Wall clock time and date at job start Fri Apr 10 2020 18:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99877 * 2 1 4 4 C 1.53002 * 109.46995 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46829 * 65.00460 * 4 3 2 6 6 C 1.46506 * 120.00096 * 269.99615 * 5 4 3 7 7 C 1.50696 * 109.47033 * 269.99999 * 6 5 4 8 8 H 1.08000 * 120.00443 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99873 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99841 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00010 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47194 * 60.00052 * 11 9 7 13 13 H 1.48504 * 109.47047 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47160 * 299.99982 * 11 9 7 15 15 C 1.34783 * 119.99993 * 90.00149 * 5 4 3 16 16 O 1.21279 * 119.99774 * 359.97438 * 15 5 4 17 17 C 1.50705 * 119.99679 * 179.97438 * 15 5 4 18 18 N 1.46500 * 109.46576 * 179.97438 * 17 15 5 19 19 C 1.34784 * 126.58671 * 125.00421 * 18 17 15 20 20 C 1.36668 * 106.83741 * 180.23977 * 19 18 17 21 21 C 1.47378 * 125.78024 * 179.73707 * 20 19 18 22 22 O 1.21518 * 120.00371 * 359.97438 * 21 20 19 23 23 O 1.34755 * 119.99812 * 179.97438 * 21 20 19 24 24 N 1.34445 * 108.43336 * 359.59971 * 20 19 18 25 25 N 1.28756 * 109.51685 * 0.40680 * 24 20 19 26 26 H 1.09001 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47289 * 299.99337 * 1 2 3 28 28 H 1.09003 * 109.47276 * 59.99920 * 1 2 3 29 29 H 1.09000 * 109.46733 * 60.00259 * 3 2 1 30 30 H 1.08996 * 109.47472 * 299.99961 * 3 2 1 31 31 H 1.08999 * 109.47207 * 305.00621 * 4 3 2 32 32 H 1.09003 * 109.47214 * 185.00272 * 4 3 2 33 33 H 1.09000 * 109.46857 * 30.00284 * 6 5 4 34 34 H 1.09000 * 109.46887 * 150.00455 * 6 5 4 35 35 H 0.97007 * 119.99786 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.47229 * 59.99942 * 17 15 5 37 37 H 1.08997 * 109.47055 * 299.99538 * 17 15 5 38 38 H 1.08002 * 126.57778 * 359.96682 * 19 18 17 39 39 H 0.96698 * 116.99714 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5017 -1.2980 -0.9415 8 1 6.2201 -0.5461 -0.6499 9 6 5.8611 -2.6291 -0.9476 10 7 4.9859 -3.5448 -1.3012 11 14 7.5906 -3.1319 -0.4524 12 1 7.8525 -2.6961 0.9429 13 1 7.7221 -4.6083 -0.5432 14 1 8.5725 -2.4910 -1.3636 15 6 4.2633 1.3331 -2.3200 16 8 4.1556 2.5389 -2.2460 17 6 4.7177 0.6947 -3.6073 18 7 4.9631 1.7357 -4.6085 19 6 6.1024 1.9308 -5.3018 20 6 5.8910 3.0085 -6.1154 21 6 6.8714 3.5868 -7.0516 22 8 7.9809 3.1003 -7.1468 23 8 6.5374 4.6551 -7.8019 24 7 4.6363 3.4497 -5.9191 25 7 4.0580 2.7202 -5.0296 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8507 0.5684 0.8426 32 1 3.9785 2.1766 0.0903 33 1 3.3858 -1.3631 -0.6715 34 1 3.9139 -1.2121 -2.3646 35 1 5.2389 -4.4813 -1.3058 36 1 3.9443 0.0176 -3.9698 37 1 5.6366 0.1357 -3.4311 38 1 7.0097 1.3500 -5.2256 39 1 7.2138 4.9994 -8.4011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090717310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:18 Heat of formation + Delta-G solvation = -89.340659 kcal Electronic energy + Delta-G solvation = -25931.922263 eV Core-core repulsion = 21876.787703 eV Total energy + Delta-G solvation = -4055.134560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.37393 -41.03822 -40.74930 -38.74705 -37.11783 -36.74293 -35.67569 -34.56772 -32.30111 -31.73029 -29.60191 -28.74599 -27.07808 -25.61163 -24.88338 -24.44325 -23.15360 -22.25876 -20.43346 -19.17805 -18.66528 -18.58207 -18.33995 -17.64460 -17.26559 -17.06301 -16.80982 -16.63901 -16.28054 -16.14100 -15.86966 -15.58935 -15.43857 -14.66101 -14.49296 -14.30515 -13.80357 -13.62158 -13.35287 -13.16597 -13.03401 -12.79572 -12.75316 -12.61006 -12.56296 -12.44339 -12.12377 -11.94195 -11.91073 -11.82291 -11.67595 -10.89879 -10.61650 -10.54077 -10.43515 -9.53568 -8.16247 -6.31404 -0.01822 0.41058 0.82806 1.47296 1.48709 1.53202 1.57257 1.92714 1.97603 2.15026 2.45337 2.92497 3.14666 3.17383 3.34425 3.67213 3.77333 4.03866 4.07240 4.14015 4.21414 4.37545 4.39787 4.53153 4.55401 4.60582 4.71757 4.85233 4.87823 4.97673 5.14324 5.35677 5.47212 5.64838 5.81423 6.08081 6.25875 6.50481 6.75499 6.80913 7.02047 7.12695 7.41718 8.88810 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.004336 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.132168 B = 6456.195956 C = 8570.735132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.054 3.946 4 C 0.119 3.881 5 N -0.581 5.581 6 C 0.252 3.748 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.030 3.970 10 N -0.915 5.915 11 Si 0.950 3.050 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.265 1.265 15 C 0.503 3.497 16 O -0.576 6.576 17 C 0.107 3.893 18 N -0.339 5.339 19 C 0.122 3.878 20 C -0.118 4.118 21 C 0.590 3.410 22 O -0.531 6.531 23 O -0.496 6.496 24 N -0.210 5.210 25 N -0.065 5.065 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.267 0.733 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.245 0.755 39 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 7.511 -4.696 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C -0.023 4.023 4 C -0.004 4.004 5 N -0.311 5.311 6 C 0.132 3.868 7 C -0.590 4.590 8 H 0.077 0.923 9 C -0.172 4.172 10 N -0.554 5.554 11 Si 0.776 3.224 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.190 1.190 15 C 0.289 3.711 16 O -0.457 6.457 17 C -0.016 4.016 18 N -0.122 5.122 19 C -0.035 4.035 20 C -0.255 4.255 21 C 0.433 3.567 22 O -0.420 6.420 23 O -0.310 6.310 24 N -0.085 5.085 25 N -0.046 5.046 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.182 0.818 38 H 0.261 0.739 39 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -2.380 8.004 -4.229 9.361 hybrid contribution 1.796 -0.666 0.074 1.917 sum -0.584 7.338 -4.155 8.453 Atomic orbital electron populations 1.22868 0.80032 1.03394 1.00543 1.87990 1.21081 1.28077 1.95477 1.22921 0.93694 0.84847 1.00844 1.21509 0.92717 0.99493 0.86675 1.48084 1.63103 1.09151 1.10764 1.19215 0.96191 0.73500 0.97927 1.21669 0.97836 0.92503 1.46982 0.92314 1.25548 1.00481 0.96404 0.94734 1.70006 1.35974 1.01601 1.47772 0.85726 0.80720 0.76978 0.78939 1.20358 1.21336 1.19000 1.20402 0.78038 0.86764 0.85866 1.90707 1.55677 1.15035 1.84286 1.22132 1.08627 0.86437 0.84392 1.50165 1.10355 1.23470 1.28176 1.23971 0.92713 0.96501 0.90340 1.20456 0.94273 1.02433 1.08307 1.18807 0.83490 0.77353 0.77061 1.90928 1.22245 1.61911 1.66965 1.84606 1.49905 1.43525 1.52918 1.74747 1.06098 1.19171 1.08436 1.82155 1.13981 0.98177 1.10279 0.89126 0.92543 0.94079 0.90190 0.94271 0.89573 0.88928 0.95053 0.94846 0.92371 0.84056 0.81801 0.73937 0.69968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -13.39 9.53 -148.98 -1.42 -14.80 16 3 C 0.05 1.63 6.28 71.98 0.45 2.08 16 4 C 0.12 3.98 5.81 86.38 0.50 4.49 16 5 N -0.58 -21.75 2.42 -826.13 -2.00 -23.74 16 6 C 0.25 10.70 4.78 85.63 0.41 11.11 16 7 C -0.55 -25.36 9.28 25.60 0.24 -25.12 16 8 H 0.06 2.70 7.81 -2.91 -0.02 2.68 16 9 C 0.03 1.42 5.46 84.66 0.46 1.88 16 10 N -0.92 -46.64 13.29 21.45 0.28 -46.36 16 11 Si 0.95 38.28 29.54 68.60 2.03 40.31 16 12 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 13 H -0.29 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 15 C 0.50 18.44 7.71 87.66 0.68 19.12 16 16 O -0.58 -24.03 15.31 -3.03 -0.05 -24.08 16 17 C 0.11 3.23 5.57 85.63 0.48 3.71 16 18 N -0.34 -10.43 3.41 -350.79 -1.20 -11.63 16 19 C 0.12 3.17 11.27 83.87 0.95 4.11 16 20 C -0.12 -3.41 7.02 40.78 0.29 -3.13 16 21 C 0.59 14.85 8.33 70.23 0.59 15.44 16 22 O -0.53 -14.54 17.65 19.78 0.35 -14.19 16 23 O -0.50 -9.75 13.44 -56.66 -0.76 -10.52 16 24 N -0.21 -7.21 12.39 -50.04 -0.62 -7.83 16 25 N -0.06 -2.35 12.88 37.02 0.48 -1.87 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 2.94 8.07 -2.39 -0.02 2.92 16 32 H 0.09 3.00 7.42 -2.39 -0.02 2.98 16 33 H 0.03 1.50 7.11 -2.39 -0.02 1.49 16 34 H 0.03 1.42 6.44 -2.39 -0.02 1.40 16 35 H 0.27 13.10 8.31 -92.70 -0.77 12.33 16 36 H 0.14 3.90 7.40 -2.39 -0.02 3.89 16 37 H 0.16 4.40 7.94 -2.39 -0.02 4.38 16 38 H 0.24 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.44 3.43 9.11 -74.06 -0.67 2.76 16 Total: -1.00 -67.71 352.10 3.80 -63.90 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.43 Total: 15.20 kcal Atomic # 6 Polarization: 29.32 SS G_CDS: 6.28 Total: 35.60 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.05 Total: -91.43 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -1.88 Total: -63.59 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -67.71 3.80 -63.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090717310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.438 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds