Wall clock time and date at job start Fri Apr 10 2020 18:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48505 * 109.46940 * 90.00238 * 3 2 1 5 5 H 1.48497 * 109.47123 * 210.00107 * 3 2 1 6 6 H 1.48501 * 109.47315 * 330.00253 * 3 2 1 7 7 C 1.37882 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99624 * 187.12829 * 7 2 1 9 9 C 1.50695 * 120.00219 * 7.11693 * 7 2 1 10 10 C 1.52996 * 115.55637 * 275.22229 * 9 7 2 11 11 O 1.45201 * 109.46659 * 301.70397 * 10 9 7 12 12 C 1.34743 * 116.99936 * 184.74666 * 11 10 9 13 13 O 1.21500 * 119.99742 * 359.97438 * 12 11 10 14 14 C 1.47535 * 120.00047 * 180.02562 * 12 11 10 15 15 C 1.41584 * 126.44676 * 179.71249 * 14 12 11 16 16 C 1.35329 * 105.55194 * 179.83923 * 15 14 12 17 17 N 1.35869 * 107.14325 * 0.41408 * 16 15 14 18 18 C 1.40109 * 124.95972 * 179.69834 * 17 16 15 19 19 C 1.38863 * 120.06483 * 359.72888 * 18 17 16 20 20 C 1.38112 * 119.92598 * 179.71974 * 19 18 17 21 21 C 1.38285 * 120.07323 * 0.57876 * 20 19 18 22 22 C 1.38281 * 120.13250 * 359.69322 * 21 20 19 23 23 C 1.38109 * 120.07155 * 0.02562 * 22 21 20 24 24 N 1.28477 * 110.08944 * 359.73053 * 17 16 15 25 25 C 1.53005 * 117.49620 * 129.54695 * 9 7 2 26 26 C 1.53009 * 117.49421 * 60.89043 * 9 7 2 27 27 H 0.96996 * 120.00711 * 175.39015 * 1 2 3 28 28 H 1.08995 * 109.47044 * 61.69961 * 10 9 7 29 29 H 1.09003 * 109.47133 * 181.70653 * 10 9 7 30 30 H 1.07998 * 127.21991 * 359.97438 * 15 14 12 31 31 H 1.08007 * 126.43076 * 180.11272 * 16 15 14 32 32 H 1.07995 * 120.03698 * 0.02562 * 19 18 17 33 33 H 1.08003 * 119.96419 * 180.29759 * 20 19 18 34 34 H 1.07991 * 119.93278 * 179.72275 * 21 20 19 35 35 H 1.08003 * 119.96261 * 180.02562 * 22 21 20 36 36 H 1.08008 * 120.03520 * 180.02562 * 23 22 21 37 37 H 1.09000 * 117.49744 * 0.02562 * 25 9 7 38 38 H 1.08992 * 117.50095 * 145.02575 * 25 9 7 39 39 H 1.09000 * 117.49624 * 214.97773 * 26 9 7 40 40 H 1.08996 * 117.49557 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4400 -0.7000 6 1 1.4468 2.6527 -0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0782 -1.1978 0.1155 9 6 1.2596 -2.4941 -0.1628 10 6 0.6775 -3.0861 1.1223 11 8 1.7459 -3.3074 2.0804 12 6 1.4154 -3.9188 3.2347 13 8 0.2659 -4.2573 3.4354 14 6 2.4492 -4.1762 4.2554 15 6 2.2541 -4.7999 5.5114 16 6 3.4731 -4.8216 6.0989 17 7 4.3431 -4.2318 5.2380 18 6 5.7117 -4.0510 5.4779 19 6 6.2717 -4.4843 6.6724 20 6 7.6222 -4.3098 6.9035 21 6 8.4141 -3.6937 5.9519 22 6 7.8582 -3.2561 4.7638 23 6 6.5095 -3.4329 4.5243 24 7 3.7278 -3.8635 4.1720 25 6 1.7682 -3.4720 -1.2240 26 6 0.4681 -2.6980 -1.4563 27 1 -0.4851 -0.8372 -0.0675 28 1 -0.0509 -2.3935 1.5439 29 1 0.1894 -4.0343 0.8969 30 1 1.3275 -5.1806 5.9149 31 1 3.7090 -5.2269 7.0718 32 1 5.6530 -4.9616 7.4178 33 1 8.0593 -4.6509 7.8303 34 1 9.4689 -3.5544 6.1368 35 1 8.4793 -2.7756 4.0223 36 1 6.0760 -3.0912 3.5959 37 1 2.6418 -3.1752 -1.8044 38 1 1.6878 -4.5370 -1.0068 39 1 -0.4671 -3.2542 -1.3917 40 1 0.4859 -1.8917 -2.1895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096442790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:33 Heat of formation + Delta-G solvation = 54.127344 kcal Electronic energy + Delta-G solvation = -24579.377429 eV Core-core repulsion = 20941.313371 eV Total energy + Delta-G solvation = -3638.064058 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.00535 -39.68691 -39.22153 -36.98466 -35.32876 -33.85460 -31.85823 -31.80344 -30.65781 -29.70469 -27.12150 -24.97124 -24.46896 -23.58940 -22.17284 -21.31861 -21.04050 -19.94203 -19.49834 -18.70009 -17.15193 -16.89701 -16.53243 -16.35457 -15.80004 -15.36634 -15.24461 -14.74185 -14.07511 -13.96337 -13.75094 -13.70777 -13.38036 -13.17484 -12.95321 -12.57075 -12.20858 -12.02195 -11.81361 -11.57054 -10.96260 -10.88187 -10.77746 -10.48375 -10.37004 -10.29965 -10.08927 -9.97159 -9.58259 -9.43405 -9.39235 -8.53978 -8.49455 -8.44741 -8.30663 -6.32461 -4.04643 0.46432 0.93991 1.69146 2.07507 2.15225 3.21124 3.35979 3.46253 3.49038 3.49519 3.65221 4.13516 4.38190 4.54214 4.57001 4.60102 4.76631 4.95246 5.00437 5.12883 5.21713 5.34425 5.37786 5.47068 5.59252 5.60050 5.81724 5.88814 5.94626 6.06990 6.09752 6.13607 6.23534 6.33012 6.35447 6.47949 6.58109 6.78269 6.82142 6.99826 7.20624 7.25890 7.73275 8.23452 8.36790 8.48925 8.90122 9.68329 11.06853 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.003716 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.409507 B = 7533.112797 C = 8750.626113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.561 4.561 8 H 0.057 0.943 9 C 0.015 3.985 10 C 0.110 3.890 11 O -0.312 6.312 12 C 0.544 3.456 13 O -0.512 6.512 14 C 0.017 3.983 15 C -0.165 4.165 16 C -0.022 4.022 17 N -0.237 5.237 18 C 0.137 3.863 19 C -0.129 4.129 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.097 4.097 23 C -0.106 4.106 24 N -0.223 5.223 25 C -0.190 4.190 26 C -0.168 4.168 27 H 0.273 0.727 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.171 0.829 31 H 0.187 0.813 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.262 -10.304 14.508 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.598 4.598 8 H 0.075 0.925 9 C 0.015 3.985 10 C 0.037 3.963 11 O -0.225 6.225 12 C 0.386 3.614 13 O -0.400 6.400 14 C -0.142 4.142 15 C -0.192 4.192 16 C -0.161 4.161 17 N -0.020 5.020 18 C 0.047 3.953 19 C -0.149 4.149 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.116 4.116 23 C -0.125 4.125 24 N -0.056 5.056 25 C -0.227 4.227 26 C -0.206 4.206 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.189 0.811 31 H 0.204 0.796 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.505 -8.223 13.860 21.682 hybrid contribution -0.649 -2.121 0.528 2.280 sum 13.856 -10.344 14.388 22.494 Atomic orbital electron populations 1.70727 1.06775 1.31365 1.45394 1.25812 0.96535 1.02359 0.93318 0.83531 0.74748 0.75060 0.76806 1.21507 1.21370 1.21010 1.21223 0.94571 0.89215 1.54824 0.92516 1.19042 0.99255 0.95887 0.84343 1.22973 0.87046 0.98004 0.88311 1.86707 1.41891 1.68577 1.25352 1.19586 0.85481 0.74945 0.81384 1.90812 1.19875 1.50213 1.79115 1.21101 0.90341 1.06656 0.96152 1.21820 0.98754 1.04836 0.93805 1.22995 0.89279 1.04724 0.99077 1.42905 1.06686 1.40527 1.11851 1.17705 0.79044 1.02142 0.96456 1.20841 0.96251 1.02397 0.95419 1.20980 0.92426 0.98713 0.99719 1.21320 1.00424 0.98377 0.93900 1.21162 0.94102 0.98750 0.97538 1.21171 0.93668 0.98037 0.99634 1.73862 1.07034 1.17317 1.07414 1.22910 0.97748 0.95590 1.06481 1.22796 0.93474 1.02303 1.01984 0.91625 0.91274 0.93781 0.81142 0.79579 0.84899 0.84837 0.85231 0.84624 0.83522 0.89748 0.91326 0.91223 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.13 13.57 55.43 0.75 -26.37 16 2 C 0.02 0.71 5.39 -17.82 -0.10 0.61 16 3 Si 1.07 25.56 29.91 -169.99 -5.08 20.47 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.56 -15.94 8.64 -34.44 -0.30 -16.24 16 8 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 9 C 0.02 0.39 1.20 -155.66 -0.19 0.20 16 10 C 0.11 2.71 5.31 37.16 0.20 2.90 16 11 O -0.31 -7.56 10.04 -40.61 -0.41 -7.97 16 12 C 0.54 11.80 7.96 34.52 0.27 12.08 16 13 O -0.51 -11.54 16.65 -19.27 -0.32 -11.86 16 14 C 0.02 0.31 7.16 -82.77 -0.59 -0.28 16 15 C -0.17 -2.31 10.80 -39.34 -0.42 -2.74 16 16 C -0.02 -0.26 10.78 -16.80 -0.18 -0.44 16 17 N -0.24 -3.34 3.52 -10.55 -0.04 -3.37 16 18 C 0.14 1.61 6.66 -83.61 -0.56 1.06 16 19 C -0.13 -1.07 9.43 -39.40 -0.37 -1.44 16 20 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16 21 C -0.12 -0.86 10.04 -39.55 -0.40 -1.25 16 22 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 23 C -0.11 -1.24 9.59 -39.40 -0.38 -1.62 16 24 N -0.22 -4.00 11.17 33.41 0.37 -3.63 16 25 C -0.19 -4.25 9.94 -26.69 -0.27 -4.52 16 26 C -0.17 -3.89 8.75 -26.69 -0.23 -4.13 16 27 H 0.27 8.05 6.15 -40.82 -0.25 7.80 16 28 H 0.07 1.82 7.76 -51.93 -0.40 1.41 16 29 H 0.04 1.00 8.01 -51.93 -0.42 0.58 16 30 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.19 1.21 6.96 -52.48 -0.37 0.85 16 32 H 0.13 0.77 6.65 -52.49 -0.35 0.42 16 33 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.15 1.98 7.65 -52.48 -0.40 1.58 16 37 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -34.38 353.71 -8.47 -42.85 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.77 Total: 2.66 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -4.31 Total: -18.12 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 1.09 Total: -33.38 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.73 Total: -19.83 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.38 -8.47 -42.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096442790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.982 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds