Wall clock time and date at job start Fri Apr 10 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00406 * 2 1 4 4 H 1.48499 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46900 * 299.99694 * 3 2 1 6 6 H 1.48496 * 109.47094 * 59.99693 * 3 2 1 7 7 C 1.38805 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00360 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99472 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99729 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47185 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00031 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00181 * 179.97438 * 11 10 9 14 14 C 1.46927 * 120.63081 * 359.97316 * 13 11 10 15 15 C 1.53191 * 108.77547 * 126.41411 * 14 13 11 16 16 C 1.53040 * 109.34099 * 54.62128 * 15 14 13 17 17 C 1.53037 * 109.53587 * 298.68623 * 16 15 14 18 18 H 1.08994 * 109.49901 * 301.34229 * 17 16 15 19 19 N 1.46500 * 109.49491 * 181.28070 * 17 16 15 20 20 C 1.46768 * 124.34912 * 119.78966 * 19 17 16 21 21 C 1.54476 * 105.47356 * 163.25066 * 20 19 17 22 22 C 1.54628 * 101.76724 * 25.41305 * 21 20 19 23 23 C 1.34424 * 124.35300 * 300.08858 * 19 17 16 24 24 O 1.21281 * 124.93585 * 0.12015 * 23 19 17 25 25 C 1.46923 * 120.63383 * 180.02562 * 13 11 10 26 26 H 0.97002 * 119.99772 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47525 * 60.00025 * 10 9 7 28 28 H 1.09000 * 109.46801 * 299.99923 * 10 9 7 29 29 H 1.09001 * 109.59279 * 246.20244 * 14 13 11 30 30 H 1.08999 * 109.58676 * 6.48545 * 14 13 11 31 31 H 1.08997 * 109.49863 * 174.58948 * 15 14 13 32 32 H 1.09004 * 109.49854 * 294.68731 * 15 14 13 33 33 H 1.08993 * 109.48886 * 178.64235 * 16 15 14 34 34 H 1.09001 * 109.42727 * 58.68725 * 16 15 14 35 35 H 1.09003 * 110.24577 * 282.24633 * 20 19 17 36 36 H 1.08999 * 110.24371 * 44.25013 * 20 19 17 37 37 H 1.09008 * 110.97014 * 267.29699 * 21 20 19 38 38 H 1.08999 * 111.00358 * 143.54909 * 21 20 19 39 39 H 1.09002 * 110.48704 * 216.52755 * 22 21 20 40 40 H 1.09006 * 110.48485 * 93.88228 * 22 21 20 41 41 H 1.08998 * 109.58754 * 113.79934 * 25 13 11 42 42 H 1.08998 * 109.58629 * 353.37113 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7279 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7908 -5.5024 0.0000 13 7 2.8437 -6.3432 -0.0007 14 6 4.2955 -6.1175 -0.0014 15 6 4.9156 -6.8928 1.1653 16 6 4.5084 -8.3649 1.0691 17 6 2.9855 -8.4820 1.1654 18 1 2.6465 -8.0527 2.1082 19 7 2.5988 -9.8937 1.1038 20 6 1.8723 -10.6003 2.1654 21 6 1.3221 -11.8836 1.5044 22 6 2.3212 -12.0933 0.3430 23 6 2.8689 -10.7098 0.0704 24 8 3.4646 -10.3840 -0.9346 25 6 2.3436 -7.7247 -0.0019 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7315 0.8905 28 1 3.1242 -3.7314 -0.8895 29 1 4.7199 -6.4706 -0.9413 30 1 4.4999 -5.0532 0.1147 31 1 6.0016 -6.8120 1.1196 32 1 4.5588 -6.4781 2.1082 33 1 4.9679 -8.9233 1.8845 34 1 4.8443 -8.7724 0.1156 35 1 2.5497 -10.8564 2.9801 36 1 1.0521 -9.9850 2.5350 37 1 0.3121 -11.7254 1.1262 38 1 1.3494 -12.7233 2.1989 39 1 1.8075 -12.4804 -0.5370 40 1 3.1221 -12.7678 0.6459 41 1 2.6091 -8.2086 -0.9418 42 1 1.2601 -7.7212 0.1164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111058408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:51 Heat of formation + Delta-G solvation = -68.993320 kcal Electronic energy + Delta-G solvation = -23877.666697 eV Core-core repulsion = 20369.707678 eV Total energy + Delta-G solvation = -3507.959019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98562 -39.56217 -37.12992 -36.54293 -33.69921 -32.42852 -32.03732 -30.24521 -28.47255 -27.86183 -25.57637 -25.09205 -23.51010 -22.30906 -21.55084 -19.34089 -18.93898 -17.71857 -16.99057 -16.87929 -16.52780 -15.98870 -15.26587 -14.96308 -14.80283 -14.55319 -14.20232 -14.05044 -13.99213 -13.78623 -13.49034 -13.24054 -13.20580 -12.81959 -12.70999 -12.42644 -12.02048 -11.87925 -11.74810 -11.39685 -11.14360 -11.08674 -11.06458 -11.00418 -10.91485 -10.74495 -9.86809 -9.79090 -9.38185 -9.10409 -9.06984 -8.42117 -8.21616 -6.49833 -6.21507 -3.91934 2.33204 2.53896 3.03125 3.07771 3.21767 3.27793 3.32165 3.62697 4.00180 4.10393 4.20315 4.42512 4.53059 4.59691 4.69597 4.76929 4.86772 4.97591 5.07278 5.12125 5.13785 5.16360 5.31662 5.33362 5.39099 5.43779 5.58475 5.59446 5.67553 5.70239 5.74852 5.78153 5.89610 5.96291 6.03222 6.12425 6.31049 6.64873 6.87511 7.56668 7.60409 7.93850 8.35710 8.55871 9.23938 10.85997 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.002786 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.522112 B =10049.568540 C =10495.365243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.517 6.517 13 N -0.617 5.617 14 C 0.105 3.895 15 C -0.130 4.130 16 C -0.132 4.132 17 C 0.147 3.853 18 H 0.092 0.908 19 N -0.615 5.615 20 C 0.101 3.899 21 C -0.132 4.132 22 C -0.156 4.156 23 C 0.516 3.484 24 O -0.527 6.527 25 C 0.103 3.897 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.728 -24.039 5.766 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.300 4.300 11 C 0.324 3.676 12 O -0.392 6.392 13 N -0.353 5.353 14 C -0.018 4.018 15 C -0.169 4.169 16 C -0.170 4.170 17 C 0.043 3.957 18 H 0.111 0.889 19 N -0.349 5.349 20 C -0.023 4.023 21 C -0.170 4.170 22 C -0.196 4.196 23 C 0.303 3.697 24 O -0.403 6.403 25 C -0.021 4.021 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.103 -23.963 5.235 25.536 hybrid contribution 2.009 1.234 0.142 2.362 sum 9.112 -22.729 5.378 25.071 Atomic orbital electron populations 1.70029 1.05956 1.27329 1.46973 1.24997 0.95029 0.99039 0.94561 0.86113 0.79590 0.81881 0.77893 1.19607 1.20564 1.20582 1.22897 0.94916 0.91583 1.58790 0.90881 1.85408 1.05046 0.96379 1.96695 1.23554 1.06462 0.95216 1.04783 1.20361 0.86174 0.86180 0.74906 1.90686 1.15201 1.85216 1.48065 1.48025 1.06542 1.05243 1.75495 1.21770 0.79874 1.01577 0.98567 1.21894 1.01032 0.94672 0.99332 1.21909 0.94483 0.97046 1.03573 1.21359 0.95232 0.78958 1.00130 0.88945 1.48371 1.57318 1.09956 1.19288 1.22138 0.96304 0.93564 0.90245 1.22606 0.99448 0.97494 0.97454 1.22345 1.00545 0.95803 1.00942 1.20928 0.78747 0.87618 0.82360 1.90723 1.41647 1.79761 1.28213 1.21805 1.00440 0.81466 0.98383 0.92247 0.89180 0.89183 0.91260 0.88909 0.90147 0.91137 0.91646 0.90093 0.90987 0.90010 0.89756 0.89121 0.88027 0.87926 0.90358 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.09 4.50 36.01 0.16 -2.93 16 11 C 0.54 10.54 7.72 -10.99 -0.08 10.46 16 12 O -0.52 -12.12 15.28 5.56 0.08 -12.03 16 13 N -0.62 -9.42 2.97 -172.75 -0.51 -9.93 16 14 C 0.11 1.25 6.34 -3.71 -0.02 1.23 16 15 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 16 C -0.13 -1.32 5.15 -26.69 -0.14 -1.46 16 17 C 0.15 1.61 2.90 -67.79 -0.20 1.41 16 18 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 19 N -0.61 -5.85 2.83 -164.69 -0.47 -6.31 16 20 C 0.10 0.61 7.30 -3.12 -0.02 0.58 16 21 C -0.13 -0.59 7.18 -25.10 -0.18 -0.77 16 22 C -0.16 -1.00 6.86 -26.75 -0.18 -1.18 16 23 C 0.52 5.53 7.40 -10.86 -0.08 5.45 16 24 O -0.53 -7.72 15.09 5.56 0.08 -7.64 16 25 C 0.10 1.46 5.79 -3.69 -0.02 1.44 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.09 1.70 7.70 -51.92 -0.40 1.30 16 28 H 0.09 1.74 7.94 -51.92 -0.41 1.33 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.96 6.82 -51.93 -0.35 0.61 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.21 6.65 -51.93 -0.35 0.86 16 42 H 0.09 1.48 7.00 -51.93 -0.36 1.12 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -36.16 350.68 -9.13 -45.30 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.37 Total: -1.54 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.73 Total: -0.12 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.25 Total: -41.76 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.17 Total: -19.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.16 -9.13 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111058408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.694 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds