Wall clock time and date at job start Fri Apr 10 2020 18:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99877 * 2 1 4 4 C 1.53002 * 109.46995 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46829 * 65.00460 * 4 3 2 6 6 C 1.46506 * 120.00096 * 269.99615 * 5 4 3 7 7 C 1.50696 * 109.47033 * 269.99999 * 6 5 4 8 8 H 1.08000 * 120.00443 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99873 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99841 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00010 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47194 * 60.00052 * 11 9 7 13 13 H 1.48504 * 109.47047 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47160 * 299.99982 * 11 9 7 15 15 C 1.34783 * 119.99993 * 90.00149 * 5 4 3 16 16 O 1.21279 * 119.99774 * 359.97438 * 15 5 4 17 17 C 1.50705 * 119.99679 * 179.97438 * 15 5 4 18 18 N 1.46500 * 109.46576 * 179.97438 * 17 15 5 19 19 C 1.34784 * 126.58671 * 125.00421 * 18 17 15 20 20 C 1.36668 * 106.83741 * 180.23977 * 19 18 17 21 21 C 1.47378 * 125.78024 * 179.73707 * 20 19 18 22 22 O 1.21518 * 120.00371 * 359.97438 * 21 20 19 23 23 O 1.34755 * 119.99812 * 179.97438 * 21 20 19 24 24 N 1.34445 * 108.43336 * 359.59971 * 20 19 18 25 25 N 1.28756 * 109.51685 * 0.40680 * 24 20 19 26 26 H 1.09001 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47289 * 299.99337 * 1 2 3 28 28 H 1.09003 * 109.47276 * 59.99920 * 1 2 3 29 29 H 1.09000 * 109.46733 * 60.00259 * 3 2 1 30 30 H 1.08996 * 109.47472 * 299.99961 * 3 2 1 31 31 H 1.08999 * 109.47207 * 305.00621 * 4 3 2 32 32 H 1.09003 * 109.47214 * 185.00272 * 4 3 2 33 33 H 1.09000 * 109.46857 * 30.00284 * 6 5 4 34 34 H 1.09000 * 109.46887 * 150.00455 * 6 5 4 35 35 H 0.97007 * 119.99786 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.47229 * 59.99942 * 17 15 5 37 37 H 1.08997 * 109.47055 * 299.99538 * 17 15 5 38 38 H 1.08002 * 126.57778 * 359.96682 * 19 18 17 39 39 H 0.96698 * 116.99714 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5017 -1.2980 -0.9415 8 1 6.2201 -0.5461 -0.6499 9 6 5.8611 -2.6291 -0.9476 10 7 4.9859 -3.5448 -1.3012 11 14 7.5906 -3.1319 -0.4524 12 1 7.8525 -2.6961 0.9429 13 1 7.7221 -4.6083 -0.5432 14 1 8.5725 -2.4910 -1.3636 15 6 4.2633 1.3331 -2.3200 16 8 4.1556 2.5389 -2.2460 17 6 4.7177 0.6947 -3.6073 18 7 4.9631 1.7357 -4.6085 19 6 6.1024 1.9308 -5.3018 20 6 5.8910 3.0085 -6.1154 21 6 6.8714 3.5868 -7.0516 22 8 7.9809 3.1003 -7.1468 23 8 6.5374 4.6551 -7.8019 24 7 4.6363 3.4497 -5.9191 25 7 4.0580 2.7202 -5.0296 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8507 0.5684 0.8426 32 1 3.9785 2.1766 0.0903 33 1 3.3858 -1.3631 -0.6715 34 1 3.9139 -1.2121 -2.3646 35 1 5.2389 -4.4813 -1.3058 36 1 3.9443 0.0176 -3.9698 37 1 5.6366 0.1357 -3.4311 38 1 7.0097 1.3500 -5.2256 39 1 7.2138 4.9994 -8.4011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090717310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:19 Heat of formation + Delta-G solvation = -65.599225 kcal Electronic energy + Delta-G solvation = -25930.892757 eV Core-core repulsion = 21876.787703 eV Total energy + Delta-G solvation = -4054.105054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.17255 -39.90184 -39.40445 -37.51400 -36.15223 -35.19551 -34.39893 -32.79252 -31.10992 -30.39245 -28.22637 -27.18791 -25.93855 -24.50515 -23.24881 -23.05297 -21.90891 -21.13969 -19.09886 -18.01549 -17.52572 -17.07802 -16.74459 -16.32718 -16.10326 -15.86552 -15.65124 -15.16324 -15.05195 -14.73595 -14.50028 -14.33297 -14.20361 -13.62740 -13.11364 -12.74720 -12.40043 -12.16344 -11.97714 -11.80928 -11.66325 -11.62915 -11.58279 -11.22579 -11.09048 -10.98101 -10.83531 -10.69333 -10.56960 -10.29394 -9.92437 -9.52161 -9.37792 -9.21533 -8.68185 -7.96318 -6.31420 -4.41361 1.08445 1.62370 1.99930 2.93428 2.97796 3.03697 3.14794 3.21825 3.23819 3.55637 4.05964 4.20921 4.29833 4.64627 4.77638 4.97545 5.02531 5.09261 5.27957 5.31766 5.41868 5.54548 5.55646 5.58543 5.60158 5.79642 5.84811 5.92468 6.22482 6.30191 6.32728 6.57478 7.05453 7.33722 7.39710 7.62865 7.74101 7.89013 8.06122 8.09754 8.53301 8.71874 9.27779 10.74698 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.004336 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.132168 B = 6456.195956 C = 8570.735132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.579 5.579 6 C 0.234 3.766 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.070 3.930 10 N -0.885 5.885 11 Si 0.896 3.104 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.505 3.495 16 O -0.551 6.551 17 C 0.102 3.898 18 N -0.336 5.336 19 C 0.110 3.890 20 C -0.105 4.105 21 C 0.582 3.418 22 O -0.517 6.517 23 O -0.498 6.498 24 N -0.195 5.195 25 N -0.027 5.027 26 H 0.083 0.917 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.268 0.732 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.209 0.791 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 7.313 -4.455 8.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.031 4.031 4 C 0.001 3.999 5 N -0.309 5.309 6 C 0.115 3.885 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.135 4.135 10 N -0.522 5.522 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.290 3.710 16 O -0.431 6.431 17 C -0.021 4.021 18 N -0.118 5.118 19 C -0.048 4.048 20 C -0.242 4.242 21 C 0.424 3.576 22 O -0.405 6.405 23 O -0.308 6.308 24 N -0.070 5.070 25 N -0.009 5.009 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.225 0.775 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.363 7.768 -3.973 9.351 hybrid contribution 2.125 -0.669 0.012 2.228 sum -1.238 7.099 -3.961 8.223 Atomic orbital electron populations 1.22688 0.81981 1.02456 0.99288 1.88037 1.18827 1.27356 1.95243 1.23009 0.94986 0.85034 1.00057 1.21382 0.91292 0.99664 0.87577 1.48108 1.62955 1.10028 1.09839 1.19600 0.97839 0.72332 0.98729 1.21468 0.97173 0.92581 1.47782 0.92068 1.24930 0.97624 0.96283 0.94638 1.69913 1.34428 1.01421 1.46430 0.86588 0.84078 0.77577 0.79427 1.20057 1.21058 1.20056 1.19988 0.78701 0.87082 0.85204 1.90721 1.54612 1.13976 1.83757 1.22119 1.07600 0.86621 0.85802 1.50168 1.09930 1.23702 1.28011 1.23344 0.92551 0.97052 0.91890 1.20026 0.94557 1.01951 1.07643 1.19093 0.84231 0.77069 0.77230 1.90931 1.21929 1.61267 1.66407 1.84656 1.48706 1.44617 1.52852 1.74790 1.04985 1.18867 1.08357 1.82187 1.12763 0.96863 1.09087 0.89808 0.94659 0.94547 0.93031 0.93182 0.89065 0.89325 0.92531 0.94924 0.92265 0.85213 0.83366 0.77450 0.72854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.26 9.53 -35.23 -0.34 -6.59 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.10 5.81 -4.04 -0.02 2.07 16 5 N -0.58 -10.91 2.42 -175.05 -0.42 -11.33 16 6 C 0.23 4.99 4.78 -5.19 -0.02 4.97 16 7 C -0.55 -12.90 9.28 -34.44 -0.32 -13.22 16 8 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.88 -22.69 13.29 55.43 0.74 -21.95 16 11 Si 0.90 19.10 29.54 -169.99 -5.02 14.08 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 C 0.51 9.38 7.71 -10.98 -0.08 9.30 16 16 O -0.55 -11.55 15.31 5.56 0.09 -11.46 16 17 C 0.10 1.59 5.57 -5.19 -0.03 1.56 16 18 N -0.34 -5.35 3.41 -62.23 -0.21 -5.56 16 19 C 0.11 1.52 11.27 -16.82 -0.19 1.33 16 20 C -0.11 -1.60 7.02 -83.57 -0.59 -2.19 16 21 C 0.58 7.84 8.33 34.45 0.29 8.13 16 22 O -0.52 -7.63 17.65 -19.28 -0.34 -7.97 16 23 O -0.50 -5.39 13.44 -40.64 -0.55 -5.93 16 24 N -0.19 -3.39 12.39 32.83 0.41 -2.98 16 25 N -0.03 -0.50 12.88 60.35 0.78 0.28 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 32 H 0.09 1.45 7.42 -51.93 -0.39 1.06 16 33 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 34 H 0.03 0.70 6.44 -51.93 -0.33 0.36 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.13 1.85 7.40 -51.93 -0.38 1.47 16 37 H 0.15 2.13 7.94 -51.93 -0.41 1.72 16 38 H 0.21 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.41 2.12 9.11 45.56 0.42 2.54 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -32.04 352.10 -3.26 -35.30 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.97 Total: 2.79 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 0.28 Total: 16.03 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 1.29 Total: -41.54 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.14 Total: -31.96 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.04 -3.26 -35.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090717310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.297 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds