Wall clock time and date at job start Fri Apr 10 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 120.00016 * 2 1 4 4 H 1.48509 * 109.47060 * 239.99972 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47095 * 120.00206 * 3 2 1 7 7 C 1.37879 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00028 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47333 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99765 * 270.00282 * 10 9 7 12 12 C 1.50701 * 109.46789 * 269.99951 * 11 10 9 13 13 C 1.38674 * 120.41572 * 269.71991 * 12 11 10 14 14 C 1.38636 * 118.41718 * 179.78598 * 13 12 11 15 15 C 1.38225 * 119.16144 * 0.51431 * 14 13 12 16 16 N 1.31853 * 120.76210 * 359.72328 * 15 14 13 17 17 C 1.31890 * 121.72945 * 0.02562 * 16 15 14 18 18 C 1.34774 * 120.00481 * 90.00084 * 10 9 7 19 19 O 1.21771 * 120.00346 * 180.02562 * 18 10 9 20 20 C 1.41555 * 119.99391 * 359.97438 * 18 10 9 21 21 C 1.35623 * 119.99798 * 186.44764 * 20 18 10 22 22 C 1.41615 * 119.99814 * 10.02014 * 21 20 18 23 23 C 1.37956 * 126.09897 * 218.73200 * 22 21 20 24 24 C 1.40317 * 106.52577 * 179.72464 * 23 22 21 25 25 C 1.35159 * 107.20347 * 0.40735 * 24 23 22 26 26 O 1.34019 * 109.03647 * 359.58323 * 25 24 23 27 27 H 0.97003 * 120.00539 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46684 * 59.99955 * 9 7 2 29 29 H 1.08996 * 109.47113 * 300.00210 * 9 7 2 30 30 H 1.09003 * 109.47323 * 29.99679 * 11 10 9 31 31 H 1.08997 * 109.47356 * 150.00103 * 11 10 9 32 32 H 1.08001 * 120.79280 * 0.02562 * 13 12 11 33 33 H 1.07999 * 120.41463 * 180.22280 * 14 13 12 34 34 H 1.07995 * 119.61759 * 179.75250 * 15 14 13 35 35 H 1.08000 * 119.61463 * 180.02562 * 17 16 15 36 36 H 1.08003 * 120.00520 * 6.45301 * 20 18 10 37 37 H 1.08005 * 120.00367 * 190.01640 * 21 20 18 38 38 H 1.07999 * 126.73709 * 0.02562 * 23 22 21 39 39 H 1.08001 * 126.39710 * 180.28441 * 24 23 22 40 40 H 1.08000 * 125.47853 * 179.84730 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.6791 -4.1705 -1.2656 12 6 1.7623 -5.2851 -1.6996 13 6 2.0115 -6.5918 -1.3080 14 6 1.1388 -7.5840 -1.7274 15 6 0.0631 -7.2419 -2.5251 16 7 -0.1401 -5.9890 -2.8822 17 6 0.6664 -5.0187 -2.4980 18 6 2.6410 -4.1239 1.1703 19 8 3.4327 -5.0492 1.1711 20 6 2.1814 -3.5845 2.3957 21 6 2.7182 -4.0083 3.5668 22 6 3.8749 -4.8254 3.5610 23 6 4.1238 -5.8878 4.4050 24 6 5.3757 -6.4043 4.0380 25 6 5.8352 -5.6497 3.0151 26 8 4.9299 -4.7041 2.7284 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.6868 -3.3895 -2.0260 31 1 3.6885 -4.5604 -1.1350 32 1 2.8630 -6.8303 -0.6879 33 1 1.3001 -8.6120 -1.4383 34 1 -0.6191 -8.0095 -2.8592 35 1 0.4674 -4.0042 -2.8103 36 1 1.4033 -2.8355 2.3981 37 1 2.2636 -3.7227 4.5040 38 1 3.4792 -6.2535 5.1906 39 1 5.8791 -7.2463 4.4898 40 1 6.7782 -5.7893 2.5075 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096870925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:44 Heat of formation + Delta-G solvation = 47.373476 kcal Electronic energy + Delta-G solvation = -25507.047455 eV Core-core repulsion = 21868.690528 eV Total energy + Delta-G solvation = -3638.356927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03118 -40.07263 -39.06536 -35.40993 -33.74992 -32.96171 -32.44629 -32.12109 -31.32317 -28.56776 -27.54946 -26.13095 -23.61834 -23.34012 -22.74468 -21.65598 -21.28713 -20.11227 -18.24544 -17.24681 -16.92702 -16.48475 -16.33715 -15.93579 -15.48790 -15.27696 -15.09372 -14.49824 -14.20472 -13.73042 -13.53323 -13.39399 -12.94567 -12.71474 -12.60910 -12.51930 -12.41452 -12.17733 -11.95679 -11.77275 -11.48832 -11.16395 -10.99605 -10.72382 -10.23512 -9.86590 -9.68683 -9.60186 -9.48288 -9.23753 -9.20396 -8.75482 -8.58140 -7.85387 -7.53064 -6.22192 -4.30337 1.02528 1.32000 1.53966 2.49322 3.00482 3.22504 3.27805 3.30606 3.56370 3.83846 4.02535 4.25897 4.33573 4.68371 5.03827 5.10223 5.11029 5.18632 5.24103 5.29090 5.30329 5.33875 5.42927 5.63089 5.86384 5.93122 6.03506 6.04324 6.09623 6.18497 6.33408 6.36817 6.41873 6.59315 6.62584 6.72963 6.86928 6.94944 7.12166 7.45564 7.57290 7.72160 7.99587 8.19676 8.24271 8.74437 8.95283 9.38036 10.84153 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.007751 B = 0.006528 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3611.475358 B = 4287.878814 C = 7236.782659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.236 3.764 10 N -0.583 5.583 11 C 0.162 3.838 12 C -0.144 4.144 13 C -0.055 4.055 14 C -0.182 4.182 15 C 0.089 3.911 16 N -0.490 5.490 17 C 0.114 3.886 18 C 0.539 3.461 19 O -0.556 6.556 20 C -0.161 4.161 21 C -0.042 4.042 22 C 0.040 3.960 23 C -0.205 4.205 24 C -0.226 4.226 25 C -0.031 4.031 26 O -0.129 6.129 27 H 0.267 0.733 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -11.667 3.063 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.117 3.883 10 N -0.312 5.312 11 C 0.038 3.962 12 C -0.147 4.147 13 C -0.081 4.081 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.331 3.669 19 O -0.438 6.438 20 C -0.181 4.181 21 C -0.062 4.062 22 C -0.011 4.011 23 C -0.224 4.224 24 C -0.245 4.245 25 C -0.102 4.102 26 O -0.021 6.021 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.550 -11.542 2.260 12.611 hybrid contribution 1.000 0.637 0.651 1.353 sum 5.550 -10.905 2.911 12.578 Atomic orbital electron populations 1.69906 1.05984 1.27537 1.49383 1.24929 0.94833 0.99266 0.94638 0.86572 0.79569 0.82563 0.78885 1.20103 1.21128 1.20070 1.21451 0.93618 0.90328 1.52399 0.92049 1.19509 0.87520 0.82524 0.98775 1.48186 1.45287 1.33959 1.03815 1.20109 0.95869 0.93212 0.87041 1.21442 0.98649 0.95987 0.98654 1.21658 0.98590 0.92171 0.95705 1.22101 0.96991 1.00400 1.00677 1.22684 0.95781 0.93560 0.94796 1.67701 1.28947 1.00803 1.22362 1.22808 0.89639 0.98543 0.93312 1.17083 0.81334 0.83427 0.85052 1.90740 1.35142 1.30362 1.87585 1.22716 1.02964 0.99910 0.92521 1.20541 0.91860 0.95121 0.98702 1.19650 0.90344 0.99699 0.91449 1.22019 0.98288 0.98927 1.03152 1.21506 0.97689 1.03745 1.01559 1.23990 0.95496 0.91238 0.99463 1.84316 1.24317 1.45938 1.47570 0.92372 0.94482 0.94301 0.89141 0.89796 0.84520 0.85341 0.83324 0.82525 0.83219 0.83268 0.83944 0.84226 0.79152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.56 9.39 -34.44 -0.32 -13.88 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.24 5.39 4.89 -5.19 -0.03 5.36 16 10 N -0.58 -11.82 2.44 -179.87 -0.44 -12.26 16 11 C 0.16 2.88 5.56 -5.19 -0.03 2.86 16 12 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 13 C -0.05 -0.85 9.86 -39.27 -0.39 -1.24 16 14 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 15 C 0.09 1.25 11.18 -17.55 -0.20 1.05 16 16 N -0.49 -8.13 10.36 -13.25 -0.14 -8.27 16 17 C 0.11 1.92 10.86 -17.55 -0.19 1.73 16 18 C 0.54 10.95 7.23 -15.00 -0.11 10.84 16 19 O -0.56 -11.57 11.67 -19.70 -0.23 -11.80 16 20 C -0.16 -2.98 9.15 -39.25 -0.36 -3.34 16 21 C -0.04 -0.67 9.95 -39.23 -0.39 -1.06 16 22 C 0.04 0.67 5.34 -38.40 -0.21 0.47 16 23 C -0.20 -3.01 10.90 -38.90 -0.42 -3.44 16 24 C -0.23 -3.09 10.87 -39.90 -0.43 -3.53 16 25 C -0.03 -0.46 12.06 29.64 0.36 -0.10 16 26 O -0.13 -2.35 7.80 -20.13 -0.16 -2.50 16 27 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.04 0.92 6.01 -51.93 -0.31 0.61 16 30 H 0.09 1.57 8.02 -51.93 -0.42 1.15 16 31 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 32 H 0.14 2.17 7.71 -52.49 -0.40 1.76 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 36 H 0.15 2.81 6.03 -52.48 -0.32 2.49 16 37 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -30.14 350.43 -8.51 -38.64 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.76 Total: 7.40 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -3.78 Total: -8.51 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.16 Total: -43.69 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.39 Total: -14.31 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.14 -8.51 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096870925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.018 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds