Wall clock time and date at job start Fri Apr 10 2020 18:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47278 * 2 1 4 4 C 1.53004 * 109.47405 * 120.00009 * 2 1 3 5 5 N 1.46496 * 109.47088 * 65.00165 * 4 2 1 6 6 C 1.37271 * 127.17596 * 84.45862 * 5 4 2 7 7 S 1.76192 * 126.44599 * 359.97438 * 6 5 4 8 8 C 1.76196 * 100.00029 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.38546 * 120.00336 * 179.72428 * 8 7 6 11 11 N 1.31726 * 119.99331 * 0.27796 * 10 8 7 12 12 Si 1.86800 * 120.00245 * 180.27722 * 10 8 7 13 13 H 1.48498 * 109.46891 * 90.00009 * 12 10 8 14 14 H 1.48500 * 109.46941 * 209.99918 * 12 10 8 15 15 H 1.48505 * 109.46844 * 330.00176 * 12 10 8 16 16 N 1.31213 * 107.10464 * 180.26350 * 6 5 4 17 17 N 1.28516 * 109.98675 * 359.56049 * 16 6 5 18 18 C 1.31244 * 110.05632 * 0.45287 * 17 16 6 19 19 N 1.38537 * 126.40085 * 179.72839 * 18 17 16 20 20 C 1.47021 * 111.00077 * 99.01788 * 19 18 17 21 21 C 1.53097 * 109.26028 * 177.60957 * 20 19 18 22 22 O 1.43017 * 109.25942 * 56.84607 * 21 20 19 23 23 C 1.43015 * 113.73870 * 301.33328 * 22 21 20 24 24 C 1.47013 * 111.00274 * 335.38538 * 19 18 17 25 25 H 1.09004 * 109.47332 * 299.99946 * 1 2 3 26 26 H 1.08991 * 109.47519 * 60.00118 * 1 2 3 27 27 H 1.09006 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47332 * 240.00054 * 2 1 3 29 29 H 1.08997 * 109.47385 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47199 * 300.00145 * 3 2 1 31 31 H 1.09004 * 109.46895 * 59.99786 * 3 2 1 32 32 H 1.08997 * 109.47010 * 305.00228 * 4 2 1 33 33 H 1.09002 * 109.47189 * 185.00273 * 4 2 1 34 34 H 0.97001 * 119.99109 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.50580 * 297.54303 * 20 19 18 36 36 H 1.08997 * 109.50768 * 57.67253 * 20 19 18 37 37 H 1.09002 * 109.50354 * 296.91524 * 21 20 19 38 38 H 1.08992 * 109.54216 * 176.80595 * 21 20 19 39 39 H 1.09003 * 109.50563 * 298.73304 * 23 22 21 40 40 H 1.09000 * 109.54107 * 178.62706 * 23 22 21 41 41 H 1.09002 * 109.50301 * 302.32739 * 24 19 18 42 42 H 1.08999 * 109.50626 * 62.45362 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 2.3161 -3.1492 0.5495 7 16 3.8119 -3.0059 -0.3706 8 6 4.0261 -4.6822 -0.8692 9 1 3.3053 -5.4301 -0.5731 10 6 5.1158 -5.0400 -1.6464 11 7 5.9947 -4.1278 -2.0079 12 14 5.3388 -6.8158 -2.1815 13 1 4.6553 -7.0302 -3.4823 14 1 6.7868 -7.1103 -2.3287 15 1 4.7513 -7.7183 -1.1589 16 7 1.6235 -4.2463 0.7456 17 7 0.5895 -3.9904 1.4646 18 6 0.5539 -2.7129 1.7632 19 7 -0.4153 -2.0716 2.5173 20 6 0.0349 -1.8840 3.9043 21 6 -1.0385 -1.1210 4.6849 22 8 -2.2748 -1.8359 4.6089 23 6 -2.7430 -2.0359 3.2725 24 6 -1.6869 -2.8083 2.4776 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 6.7578 -4.3784 -2.5517 35 1 0.1999 -2.8566 4.3681 36 1 0.9642 -1.3144 3.9115 37 1 -1.1653 -0.1280 4.2536 38 1 -0.7348 -1.0288 5.7276 39 1 -2.9194 -1.0695 2.8002 40 1 -3.6719 -2.6058 3.2931 41 1 -2.0144 -2.9133 1.4433 42 1 -1.5494 -3.7956 2.9186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071801985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:46 Heat of formation + Delta-G solvation = 11.952941 kcal Electronic energy + Delta-G solvation = -24716.069524 eV Core-core repulsion = 21243.913350 eV Total energy + Delta-G solvation = -3472.156175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.75653 -40.53856 -37.93311 -36.85032 -34.75458 -34.18139 -32.29897 -31.09685 -28.44198 -28.01305 -27.70697 -27.30820 -25.25897 -23.57255 -22.81917 -21.38281 -21.28272 -19.84856 -18.82280 -17.55500 -17.40885 -17.15470 -16.95553 -16.86596 -16.12624 -15.93250 -15.84818 -15.70226 -15.21714 -14.87659 -14.82254 -14.02362 -13.48668 -13.46048 -13.21228 -13.02929 -13.01018 -12.93412 -12.69767 -12.59379 -12.45802 -12.33178 -12.06212 -12.02204 -11.85257 -11.73585 -11.61736 -11.46279 -11.08699 -10.93385 -10.81755 -10.64731 -9.84325 -8.64104 -8.52427 -6.29829 0.65566 0.72242 1.35412 1.37888 1.49878 1.58141 1.79971 2.12329 2.59422 2.88093 2.88944 3.02398 3.57225 3.71361 3.76692 3.80935 3.95178 4.06766 4.11914 4.18542 4.22406 4.28499 4.38505 4.46327 4.55760 4.66008 4.67827 4.76277 4.82768 4.86850 4.94974 4.95401 4.98824 5.10574 5.21123 5.30252 5.39927 5.44677 5.46780 5.53697 6.11439 6.19112 6.21470 6.95859 7.75349 8.56863 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.004254 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.705735 B = 6580.389343 C = 7654.044101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.113 3.887 5 N -0.456 5.456 6 C 0.161 3.839 7 S 0.125 5.875 8 C -0.559 4.559 9 H 0.082 0.918 10 C 0.035 3.965 11 N -0.903 5.903 12 Si 0.991 3.009 13 H -0.266 1.266 14 H -0.264 1.264 15 H -0.273 1.273 16 N -0.342 5.342 17 N -0.355 5.355 18 C 0.343 3.657 19 N -0.435 5.435 20 C 0.018 3.982 21 C 0.074 3.926 22 O -0.398 6.398 23 C 0.075 3.925 24 C 0.034 3.966 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.022 0.978 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.280 0.720 35 H 0.033 0.967 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 14.366 10.198 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.130 4.130 3 C -0.191 4.191 4 C -0.008 4.008 5 N -0.153 5.153 6 C -0.214 4.214 7 S 0.355 5.645 8 C -0.708 4.708 9 H 0.100 0.900 10 C -0.172 4.172 11 N -0.539 5.539 12 Si 0.813 3.187 13 H -0.191 1.191 14 H -0.188 1.188 15 H -0.198 1.198 16 N -0.186 5.186 17 N -0.199 5.199 18 C -0.017 4.017 19 N -0.161 5.161 20 C -0.110 4.110 21 C -0.003 4.003 22 O -0.316 6.316 23 C -0.002 4.002 24 C -0.093 4.093 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.326 14.313 9.776 21.269 hybrid contribution 0.377 -1.922 -0.312 1.983 sum -11.949 12.391 9.464 19.644 Atomic orbital electron populations 1.21666 0.93634 1.00438 1.02815 1.21453 0.97460 0.97967 0.96125 1.21699 1.01339 0.92529 1.03556 1.22301 1.01835 0.74967 1.01743 1.46246 1.19256 1.09908 1.39857 1.27881 1.03876 0.86662 1.02980 1.83008 1.11458 1.14528 1.55479 1.23276 1.13996 0.94490 1.39009 0.90011 1.25842 0.93620 1.03598 0.94101 1.70036 1.12894 1.35436 1.35555 0.85051 0.78135 0.76735 0.78737 1.19110 1.18824 1.19809 1.74475 1.03129 1.23222 1.17781 1.74232 1.16783 1.12132 1.16752 1.22582 0.90195 0.87861 1.01094 1.59119 1.00376 1.45742 1.10868 1.23111 1.01305 1.01045 0.85521 1.22812 0.81440 0.94508 1.01504 1.87991 1.39148 1.77144 1.27324 1.22797 0.95457 1.00534 0.81404 1.22786 0.87755 0.96209 1.02592 0.90287 0.92018 0.95845 0.93301 0.92260 0.91316 0.90188 0.85945 0.89023 0.91041 0.94832 0.88515 0.89917 0.85668 0.90303 0.85937 0.89900 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.96 71.98 0.65 -2.29 16 2 C -0.11 -2.73 3.13 -10.80 -0.03 -2.77 16 3 C -0.13 -2.31 9.19 71.98 0.66 -1.65 16 4 C 0.11 3.02 5.40 86.38 0.47 3.49 16 5 N -0.46 -16.90 2.54 -524.89 -1.33 -18.23 16 6 C 0.16 7.69 8.07 179.33 1.45 9.13 16 7 S 0.12 6.41 21.54 -56.49 -1.22 5.19 16 8 C -0.56 -32.65 9.37 67.89 0.64 -32.01 16 9 H 0.08 5.03 6.92 -2.91 -0.02 5.01 16 10 C 0.03 1.93 5.49 84.78 0.47 2.40 16 11 N -0.90 -50.95 13.22 21.61 0.29 -50.67 16 12 Si 0.99 44.53 29.55 68.60 2.03 46.55 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 16 N -0.34 -18.02 11.02 -56.44 -0.62 -18.64 16 17 N -0.35 -16.40 11.43 -57.80 -0.66 -17.06 16 18 C 0.34 12.57 5.65 259.96 1.47 14.04 16 19 N -0.43 -11.48 4.67 -704.74 -3.29 -14.77 16 20 C 0.02 0.38 5.56 86.31 0.48 0.86 16 21 C 0.07 1.10 7.01 72.01 0.50 1.61 16 22 O -0.40 -7.59 10.83 -148.98 -1.61 -9.21 16 23 C 0.07 1.26 7.01 72.01 0.50 1.77 16 24 C 0.03 0.85 5.19 86.31 0.45 1.30 16 25 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.02 0.68 6.75 -2.38 -0.02 0.66 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.12 2.44 7.19 -2.39 -0.02 2.43 16 33 H 0.09 2.50 8.05 -2.39 -0.02 2.48 16 34 H 0.28 14.59 8.32 -92.71 -0.77 13.82 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 1.86 7.24 -2.39 -0.02 1.84 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.04 1.22 7.97 -2.39 -0.02 1.21 16 Total: -1.00 -73.46 356.27 2.28 -71.18 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.01 Total: 9.79 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 7.69 Total: -4.13 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -5.62 Total: -119.38 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.61 Total: -9.21 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -1.22 Total: 5.19 kcal Total: -73.46 2.28 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071801985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.132 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds