Wall clock time and date at job start Fri Apr 10 2020 18:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 120.00437 * 2 1 4 4 H 1.48502 * 109.47224 * 270.00337 * 3 2 1 5 5 H 1.48506 * 109.46712 * 29.99788 * 3 2 1 6 6 H 1.48499 * 109.47342 * 149.99755 * 3 2 1 7 7 C 1.37885 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99614 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47080 * 179.67806 * 9 7 2 11 11 C 1.46894 * 111.00085 * 288.73132 * 10 9 7 12 12 C 1.53007 * 109.46983 * 169.99854 * 11 10 9 13 13 N 1.46904 * 109.46971 * 180.02562 * 12 11 10 14 14 C 1.47017 * 111.00017 * 293.63426 * 13 12 11 15 15 C 1.53096 * 109.25672 * 177.60844 * 14 13 12 16 16 O 1.43013 * 109.25687 * 56.85033 * 15 14 13 17 17 C 1.43009 * 113.73957 * 301.32864 * 16 15 14 18 18 C 1.47013 * 110.99747 * 170.00090 * 13 12 11 19 19 C 1.46900 * 110.99857 * 164.77675 * 10 9 7 20 20 C 1.50703 * 109.47077 * 288.20021 * 19 10 9 21 21 C 1.35342 * 123.76908 * 94.99923 * 20 19 10 22 22 S 1.72117 * 104.15533 * 180.02562 * 21 20 19 23 23 N 1.56513 * 95.88521 * 0.02562 * 22 21 20 24 24 N 1.27581 * 109.21974 * 0.02562 * 23 22 21 25 25 H 0.97004 * 120.00040 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47100 * 59.68082 * 9 7 2 27 27 H 1.08999 * 109.47297 * 299.68057 * 9 7 2 28 28 H 1.08996 * 109.47387 * 289.99622 * 11 10 9 29 29 H 1.09003 * 109.47106 * 50.00288 * 11 10 9 30 30 H 1.08993 * 109.47085 * 299.99596 * 12 11 10 31 31 H 1.08994 * 109.46788 * 60.00025 * 12 11 10 32 32 H 1.09003 * 109.50469 * 297.54543 * 14 13 12 33 33 H 1.09001 * 109.50580 * 57.67472 * 14 13 12 34 34 H 1.09001 * 109.50907 * 296.91094 * 15 14 13 35 35 H 1.09002 * 109.53613 * 176.80137 * 15 14 13 36 36 H 1.09001 * 109.50710 * 298.73630 * 17 16 15 37 37 H 1.09000 * 109.54419 * 178.63451 * 17 16 15 38 38 H 1.08996 * 109.50681 * 302.32662 * 18 13 12 39 39 H 1.09001 * 109.50817 * 62.41692 * 18 13 12 40 40 H 1.08999 * 109.47027 * 168.20453 * 19 10 9 41 41 H 1.09001 * 109.47317 * 48.19910 * 19 10 9 42 42 H 1.07999 * 127.91864 * 0.04724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0089 11 6 2.8755 -3.7258 -1.3115 12 6 4.0290 -4.7258 -1.2089 13 7 4.6994 -4.8354 -2.5114 14 6 3.8091 -5.4400 -3.5130 15 6 4.5246 -5.4803 -4.8659 16 8 5.7529 -6.1999 -4.7286 17 6 6.6442 -5.6381 -3.7616 18 6 5.9502 -5.5994 -2.3975 19 6 1.5437 -4.8769 0.3508 20 6 1.2079 -4.8667 1.8200 21 6 0.0043 -4.4938 2.3140 22 16 0.1754 -4.6710 4.0175 23 7 1.6585 -5.1697 3.9788 24 7 2.0539 -5.2178 2.7668 25 1 -0.4850 0.8401 -0.0004 26 1 0.6197 -2.5542 -0.8874 27 1 0.6290 -2.5596 0.8925 28 1 2.1615 -4.0703 -2.0595 29 1 3.2652 -2.7504 -1.6032 30 1 4.7431 -4.3813 -0.4611 31 1 3.6394 -5.7010 -0.9172 32 1 3.5522 -6.4541 -3.2067 33 1 2.9005 -4.8440 -3.5994 34 1 4.7337 -4.4632 -5.1975 35 1 3.8906 -5.9791 -5.5989 36 1 6.9150 -4.6256 -4.0610 37 1 7.5434 -6.2507 -3.6953 38 1 6.6046 -5.1198 -1.6696 39 1 5.7277 -6.6158 -2.0727 40 1 2.2111 -5.7115 0.1365 41 1 0.6279 -4.9853 -0.2304 42 1 -0.8644 -4.1616 1.7651 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127771806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:56 Heat of formation + Delta-G solvation = 21.579199 kcal Electronic energy + Delta-G solvation = -24058.928404 eV Core-core repulsion = 20587.189655 eV Total energy + Delta-G solvation = -3471.738749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86514 -40.56549 -38.72109 -36.59268 -34.76317 -33.38461 -32.14821 -30.86172 -29.41632 -27.95899 -27.36595 -25.95762 -24.99356 -23.58011 -22.32412 -21.65939 -21.24640 -19.21259 -18.57050 -17.62097 -17.13310 -16.94316 -16.80767 -16.61951 -16.24726 -16.01554 -15.96527 -15.58090 -15.41935 -14.97946 -14.46822 -14.20959 -14.07898 -13.87208 -13.38721 -13.24145 -13.09873 -12.89625 -12.70042 -12.62817 -12.37005 -12.32481 -12.15339 -11.84364 -11.76954 -11.44619 -11.32335 -11.06111 -10.79917 -10.66831 -10.57028 -10.54722 -9.37661 -9.03928 -8.19559 -6.26315 -0.67005 0.24279 0.79460 1.24179 1.39418 1.40511 1.51279 2.40113 2.65613 2.96455 3.10855 3.13803 3.47130 3.86350 3.92158 4.01823 4.05520 4.09121 4.13064 4.21799 4.34802 4.36908 4.44040 4.49687 4.61474 4.64856 4.73466 4.76662 4.84051 4.88910 4.98991 5.02208 5.05574 5.25216 5.32014 5.66715 5.94490 5.99655 6.07696 6.18365 6.32227 6.57243 6.85872 6.87895 7.41962 8.90428 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.008893 B = 0.004666 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.765677 B = 5999.489988 C = 8418.192648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.052 0.948 9 C 0.209 3.791 10 N -0.541 5.541 11 C 0.082 3.918 12 C 0.075 3.925 13 N -0.548 5.548 14 C 0.015 3.985 15 C 0.065 3.935 16 O -0.402 6.402 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.134 3.866 20 C 0.030 3.970 21 C -0.285 4.285 22 S 0.485 5.515 23 N -0.334 5.334 24 N -0.254 5.254 25 H 0.264 0.736 26 H -0.028 1.028 27 H 0.021 0.979 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -12.697 -2.763 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.083 3.917 10 N -0.266 5.266 11 C -0.047 4.047 12 C -0.053 4.053 13 N -0.273 5.273 14 C -0.113 4.113 15 C -0.011 4.011 16 O -0.321 6.321 17 C -0.012 4.012 18 C -0.109 4.109 19 C 0.003 3.997 20 C -0.115 4.115 21 C -0.441 4.441 22 S 0.619 5.381 23 N -0.313 5.313 24 N -0.121 5.121 25 H 0.073 0.927 26 H -0.010 1.010 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.978 -12.529 -0.876 13.175 hybrid contribution -1.034 0.751 -1.541 2.002 sum 2.945 -11.778 -2.417 12.379 Atomic orbital electron populations 1.70021 1.07132 1.27665 1.51908 1.25675 0.95669 1.02317 0.95089 0.85603 0.78592 0.79388 0.78384 1.19850 1.20644 1.19826 1.21402 0.93305 0.91373 1.49678 0.92931 1.19448 0.89863 0.87921 0.94494 1.61813 1.31651 1.02946 1.30190 1.21781 0.94631 0.99698 0.88548 1.21952 0.95968 0.97325 0.90032 1.62091 1.05819 1.51556 1.07878 1.22872 0.96957 0.98085 0.93402 1.22747 0.85335 0.97370 0.95691 1.87932 1.29246 1.54482 1.60442 1.22779 0.92582 0.99739 0.86110 1.22822 0.91960 0.96541 0.99564 1.20497 0.99037 0.94061 0.86119 1.22274 0.89464 1.00903 0.98904 1.28468 1.04649 1.08164 1.02857 1.80822 1.10477 1.44589 1.02173 1.78573 1.12356 1.23796 1.16559 1.71125 1.29795 1.17404 0.93761 0.92731 1.01027 0.96141 0.95254 0.91674 0.91037 0.94297 0.94051 0.89622 0.92397 0.86580 0.92303 0.86326 0.89021 0.94141 0.88397 0.92067 0.77391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.07 13.29 21.45 0.28 -52.79 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.52 -28.71 8.43 25.60 0.22 -28.49 16 8 H 0.05 2.97 7.55 -2.91 -0.02 2.94 16 9 C 0.21 10.34 4.57 85.56 0.39 10.74 16 10 N -0.54 -22.20 4.40 -905.37 -3.99 -26.19 16 11 C 0.08 2.99 4.74 86.31 0.41 3.40 16 12 C 0.08 2.29 4.92 86.30 0.42 2.71 16 13 N -0.55 -14.78 4.73 -895.20 -4.23 -19.02 16 14 C 0.01 0.36 5.44 86.31 0.47 0.83 16 15 C 0.07 1.37 7.01 72.01 0.50 1.88 16 16 O -0.40 -9.32 10.83 -148.98 -1.61 -10.93 16 17 C 0.06 1.28 7.01 72.01 0.50 1.79 16 18 C 0.02 0.43 5.64 86.31 0.49 0.92 16 19 C 0.13 4.55 5.33 85.56 0.46 5.00 16 20 C 0.03 1.05 5.91 41.90 0.25 1.30 16 21 C -0.28 -8.53 9.96 67.15 0.67 -7.86 16 22 S 0.48 12.64 23.40 -56.49 -1.32 11.32 16 23 N -0.33 -11.37 12.54 37.02 0.46 -10.91 16 24 N -0.25 -9.47 11.68 -51.25 -0.60 -10.07 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H -0.03 -1.48 8.06 -2.39 -0.02 -1.50 16 27 H 0.02 1.06 6.10 -2.39 -0.01 1.04 16 28 H 0.03 1.02 6.50 -2.39 -0.02 1.01 16 29 H 0.06 2.78 7.06 -2.39 -0.02 2.77 16 30 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 31 H 0.04 1.12 6.26 -2.39 -0.01 1.11 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 2.11 6.38 -2.39 -0.02 2.10 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 2.99 5.94 -2.39 -0.01 2.97 16 41 H 0.06 1.91 8.03 -2.39 -0.02 1.89 16 42 H 0.21 5.51 8.06 -2.91 -0.02 5.49 16 Total: -1.00 -66.28 349.38 -2.71 -69.00 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.02 Total: 10.28 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.24 Total: -6.73 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -8.07 Total: -118.97 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.61 Total: -10.93 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 12.64 SS G_CDS: -1.32 Total: 11.32 kcal Total: -66.28 -2.71 -69.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127771806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.574 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds