Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 120.00016 * 2 1 4 4 H 1.48509 * 109.47060 * 239.99972 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47095 * 120.00206 * 3 2 1 7 7 C 1.37879 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00028 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47333 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99765 * 270.00282 * 10 9 7 12 12 C 1.50701 * 109.46789 * 269.99951 * 11 10 9 13 13 C 1.38674 * 120.41572 * 269.71991 * 12 11 10 14 14 C 1.38636 * 118.41718 * 179.78598 * 13 12 11 15 15 C 1.38225 * 119.16144 * 0.51431 * 14 13 12 16 16 N 1.31853 * 120.76210 * 359.72328 * 15 14 13 17 17 C 1.31890 * 121.72945 * 0.02562 * 16 15 14 18 18 C 1.34774 * 120.00481 * 90.00084 * 10 9 7 19 19 O 1.21771 * 120.00346 * 180.02562 * 18 10 9 20 20 C 1.41555 * 119.99391 * 359.97438 * 18 10 9 21 21 C 1.35623 * 119.99798 * 186.44764 * 20 18 10 22 22 C 1.41615 * 119.99814 * 10.02014 * 21 20 18 23 23 C 1.37956 * 126.09897 * 218.73200 * 22 21 20 24 24 C 1.40317 * 106.52577 * 179.72464 * 23 22 21 25 25 C 1.35159 * 107.20347 * 0.40735 * 24 23 22 26 26 O 1.34019 * 109.03647 * 359.58323 * 25 24 23 27 27 H 0.97003 * 120.00539 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46684 * 59.99955 * 9 7 2 29 29 H 1.08996 * 109.47113 * 300.00210 * 9 7 2 30 30 H 1.09003 * 109.47323 * 29.99679 * 11 10 9 31 31 H 1.08997 * 109.47356 * 150.00103 * 11 10 9 32 32 H 1.08001 * 120.79280 * 0.02562 * 13 12 11 33 33 H 1.07999 * 120.41463 * 180.22280 * 14 13 12 34 34 H 1.07995 * 119.61759 * 179.75250 * 15 14 13 35 35 H 1.08000 * 119.61463 * 180.02562 * 17 16 15 36 36 H 1.08003 * 120.00520 * 6.45301 * 20 18 10 37 37 H 1.08005 * 120.00367 * 190.01640 * 21 20 18 38 38 H 1.07999 * 126.73709 * 0.02562 * 23 22 21 39 39 H 1.08001 * 126.39710 * 180.28441 * 24 23 22 40 40 H 1.08000 * 125.47853 * 179.84730 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.6791 -4.1705 -1.2656 12 6 1.7623 -5.2851 -1.6996 13 6 2.0115 -6.5918 -1.3080 14 6 1.1388 -7.5840 -1.7274 15 6 0.0631 -7.2419 -2.5251 16 7 -0.1401 -5.9890 -2.8822 17 6 0.6664 -5.0187 -2.4980 18 6 2.6410 -4.1239 1.1703 19 8 3.4327 -5.0492 1.1711 20 6 2.1814 -3.5845 2.3957 21 6 2.7182 -4.0083 3.5668 22 6 3.8749 -4.8254 3.5610 23 6 4.1238 -5.8878 4.4050 24 6 5.3757 -6.4043 4.0380 25 6 5.8352 -5.6497 3.0151 26 8 4.9299 -4.7041 2.7284 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.6868 -3.3895 -2.0260 31 1 3.6885 -4.5604 -1.1350 32 1 2.8630 -6.8303 -0.6879 33 1 1.3001 -8.6120 -1.4383 34 1 -0.6191 -8.0095 -2.8592 35 1 0.4674 -4.0042 -2.8103 36 1 1.4033 -2.8355 2.3981 37 1 2.2636 -3.7227 4.5040 38 1 3.4792 -6.2535 5.1906 39 1 5.8791 -7.2463 4.4898 40 1 6.7782 -5.7893 2.5075 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096870925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = 32.346451 kcal Electronic energy + Delta-G solvation = -25507.699076 eV Core-core repulsion = 21868.690528 eV Total energy + Delta-G solvation = -3639.008548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.22603 -41.38687 -40.47473 -36.96690 -35.20969 -34.60655 -33.68678 -33.49726 -32.58608 -29.80247 -29.33602 -27.53503 -25.21354 -24.60122 -24.25630 -22.90487 -22.45073 -21.38594 -19.63886 -18.71797 -18.58154 -17.93301 -17.69818 -17.18621 -16.83549 -16.71691 -16.45956 -16.18294 -15.53387 -15.10249 -14.82126 -14.63016 -14.32677 -14.22459 -13.94423 -13.90300 -13.61467 -13.56673 -13.31849 -13.22771 -13.00074 -12.76671 -12.65866 -12.42930 -12.03366 -11.73830 -11.00998 -10.91091 -10.73539 -10.59783 -10.52215 -10.47082 -9.97988 -9.45370 -8.78803 -8.19505 -6.34588 -0.28563 0.11852 0.31901 1.29505 1.42590 1.43439 1.51241 1.85831 2.32907 2.38579 2.50570 2.64264 2.97039 3.10323 3.52948 3.80001 3.88242 3.94849 4.04322 4.08631 4.12667 4.23621 4.26804 4.45627 4.58653 4.68671 4.72089 4.82207 4.87870 4.89935 4.97009 5.13833 5.16632 5.17963 5.25355 5.36943 5.46425 5.65574 5.76316 5.76659 5.85944 6.05708 6.41345 6.56515 6.81641 6.99522 7.32724 7.43913 8.85283 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.007751 B = 0.006528 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3611.475358 B = 4287.878814 C = 7236.782659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.255 3.745 10 N -0.590 5.590 11 C 0.165 3.835 12 C -0.154 4.154 13 C -0.063 4.063 14 C -0.169 4.169 15 C 0.089 3.911 16 N -0.510 5.510 17 C 0.100 3.900 18 C 0.537 3.463 19 O -0.565 6.565 20 C -0.211 4.211 21 C -0.005 4.005 22 C -0.009 4.009 23 C -0.188 4.188 24 C -0.228 4.228 25 C -0.038 4.038 26 O -0.162 6.162 27 H 0.268 0.732 28 H 0.020 0.980 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.188 0.812 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 -13.596 4.314 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.068 0.932 9 C 0.134 3.866 10 N -0.319 5.319 11 C 0.041 3.959 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.189 4.189 15 C -0.068 4.068 16 N -0.219 5.219 17 C -0.057 4.057 18 C 0.330 3.670 19 O -0.449 6.449 20 C -0.231 4.231 21 C -0.024 4.024 22 C -0.059 4.059 23 C -0.207 4.207 24 C -0.246 4.246 25 C -0.107 4.107 26 O -0.056 6.056 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.183 0.817 34 H 0.204 0.796 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.205 0.795 38 H 0.187 0.813 39 H 0.190 0.810 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.441 -13.479 3.511 14.954 hybrid contribution 0.835 1.030 0.362 1.374 sum 6.276 -12.449 3.872 14.470 Atomic orbital electron populations 1.69998 1.07148 1.28255 1.50340 1.25601 0.95512 1.02122 0.94351 0.85667 0.78448 0.79096 0.78823 1.19809 1.20592 1.19819 1.21611 0.93149 0.91562 1.51965 0.93150 1.19081 0.87469 0.82759 0.97260 1.48127 1.45232 1.33687 1.04894 1.20093 0.96080 0.93576 0.86114 1.21279 0.98704 0.96222 0.99500 1.21724 0.99119 0.92179 0.95911 1.22461 0.95656 1.01570 0.99180 1.23341 0.96270 0.93250 0.93904 1.67712 1.29186 1.01895 1.23128 1.22705 0.90182 0.98645 0.94132 1.17352 0.81012 0.83293 0.85390 1.90706 1.35624 1.30773 1.87780 1.22549 1.04962 1.02609 0.92975 1.21054 0.90337 0.91818 0.99222 1.20007 0.91032 1.01866 0.92956 1.22481 0.98598 0.97377 1.02265 1.21943 0.97299 1.04300 1.01099 1.24793 0.95995 0.90250 0.99711 1.84290 1.25347 1.47396 1.48612 0.92284 0.96150 0.95426 0.89606 0.89968 0.84953 0.81679 0.79606 0.83445 0.84426 0.79546 0.81270 0.81029 0.76289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.50 13.29 21.45 0.28 -50.22 16 2 C 0.02 1.30 5.46 84.66 0.46 1.76 16 3 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.54 -28.39 9.39 25.60 0.24 -28.15 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.26 12.29 4.89 85.63 0.42 12.70 16 10 N -0.59 -25.14 2.44 -841.18 -2.05 -27.20 16 11 C 0.16 6.20 5.56 85.63 0.48 6.67 16 12 C -0.15 -5.30 5.48 -19.77 -0.11 -5.41 16 13 C -0.06 -1.93 9.86 22.47 0.22 -1.70 16 14 C -0.17 -4.19 10.11 22.36 0.23 -3.97 16 15 C 0.09 2.32 11.18 84.69 0.95 3.26 16 16 N -0.51 -16.79 10.36 -195.85 -2.03 -18.82 16 17 C 0.10 3.49 10.86 84.67 0.92 4.41 16 18 C 0.54 22.54 7.23 85.06 0.61 23.16 16 19 O -0.57 -23.95 11.67 19.16 0.22 -23.73 16 20 C -0.21 -8.05 9.15 22.48 0.21 -7.84 16 21 C 0.00 -0.15 9.95 22.50 0.22 0.08 16 22 C -0.01 -0.29 5.34 23.04 0.12 -0.16 16 23 C -0.19 -4.99 10.90 22.71 0.25 -4.75 16 24 C -0.23 -5.51 10.87 22.07 0.24 -5.27 16 25 C -0.04 -1.03 12.06 67.11 0.81 -0.22 16 26 O -0.16 -5.82 7.80 17.61 0.14 -5.69 16 27 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.02 1.04 8.07 -2.38 -0.02 1.02 16 29 H 0.03 1.39 6.01 -2.39 -0.01 1.38 16 30 H 0.09 3.20 8.02 -2.39 -0.02 3.18 16 31 H 0.08 3.05 7.37 -2.39 -0.02 3.03 16 32 H 0.13 4.16 7.71 -2.91 -0.02 4.14 16 33 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.15 5.23 8.06 -2.91 -0.02 5.21 16 36 H 0.14 5.48 6.03 -2.91 -0.02 5.46 16 37 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.22 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -66.40 350.43 5.91 -60.49 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 1.05 Total: 26.64 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 6.27 Total: -5.43 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -3.80 Total: -96.24 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: 0.36 Total: -29.41 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -66.40 5.91 -60.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096870925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.839 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds