Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 120.00437 * 2 1 4 4 H 1.48502 * 109.47224 * 270.00337 * 3 2 1 5 5 H 1.48506 * 109.46712 * 29.99788 * 3 2 1 6 6 H 1.48499 * 109.47342 * 149.99755 * 3 2 1 7 7 C 1.37885 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99614 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47080 * 179.67806 * 9 7 2 11 11 C 1.46894 * 111.00085 * 288.73132 * 10 9 7 12 12 C 1.53007 * 109.46983 * 169.99854 * 11 10 9 13 13 N 1.46904 * 109.46971 * 180.02562 * 12 11 10 14 14 C 1.47017 * 111.00017 * 293.63426 * 13 12 11 15 15 C 1.53096 * 109.25672 * 177.60844 * 14 13 12 16 16 O 1.43013 * 109.25687 * 56.85033 * 15 14 13 17 17 C 1.43009 * 113.73957 * 301.32864 * 16 15 14 18 18 C 1.47013 * 110.99747 * 170.00090 * 13 12 11 19 19 C 1.46900 * 110.99857 * 164.77675 * 10 9 7 20 20 C 1.50703 * 109.47077 * 288.20021 * 19 10 9 21 21 C 1.35342 * 123.76908 * 94.99923 * 20 19 10 22 22 S 1.72117 * 104.15533 * 180.02562 * 21 20 19 23 23 N 1.56513 * 95.88521 * 0.02562 * 22 21 20 24 24 N 1.27581 * 109.21974 * 0.02562 * 23 22 21 25 25 H 0.97004 * 120.00040 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47100 * 59.68082 * 9 7 2 27 27 H 1.08999 * 109.47297 * 299.68057 * 9 7 2 28 28 H 1.08996 * 109.47387 * 289.99622 * 11 10 9 29 29 H 1.09003 * 109.47106 * 50.00288 * 11 10 9 30 30 H 1.08993 * 109.47085 * 299.99596 * 12 11 10 31 31 H 1.08994 * 109.46788 * 60.00025 * 12 11 10 32 32 H 1.09003 * 109.50469 * 297.54543 * 14 13 12 33 33 H 1.09001 * 109.50580 * 57.67472 * 14 13 12 34 34 H 1.09001 * 109.50907 * 296.91094 * 15 14 13 35 35 H 1.09002 * 109.53613 * 176.80137 * 15 14 13 36 36 H 1.09001 * 109.50710 * 298.73630 * 17 16 15 37 37 H 1.09000 * 109.54419 * 178.63451 * 17 16 15 38 38 H 1.08996 * 109.50681 * 302.32662 * 18 13 12 39 39 H 1.09001 * 109.50817 * 62.41692 * 18 13 12 40 40 H 1.08999 * 109.47027 * 168.20453 * 19 10 9 41 41 H 1.09001 * 109.47317 * 48.19910 * 19 10 9 42 42 H 1.07999 * 127.91864 * 0.04724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0089 11 6 2.8755 -3.7258 -1.3115 12 6 4.0290 -4.7258 -1.2089 13 7 4.6994 -4.8354 -2.5114 14 6 3.8091 -5.4400 -3.5130 15 6 4.5246 -5.4803 -4.8659 16 8 5.7529 -6.1999 -4.7286 17 6 6.6442 -5.6381 -3.7616 18 6 5.9502 -5.5994 -2.3975 19 6 1.5437 -4.8769 0.3508 20 6 1.2079 -4.8667 1.8200 21 6 0.0043 -4.4938 2.3140 22 16 0.1754 -4.6710 4.0175 23 7 1.6585 -5.1697 3.9788 24 7 2.0539 -5.2178 2.7668 25 1 -0.4850 0.8401 -0.0004 26 1 0.6197 -2.5542 -0.8874 27 1 0.6290 -2.5596 0.8925 28 1 2.1615 -4.0703 -2.0595 29 1 3.2652 -2.7504 -1.6032 30 1 4.7431 -4.3813 -0.4611 31 1 3.6394 -5.7010 -0.9172 32 1 3.5522 -6.4541 -3.2067 33 1 2.9005 -4.8440 -3.5994 34 1 4.7337 -4.4632 -5.1975 35 1 3.8906 -5.9791 -5.5989 36 1 6.9150 -4.6256 -4.0610 37 1 7.5434 -6.2507 -3.6953 38 1 6.6046 -5.1198 -1.6696 39 1 5.7277 -6.6158 -2.0727 40 1 2.2111 -5.7115 0.1365 41 1 0.6279 -4.9853 -0.2304 42 1 -0.8644 -4.1616 1.7651 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127771806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = 44.983928 kcal Electronic energy + Delta-G solvation = -24057.913498 eV Core-core repulsion = 20587.189655 eV Total energy + Delta-G solvation = -3470.723844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56057 -39.56649 -37.28383 -35.42294 -32.78077 -32.02092 -31.22178 -29.47650 -27.79505 -26.57653 -26.14418 -24.32734 -24.04702 -21.99014 -20.99001 -20.44919 -20.03135 -17.91442 -16.74488 -16.38077 -16.14426 -15.64044 -15.45700 -15.15532 -15.05535 -14.90960 -14.73155 -14.18517 -14.01374 -13.66245 -13.11968 -12.92211 -12.56305 -12.33352 -12.09572 -11.88775 -11.76740 -11.51597 -11.42918 -11.04138 -10.93750 -10.77821 -10.68466 -10.49932 -10.33287 -10.00505 -9.81485 -9.68753 -9.50455 -9.35690 -9.23498 -8.48580 -8.28598 -7.41804 -6.09168 -4.09377 0.58166 1.44107 2.02420 2.58498 3.29060 3.35463 3.40858 3.70969 3.87140 4.39090 4.40289 4.82372 4.91162 4.98971 5.03866 5.10870 5.23023 5.23889 5.28486 5.33693 5.45672 5.51008 5.55791 5.65048 5.67979 5.75200 5.77846 5.88060 5.95674 5.98019 6.08124 6.39009 6.56539 6.99394 7.09879 7.11126 7.13302 7.18431 7.72494 7.96363 8.05582 8.14953 8.42542 8.98124 9.55027 11.01575 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.008893 B = 0.004666 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.765677 B = 5999.489988 C = 8418.192648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.529 5.529 11 C 0.074 3.926 12 C 0.059 3.941 13 N -0.535 5.535 14 C 0.014 3.986 15 C 0.064 3.936 16 O -0.390 6.390 17 C 0.064 3.936 18 C 0.019 3.981 19 C 0.131 3.869 20 C 0.050 3.950 21 C -0.272 4.272 22 S 0.394 5.606 23 N -0.297 5.297 24 N -0.223 5.223 25 H 0.261 0.739 26 H -0.006 1.006 27 H 0.033 0.967 28 H 0.022 0.978 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -12.241 -2.709 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.255 5.255 11 C -0.055 4.055 12 C -0.069 4.069 13 N -0.260 5.260 14 C -0.114 4.114 15 C -0.013 4.013 16 O -0.309 6.309 17 C -0.013 4.013 18 C -0.109 4.109 19 C -0.001 4.001 20 C -0.095 4.095 21 C -0.429 4.429 22 S 0.529 5.471 23 N -0.276 5.276 24 N -0.091 5.091 25 H 0.071 0.929 26 H 0.012 0.988 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.793 -12.052 -0.815 12.661 hybrid contribution -0.907 0.626 -1.620 1.960 sum 2.886 -11.426 -2.435 12.034 Atomic orbital electron populations 1.69934 1.06020 1.26808 1.51212 1.24950 0.94856 0.99251 0.95394 0.86524 0.79901 0.83082 0.78130 1.20636 1.21297 1.19763 1.21133 0.93635 0.89690 1.49799 0.91768 1.19820 0.89967 0.87264 0.96268 1.61947 1.32210 1.02365 1.28939 1.21906 0.93771 1.00486 0.89312 1.22239 0.97328 0.98068 0.89267 1.62118 1.04971 1.50352 1.08583 1.22847 0.97175 0.98295 0.93075 1.22673 0.85396 0.97178 0.96066 1.87945 1.28822 1.54013 1.60079 1.22657 0.92211 0.99193 0.87227 1.22752 0.92807 0.96826 0.98530 1.20468 0.98345 0.95447 0.85827 1.22178 0.88686 0.99805 0.98813 1.28140 1.04691 1.08921 1.01132 1.81218 1.13632 1.47718 1.04528 1.78883 1.09726 1.22336 1.16686 1.71090 1.28686 1.15996 0.93333 0.92942 0.98815 0.94941 0.96022 0.88562 0.89729 0.95118 0.94290 0.89086 0.92124 0.88693 0.92208 0.88730 0.89518 0.94228 0.89864 0.93355 0.78757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -13.70 8.43 -34.44 -0.29 -13.99 16 8 H 0.06 1.77 7.55 -52.49 -0.40 1.38 16 9 C 0.19 4.66 4.57 -4.98 -0.02 4.64 16 10 N -0.53 -10.73 4.40 -237.52 -1.05 -11.77 16 11 C 0.07 1.33 4.74 -3.82 -0.02 1.31 16 12 C 0.06 0.90 4.92 -3.82 -0.02 0.88 16 13 N -0.53 -7.38 4.73 -234.30 -1.11 -8.49 16 14 C 0.01 0.18 5.44 -3.71 -0.02 0.16 16 15 C 0.06 0.72 7.01 37.21 0.26 0.98 16 16 O -0.39 -4.87 10.83 -35.23 -0.38 -5.25 16 17 C 0.06 0.69 7.01 37.21 0.26 0.95 16 18 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 19 C 0.13 2.24 5.33 -4.97 -0.03 2.22 16 20 C 0.05 0.88 5.91 -83.66 -0.49 0.39 16 21 C -0.27 -4.22 9.96 29.70 0.30 -3.93 16 22 S 0.39 5.48 23.40 -107.50 -2.52 2.97 16 23 N -0.30 -5.19 12.54 60.35 0.76 -4.43 16 24 N -0.22 -4.19 11.68 32.45 0.38 -3.81 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H -0.01 -0.15 8.06 -51.93 -0.42 -0.57 16 27 H 0.03 0.83 6.10 -51.93 -0.32 0.51 16 28 H 0.02 0.37 6.50 -51.93 -0.34 0.04 16 29 H 0.10 1.99 7.06 -51.93 -0.37 1.62 16 30 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 31 H 0.03 0.46 6.26 -51.93 -0.33 0.13 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 1.30 5.94 -51.93 -0.31 0.99 16 41 H 0.05 0.77 8.03 -51.93 -0.42 0.35 16 42 H 0.20 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -31.01 349.38 -9.27 -40.28 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.15 Total: -1.50 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.19 Total: -4.73 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.28 Total: -53.44 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.38 Total: -5.25 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -2.52 Total: 2.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.01 -9.27 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127771806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.269 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds