Wall clock time and date at job start Fri Apr 10 2020 18:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35779 * 119.37589 * 2 1 4 4 C 1.39449 * 120.13764 * 179.70224 * 3 2 1 5 5 C 1.39404 * 118.95710 * 0.27314 * 4 3 2 6 6 C 1.46971 * 120.59252 * 179.97438 * 5 4 3 7 7 O 1.21684 * 119.99781 * 302.48389 * 6 5 4 8 8 N 1.34769 * 120.00016 * 122.47959 * 6 5 4 9 9 C 1.36881 * 120.00328 * 183.50408 * 8 6 5 10 10 H 1.08005 * 120.00547 * 237.04008 * 9 8 6 11 11 C 1.39023 * 120.00039 * 57.03758 * 9 8 6 12 12 N 1.31384 * 119.99818 * 35.55787 * 11 9 8 13 13 Si 1.86798 * 120.00143 * 215.55379 * 11 9 8 14 14 H 1.48507 * 109.47138 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47005 * 119.99795 * 13 11 9 16 16 H 1.48500 * 109.47433 * 240.00134 * 13 11 9 17 17 C 1.46504 * 120.00010 * 3.50486 * 8 6 5 18 18 C 1.50699 * 109.47303 * 160.48839 * 17 8 6 19 19 C 1.38238 * 119.99734 * 263.31700 * 18 17 8 20 20 C 1.38237 * 119.99726 * 179.76485 * 19 18 17 21 21 C 1.38229 * 120.00278 * 0.50741 * 20 19 18 22 22 C 1.38237 * 119.99866 * 359.74641 * 21 20 19 23 23 C 1.38229 * 120.00409 * 83.58925 * 18 17 8 24 24 C 1.41961 * 118.81501 * 0.02562 * 5 4 3 25 25 O 1.21887 * 120.10497 * 179.97438 * 24 5 4 26 26 N 1.34649 * 119.78748 * 359.97438 * 24 5 4 27 27 H 0.96999 * 119.47172 * 179.97438 * 26 24 5 28 28 H 1.08994 * 109.47124 * 90.00389 * 1 2 3 29 29 H 1.09003 * 109.46619 * 209.99786 * 1 2 3 30 30 H 1.08996 * 109.47224 * 330.00079 * 1 2 3 31 31 H 1.08005 * 119.92554 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.51927 * 180.30065 * 4 3 2 33 33 H 0.96998 * 119.99852 * 184.93600 * 12 11 9 34 34 H 1.09001 * 109.47409 * 280.48539 * 17 8 6 35 35 H 1.09004 * 109.47062 * 40.48564 * 17 8 6 36 36 H 1.07995 * 120.00122 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.99600 * 180.22548 * 20 19 18 38 38 H 1.07995 * 120.00356 * 179.72861 * 21 20 19 39 39 H 1.07997 * 120.00159 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.99705 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1832 0.0000 4 6 3.5674 1.2018 0.0063 5 6 4.2585 -0.0089 0.0067 6 6 5.7281 -0.0313 0.0126 7 8 6.3486 0.5271 -0.8727 8 7 6.3883 -0.6702 0.9986 9 6 7.7557 -0.6307 1.0442 10 1 8.3231 -1.5497 1.0402 11 6 8.4144 0.5925 1.0955 12 7 7.8895 1.5937 1.7650 13 14 10.0458 0.8126 0.2126 14 1 10.4179 -0.4562 -0.4636 15 1 9.9198 1.8931 -0.7982 16 1 11.0965 1.1759 1.1972 17 6 5.6423 -1.4072 2.0218 18 6 6.5580 -2.3956 2.6967 19 6 6.5792 -3.7138 2.2807 20 6 7.4226 -4.6194 2.8966 21 6 8.2372 -4.2094 3.9354 22 6 8.2122 -2.8924 4.3548 23 6 7.3726 -1.9856 3.7355 24 6 3.5175 -1.2198 0.0001 25 8 4.0978 -2.2917 -0.0002 26 7 2.1716 -1.1803 -0.0058 27 1 1.6699 -2.0105 -0.0106 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6217 2.1119 -0.0004 32 1 4.1034 2.1393 0.0112 33 1 8.3116 2.4668 1.7421 34 1 5.2535 -0.7081 2.7621 35 1 4.8139 -1.9397 1.5545 36 1 5.9392 -4.0353 1.4724 37 1 7.4418 -5.6484 2.5692 38 1 8.8930 -4.9179 4.4194 39 1 8.8484 -2.5721 5.1667 40 1 7.3531 -0.9566 4.0631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075122879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:02 Heat of formation + Delta-G solvation = 8.824681 kcal Electronic energy + Delta-G solvation = -26054.453330 eV Core-core repulsion = 22414.424801 eV Total energy + Delta-G solvation = -3640.028529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13069 -38.78609 -37.72598 -37.00805 -34.35520 -33.32005 -31.97919 -31.58087 -30.22373 -30.13217 -27.73688 -25.70074 -24.27293 -23.45527 -22.53121 -21.78574 -20.56733 -20.04978 -17.94742 -17.29358 -16.49349 -15.94488 -15.78196 -15.74577 -15.21122 -14.79984 -14.42083 -14.35856 -14.15550 -13.76561 -13.59068 -13.31083 -13.17156 -12.67788 -12.48829 -12.22813 -12.09087 -11.96601 -11.80055 -11.63143 -11.30306 -10.96934 -10.83573 -10.52659 -10.29397 -10.19752 -10.07124 -10.01296 -9.60128 -8.54578 -8.27294 -8.14833 -7.90714 -7.63728 -7.06277 -6.15226 -3.85439 0.85913 2.02064 2.09558 2.17200 2.94741 3.38755 3.51717 3.58505 3.69499 4.17697 4.33225 4.42486 4.57657 4.76817 4.93120 5.11211 5.17609 5.26473 5.38729 5.46597 5.54074 5.54781 5.59743 5.69433 5.85616 5.89863 6.19931 6.22593 6.31714 6.36949 6.49710 6.51299 6.62878 6.74753 6.83399 6.89008 7.06873 7.16544 7.22119 7.56537 7.73921 7.76716 8.24906 8.44077 9.11134 9.16938 9.63535 10.27795 10.84576 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011843 B = 0.006020 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.763695 B = 4649.823767 C = 6338.868500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.152 3.848 3 C -0.223 4.223 4 C 0.017 3.983 5 C -0.224 4.224 6 C 0.546 3.454 7 O -0.559 6.559 8 N -0.419 5.419 9 C -0.340 4.340 10 H 0.077 0.923 11 C 0.092 3.908 12 N -0.836 5.836 13 Si 0.890 3.110 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.289 1.289 17 C 0.110 3.890 18 C -0.049 4.049 19 C -0.107 4.107 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.075 4.075 24 C 0.522 3.478 25 O -0.526 6.526 26 N -0.602 5.602 27 H 0.410 0.590 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.263 0.737 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.372 -3.738 2.461 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.042 3.958 3 C -0.247 4.247 4 C -0.006 4.006 5 C -0.231 4.231 6 C 0.333 3.667 7 O -0.441 6.441 8 N -0.139 5.139 9 C -0.466 4.466 10 H 0.094 0.906 11 C -0.118 4.118 12 N -0.469 5.469 13 Si 0.716 3.284 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.216 1.216 17 C -0.012 4.012 18 C -0.050 4.050 19 C -0.125 4.125 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.094 4.094 24 C 0.324 3.676 25 O -0.408 6.408 26 N -0.234 5.234 27 H 0.248 0.752 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.502 -3.838 2.160 15.156 hybrid contribution 0.576 0.145 -0.371 0.700 sum -13.927 -3.692 1.789 14.518 Atomic orbital electron populations 1.21053 0.88356 1.04610 1.04004 1.20513 0.94628 0.86066 0.94604 1.20378 0.94216 0.96695 1.13378 1.21836 0.93201 0.98340 0.87207 1.21611 0.97198 0.92300 1.12040 1.17225 0.83857 0.82822 0.82784 1.90638 1.67896 1.47992 1.37577 1.43032 1.05501 1.45260 1.20092 1.18682 0.79575 0.92769 1.55574 0.90574 1.25236 0.98168 0.96116 0.92312 1.70165 1.42295 1.02558 1.31900 0.86545 0.82628 0.78950 0.80248 1.19227 1.20459 1.21620 1.21240 0.94967 0.93026 0.91944 1.19729 0.97015 0.93568 0.94662 1.21059 0.99130 0.93232 0.99114 1.20938 0.97884 0.98976 0.97514 1.20933 0.99910 0.96048 0.98235 1.21019 0.99797 0.93602 1.00686 1.21069 0.94299 0.99015 0.94998 1.17088 0.80358 0.90912 0.79287 1.90864 1.67133 1.31258 1.51553 1.43537 1.08864 1.08854 1.62147 0.75234 0.89483 0.90620 0.89009 0.83725 0.84245 0.92700 0.94174 0.88943 0.86427 0.87168 0.87287 0.87029 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.06 36.01 0.36 -0.26 16 2 C 0.15 1.54 6.80 -81.87 -0.56 0.98 16 3 C -0.22 -2.63 9.58 -40.01 -0.38 -3.02 16 4 C 0.02 0.28 9.90 -38.70 -0.38 -0.10 16 5 C -0.22 -4.74 5.04 -104.50 -0.53 -5.26 16 6 C 0.55 14.76 6.58 -12.73 -0.08 14.68 16 7 O -0.56 -17.10 16.39 5.20 0.09 -17.02 16 8 N -0.42 -11.33 2.82 -117.47 -0.33 -11.66 16 9 C -0.34 -9.87 6.86 -15.01 -0.10 -9.97 16 10 H 0.08 2.29 7.59 -52.48 -0.40 1.89 16 11 C 0.09 2.67 4.30 -17.45 -0.08 2.60 16 12 N -0.84 -24.36 13.81 55.50 0.77 -23.59 16 13 Si 0.89 23.15 29.67 -169.99 -5.04 18.11 16 14 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 C 0.11 2.56 5.42 -5.19 -0.03 2.53 16 18 C -0.05 -1.08 3.99 -104.63 -0.42 -1.50 16 19 C -0.11 -2.15 9.68 -39.58 -0.38 -2.53 16 20 C -0.14 -2.38 10.05 -39.59 -0.40 -2.78 16 21 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 22 C -0.13 -2.43 10.05 -39.58 -0.40 -2.82 16 23 C -0.08 -1.58 8.87 -39.59 -0.35 -1.93 16 24 C 0.52 9.71 6.68 -14.89 -0.10 9.61 16 25 O -0.53 -11.30 14.59 5.02 0.07 -11.23 16 26 N -0.60 -7.52 5.22 -10.87 -0.06 -7.58 16 27 H 0.41 3.85 8.75 -40.82 -0.36 3.49 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.35 8.06 -51.93 -0.42 -0.07 16 31 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.04 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.09 2.06 3.43 -52.75 -0.18 1.88 16 36 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.12 2.70 8.06 -52.48 -0.42 2.27 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -37.28 344.66 -8.25 -45.53 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.72 Total: 4.67 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.22 Total: -2.43 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.38 Total: -42.83 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: 0.16 Total: -28.25 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.04 Total: 18.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.28 -8.25 -45.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075122879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.357 kcal (2) G-P(sol) polarization free energy of solvation -37.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds