Wall clock time and date at job start Fri Apr 10 2020 18:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48505 * 109.46940 * 90.00238 * 3 2 1 5 5 H 1.48497 * 109.47123 * 210.00107 * 3 2 1 6 6 H 1.48501 * 109.47315 * 330.00253 * 3 2 1 7 7 C 1.37882 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99624 * 187.12829 * 7 2 1 9 9 C 1.50695 * 120.00219 * 7.11693 * 7 2 1 10 10 C 1.52996 * 115.55637 * 275.22229 * 9 7 2 11 11 O 1.45201 * 109.46659 * 301.70397 * 10 9 7 12 12 C 1.34743 * 116.99936 * 184.74666 * 11 10 9 13 13 O 1.21500 * 119.99742 * 359.97438 * 12 11 10 14 14 C 1.47535 * 120.00047 * 180.02562 * 12 11 10 15 15 C 1.41584 * 126.44676 * 179.71249 * 14 12 11 16 16 C 1.35329 * 105.55194 * 179.83923 * 15 14 12 17 17 N 1.35869 * 107.14325 * 0.41408 * 16 15 14 18 18 C 1.40109 * 124.95972 * 179.69834 * 17 16 15 19 19 C 1.38863 * 120.06483 * 359.72888 * 18 17 16 20 20 C 1.38112 * 119.92598 * 179.71974 * 19 18 17 21 21 C 1.38285 * 120.07323 * 0.57876 * 20 19 18 22 22 C 1.38281 * 120.13250 * 359.69322 * 21 20 19 23 23 C 1.38109 * 120.07155 * 0.02562 * 22 21 20 24 24 N 1.28477 * 110.08944 * 359.73053 * 17 16 15 25 25 C 1.53005 * 117.49620 * 129.54695 * 9 7 2 26 26 C 1.53009 * 117.49421 * 60.89043 * 9 7 2 27 27 H 0.96996 * 120.00711 * 175.39015 * 1 2 3 28 28 H 1.08995 * 109.47044 * 61.69961 * 10 9 7 29 29 H 1.09003 * 109.47133 * 181.70653 * 10 9 7 30 30 H 1.07998 * 127.21991 * 359.97438 * 15 14 12 31 31 H 1.08007 * 126.43076 * 180.11272 * 16 15 14 32 32 H 1.07995 * 120.03698 * 0.02562 * 19 18 17 33 33 H 1.08003 * 119.96419 * 180.29759 * 20 19 18 34 34 H 1.07991 * 119.93278 * 179.72275 * 21 20 19 35 35 H 1.08003 * 119.96261 * 180.02562 * 22 21 20 36 36 H 1.08008 * 120.03520 * 180.02562 * 23 22 21 37 37 H 1.09000 * 117.49744 * 0.02562 * 25 9 7 38 38 H 1.08992 * 117.50095 * 145.02575 * 25 9 7 39 39 H 1.09000 * 117.49624 * 214.97773 * 26 9 7 40 40 H 1.08996 * 117.49557 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4400 -0.7000 6 1 1.4468 2.6527 -0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0782 -1.1978 0.1155 9 6 1.2596 -2.4941 -0.1628 10 6 0.6775 -3.0861 1.1223 11 8 1.7459 -3.3074 2.0804 12 6 1.4154 -3.9188 3.2347 13 8 0.2659 -4.2573 3.4354 14 6 2.4492 -4.1762 4.2554 15 6 2.2541 -4.7999 5.5114 16 6 3.4731 -4.8216 6.0989 17 7 4.3431 -4.2318 5.2380 18 6 5.7117 -4.0510 5.4779 19 6 6.2717 -4.4843 6.6724 20 6 7.6222 -4.3098 6.9035 21 6 8.4141 -3.6937 5.9519 22 6 7.8582 -3.2561 4.7638 23 6 6.5095 -3.4329 4.5243 24 7 3.7278 -3.8635 4.1720 25 6 1.7682 -3.4720 -1.2240 26 6 0.4681 -2.6980 -1.4563 27 1 -0.4851 -0.8372 -0.0675 28 1 -0.0509 -2.3935 1.5439 29 1 0.1894 -4.0343 0.8969 30 1 1.3275 -5.1806 5.9149 31 1 3.7090 -5.2269 7.0718 32 1 5.6530 -4.9616 7.4178 33 1 8.0593 -4.6509 7.8303 34 1 9.4689 -3.5544 6.1368 35 1 8.4793 -2.7756 4.0223 36 1 6.0760 -3.0912 3.5959 37 1 2.6418 -3.1752 -1.8044 38 1 1.6878 -4.5370 -1.0068 39 1 -0.4671 -3.2542 -1.3917 40 1 0.4859 -1.8917 -2.1895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096442790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:32 Heat of formation + Delta-G solvation = 35.007008 kcal Electronic energy + Delta-G solvation = -24580.206549 eV Core-core repulsion = 20941.313371 eV Total energy + Delta-G solvation = -3638.893178 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.09845 -41.34527 -40.02592 -38.88303 -37.16158 -34.80590 -34.02351 -32.63967 -31.55417 -30.68273 -28.87481 -27.02580 -25.89028 -24.38928 -23.29961 -23.04492 -21.95680 -21.54137 -21.32888 -19.62721 -18.88222 -18.65268 -17.72948 -17.58665 -17.12269 -16.93807 -16.01584 -15.94879 -15.66956 -15.40934 -15.03269 -14.79789 -14.64949 -14.55781 -14.20498 -14.05835 -13.83318 -13.75987 -12.93077 -12.71689 -12.63811 -12.32355 -12.31610 -12.07050 -11.96205 -11.92662 -11.86127 -11.51038 -11.35837 -10.57357 -10.49226 -10.47737 -10.40955 -10.06192 -9.38656 -8.60063 -6.32232 -0.41905 0.29426 0.37013 1.10443 1.19180 1.49673 1.57957 1.71001 1.76625 1.93148 2.54531 2.73801 3.03287 3.16130 3.21700 3.64347 3.70594 3.88598 3.90827 3.98364 4.14038 4.18687 4.22010 4.36831 4.38691 4.38778 4.46980 4.49784 4.56807 4.66646 4.75099 4.92676 4.99276 5.07012 5.12868 5.22160 5.34642 5.36207 5.40245 5.47594 5.66758 5.97811 6.10134 6.18605 6.45246 6.65272 6.76699 7.47227 8.80510 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.003716 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.409507 B = 7533.112797 C = 8750.626113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.020 4.020 3 Si 1.111 2.889 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.573 4.573 8 H 0.039 0.961 9 C -0.023 4.023 10 C 0.121 3.879 11 O -0.334 6.334 12 C 0.540 3.460 13 O -0.530 6.530 14 C -0.025 4.025 15 C -0.173 4.173 16 C 0.005 3.995 17 N -0.229 5.229 18 C 0.097 3.903 19 C -0.117 4.117 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.106 4.106 23 C -0.135 4.135 24 N -0.265 5.265 25 C -0.168 4.168 26 C -0.158 4.158 27 H 0.264 0.736 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.190 0.810 31 H 0.246 0.754 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.929 -11.665 17.433 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.219 4.219 3 Si 0.934 3.066 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.610 4.610 8 H 0.057 0.943 9 C -0.024 4.024 10 C 0.047 3.953 11 O -0.248 6.248 12 C 0.384 3.616 13 O -0.419 6.419 14 C -0.181 4.181 15 C -0.200 4.200 16 C -0.133 4.133 17 N -0.012 5.012 18 C 0.008 3.992 19 C -0.137 4.137 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.155 4.155 24 N -0.101 5.101 25 C -0.205 4.205 26 C -0.195 4.195 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.207 0.793 31 H 0.262 0.738 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.180 0.820 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.179 -9.604 16.775 25.860 hybrid contribution -1.252 -1.766 -0.250 2.179 sum 15.927 -11.371 16.525 25.613 Atomic orbital electron populations 1.70826 1.07480 1.30941 1.47332 1.27097 0.96670 1.05647 0.92528 0.83012 0.74479 0.71827 0.77307 1.20898 1.19564 1.20256 1.21434 0.93978 0.91062 1.54561 0.94295 1.19125 1.01403 0.96206 0.85627 1.22689 0.86678 0.97891 0.88052 1.86709 1.41996 1.69537 1.26557 1.20176 0.86384 0.73968 0.81065 1.90766 1.20759 1.51042 1.79344 1.20967 0.90220 1.09802 0.97139 1.22140 1.00806 1.04875 0.92167 1.23836 0.87457 1.02069 0.99986 1.43214 1.07801 1.39165 1.11057 1.18156 0.78010 1.04739 0.98344 1.21279 0.97355 1.00957 0.94141 1.21518 0.91611 0.97098 1.00811 1.21772 1.02114 0.96350 0.92594 1.21371 0.92899 0.99100 0.99071 1.21118 0.95370 0.99947 0.99065 1.73768 1.07245 1.19086 1.09989 1.22936 0.97309 0.96334 1.03958 1.22745 0.94817 1.02105 0.99863 0.92534 0.94222 0.92112 0.79300 0.73788 0.81608 0.80807 0.81970 0.83551 0.87130 0.89618 0.88868 0.89074 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.57 21.45 0.29 -57.00 16 2 C -0.02 -1.16 5.39 84.66 0.46 -0.71 16 3 Si 1.11 52.54 29.91 68.60 2.05 54.59 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.57 -33.84 8.64 25.60 0.22 -33.62 16 8 H 0.04 2.37 7.82 -2.91 -0.02 2.34 16 9 C -0.02 -1.22 1.20 -52.93 -0.06 -1.28 16 10 C 0.12 6.21 5.31 71.98 0.38 6.59 16 11 O -0.33 -17.19 10.04 -56.53 -0.57 -17.76 16 12 C 0.54 24.82 7.96 70.27 0.56 25.38 16 13 O -0.53 -25.02 16.65 19.84 0.33 -24.69 16 14 C -0.02 -0.95 7.16 42.41 0.30 -0.64 16 15 C -0.17 -4.71 10.80 22.42 0.24 -4.47 16 16 C 0.01 0.10 10.78 83.40 0.90 1.00 16 17 N -0.23 -6.33 3.52 -187.30 -0.66 -6.99 16 18 C 0.10 2.17 6.66 38.12 0.25 2.43 16 19 C -0.12 -1.47 9.43 22.39 0.21 -1.26 16 20 C -0.09 -0.77 10.04 22.25 0.22 -0.55 16 21 C -0.11 -1.12 10.04 22.29 0.22 -0.90 16 22 C -0.11 -1.75 10.04 22.25 0.22 -1.53 16 23 C -0.14 -3.30 9.59 22.39 0.21 -3.08 16 24 N -0.26 -10.00 11.17 -48.21 -0.54 -10.54 16 25 C -0.17 -7.54 9.94 30.62 0.30 -7.23 16 26 C -0.16 -7.39 8.75 30.62 0.27 -7.12 16 27 H 0.26 16.24 6.15 -92.71 -0.57 15.67 16 28 H 0.04 2.22 7.76 -2.39 -0.02 2.20 16 29 H 0.06 2.84 8.01 -2.39 -0.02 2.82 16 30 H 0.19 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.25 1.75 6.96 -2.91 -0.02 1.73 16 32 H 0.17 0.88 6.65 -2.91 -0.02 0.86 16 33 H 0.17 0.15 8.06 -2.91 -0.02 0.12 16 34 H 0.16 0.62 8.06 -2.92 -0.02 0.60 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.11 3.40 7.65 -2.91 -0.02 3.37 16 37 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 38 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 40 H 0.08 3.75 8.14 -2.39 -0.02 3.73 16 Total: -1.00 -81.21 353.71 7.09 -74.12 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.26 Total: 15.25 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 4.92 Total: -26.99 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -0.91 Total: -74.53 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.24 Total: -42.45 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 2.05 Total: 54.59 kcal Total: -81.21 7.09 -74.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096442790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.130 kcal (2) G-P(sol) polarization free energy of solvation -81.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds