.03962 0.85571 1.01929 1.83410 1.09831 1.16182 1.54030 1.23166 1.13715 0.93133 1.37867 0.87819 1.25037 0.94213 0.99633 0.94465 1.69988 1.12509 1.33761 1.35252 0.85941 0.77374 0.81748 0.79293 1.19957 1.20700 1.19062 1.74594 1.01886 1.21370 1.16670 1.74316 1.16620 1.09701 1.15054 1.22087 0.90746 0.88723 1.03270 1.58823 1.01233 1.47231 1.09988 1.22934 0.99300 1.01373 0.87183 1.22649 0.83216 0.94538 1.00454 1.87991 1.38575 1.76798 1.26881 1.22740 0.96271 0.99882 0.82285 1.22678 0.87462 0.96565 1.02452 0.92603 0.93083 0.92542 0.89740 0.92113 0.92144 0.92725 0.89340 0.89014 0.91716 0.92662 0.89738 0.92101 0.88090 0.92185 0.87922 0.89100 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.96 37.15 0.33 -1.37 16 2 C -0.11 -1.47 3.13 -90.62 -0.28 -1.76 16 3 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 4 C 0.12 1.73 5.40 -4.04 -0.02 1.70 16 5 N -0.47 -8.58 2.54 -117.26 -0.30 -8.88 16 6 C 0.17 4.01 8.07 -87.71 -0.71 3.30 16 7 S 0.13 3.30 21.54 -107.50 -2.32 0.98 16 8 C -0.53 -14.84 9.37 30.85 0.29 -14.55 16 9 H 0.10 3.02 6.92 -52.48 -0.36 2.66 16 10 C 0.08 2.05 5.49 -17.48 -0.10 1.96 16 11 N -0.88 -24.46 13.22 55.48 0.73 -23.73 16 12 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 N -0.30 -7.53 11.02 30.81 0.34 -7.19 16 17 N -0.31 -6.94 11.43 30.38 0.35 -6.60 16 18 C 0.31 5.68 5.65 -318.43 -1.80 3.88 16 19 N -0.45 -6.23 4.67 -174.10 -0.81 -7.04 16 20 C 0.02 0.24 5.56 -3.71 -0.02 0.22 16 21 C 0.07 0.65 7.01 37.21 0.26 0.91 16 22 O -0.38 -4.31 10.83 -35.23 -0.38 -4.69 16 23 C 0.07 0.65 7.01 37.21 0.26 0.91 16 24 C 0.04 0.46 5.19 -3.71 -0.02 0.45 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.86 6.75 -51.93 -0.35 0.51 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.04 7.19 -51.93 -0.37 0.67 16 33 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 34 H 0.27 7.09 8.32 -40.82 -0.34 6.75 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.95 7.24 -51.93 -0.38 0.57 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -31.99 356.27 -10.01 -42.00 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.50 Total: -1.14 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.46 Total: -5.44 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.31 Total: -53.45 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.38 Total: -4.69 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.32 Total: 0.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.99 -10.01 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071801985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.569 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds