Wall clock time and date at job start Fri Apr 10 2020 18:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 116.99852 * 2 1 4 4 O 1.20820 * 120.00431 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47067 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47293 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47217 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99924 * 179.72468 * 8 7 6 10 10 S 1.71202 * 120.00055 * 0.28038 * 9 8 7 11 11 N 1.34777 * 120.00204 * 180.27781 * 9 8 7 12 12 C 1.40608 * 119.99974 * 174.62156 * 11 9 8 13 13 C 1.40653 * 126.08162 * 325.06439 * 12 11 9 14 14 N 1.30914 * 108.38625 * 179.81560 * 13 12 11 15 15 N 1.40073 * 108.40668 * 0.43937 * 14 13 12 16 16 C 1.37321 * 126.06690 * 179.69365 * 15 14 13 17 17 H 1.08005 * 119.99465 * 180.02562 * 16 15 14 18 18 C 1.38979 * 120.00388 * 0.02970 * 16 15 14 19 19 N 1.31303 * 119.99705 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47337 * 89.99700 * 20 18 16 22 22 H 1.48503 * 109.46851 * 209.99856 * 20 18 16 23 23 H 1.48500 * 109.46821 * 329.99172 * 20 18 16 24 24 C 1.35671 * 126.07758 * 145.37266 * 12 11 9 25 25 H 1.09006 * 109.47407 * 59.99941 * 1 2 3 26 26 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47401 * 300.00463 * 1 2 3 28 28 H 1.08990 * 109.47059 * 59.99920 * 5 3 2 29 29 H 1.08997 * 109.46897 * 299.99585 * 5 3 2 30 30 H 1.09004 * 109.47356 * 59.99806 * 6 5 3 31 31 H 1.08997 * 109.47281 * 300.00258 * 6 5 3 32 32 H 1.08999 * 109.46444 * 60.00258 * 7 6 5 33 33 H 1.08990 * 109.47293 * 300.00228 * 7 6 5 34 34 H 0.97004 * 119.99770 * 0.02562 * 8 7 6 35 35 H 0.97001 * 119.99707 * 354.62282 * 11 9 8 36 36 H 1.07993 * 125.80567 * 359.97438 * 13 12 11 37 37 H 0.97000 * 119.99135 * 179.97438 * 19 18 16 38 38 H 1.08000 * 126.24668 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 6 5.5280 2.8221 0.0002 8 7 5.9434 4.2270 0.0004 9 6 7.2537 4.5422 0.0060 10 16 8.4329 3.3010 0.0058 11 7 7.6359 5.8347 0.0118 12 6 8.9974 6.1647 0.1318 13 6 9.9546 5.4686 0.8918 14 7 11.1088 6.0707 0.7539 15 7 10.9331 7.1764 -0.0880 16 6 11.9082 8.0644 -0.4704 17 1 11.6625 8.8866 -1.1262 18 6 13.2111 7.9051 -0.0138 19 7 13.5096 6.9057 0.7838 20 14 14.5373 9.1136 -0.5335 21 1 14.5966 10.2327 0.4407 22 1 15.8503 8.4210 -0.5724 23 1 14.2193 9.6476 -1.8822 24 6 9.6202 7.2146 -0.4602 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9556 0.7809 -0.8907 29 1 3.9563 0.7806 0.8892 30 1 3.6107 3.2356 0.8907 31 1 3.6100 3.2367 -0.8893 32 1 5.9177 2.3285 -0.8901 33 1 5.9178 2.3275 0.8899 34 1 5.2753 4.9302 0.0008 35 1 6.9716 6.5372 -0.0668 36 1 9.7694 4.5859 1.4858 37 1 14.4190 6.7943 1.1022 38 1 9.1612 7.9467 -1.1080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145463043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:03 Heat of formation + Delta-G solvation = 13.647706 kcal Electronic energy + Delta-G solvation = -21974.428963 eV Core-core repulsion = 18366.513184 eV Total energy + Delta-G solvation = -3607.915779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86949 -39.75278 -38.40502 -37.05207 -35.67714 -33.64082 -32.88827 -30.27983 -29.06243 -27.89968 -26.60521 -24.82874 -23.42721 -22.79479 -21.04063 -20.62689 -19.83124 -18.30877 -17.86315 -17.49580 -17.15099 -17.01276 -16.13993 -15.77751 -15.46599 -14.84822 -14.72653 -14.32914 -13.89069 -13.76022 -13.59181 -13.15058 -12.98671 -12.77486 -12.38888 -12.33667 -11.88753 -11.70536 -11.55901 -11.26606 -11.23575 -11.12705 -10.91834 -10.90076 -10.53894 -10.53130 -9.74043 -9.18705 -8.76974 -8.14002 -7.44956 -6.84782 -6.57487 -6.49269 -4.24326 1.79416 1.82310 2.20255 2.52920 2.96387 3.02849 3.09036 3.11155 3.56191 3.77147 3.98252 4.22058 4.37902 4.52049 4.53165 4.67087 4.75043 4.79238 4.83584 5.01057 5.08797 5.14096 5.15108 5.44788 5.75024 5.81549 5.96142 6.19480 6.22535 6.42740 6.65238 6.91808 7.12334 7.21110 7.31812 7.42545 7.83728 7.87100 8.24012 8.67248 9.33664 9.64002 10.38145 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.060950 B = 0.001998 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.284327 B =14010.821687 C =14323.341887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.462 3.538 4 O -0.509 6.509 5 C -0.109 4.109 6 C -0.124 4.124 7 C 0.132 3.868 8 N -0.701 5.701 9 C 0.548 3.452 10 S -0.647 6.647 11 N -0.567 5.567 12 C -0.087 4.087 13 C 0.028 3.972 14 N -0.262 5.262 15 N -0.140 5.140 16 C -0.323 4.323 17 H 0.117 0.883 18 C 0.047 3.953 19 N -0.764 5.764 20 Si 0.935 3.065 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.264 1.264 24 C -0.062 4.062 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.392 0.608 35 H 0.392 0.608 36 H 0.174 0.826 37 H 0.276 0.724 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.899 -7.417 -1.441 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.305 3.695 4 O -0.397 6.397 5 C -0.147 4.147 6 C -0.162 4.162 7 C 0.008 3.992 8 N -0.334 5.334 9 C 0.188 3.812 10 S -0.521 6.521 11 N -0.186 5.186 12 C -0.193 4.193 13 C -0.151 4.151 14 N -0.090 5.090 15 N 0.096 4.904 16 C -0.456 4.456 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.390 5.390 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.188 1.188 24 C -0.216 4.216 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.227 0.773 35 H 0.227 0.773 36 H 0.190 0.810 37 H 0.087 0.913 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.767 -8.125 -0.977 21.394 hybrid contribution -1.918 1.883 -0.637 2.763 sum -21.685 -6.242 -1.615 22.623 Atomic orbital electron populations 1.23279 0.76190 1.03803 1.02598 1.86515 1.23582 1.33506 1.84064 1.23831 0.92306 0.81283 0.72081 1.90684 1.67378 1.36363 1.45248 1.21243 0.87247 0.99231 1.06999 1.21641 0.95092 0.94998 1.04454 1.21494 0.92300 0.80420 1.04977 1.44671 1.03759 1.09517 1.75465 1.22145 0.87477 0.89238 0.82297 1.93261 1.46722 1.37525 1.74559 1.41456 1.08024 1.03232 1.65869 1.16857 0.82499 1.05169 1.14819 1.23997 0.89920 1.00330 1.00866 1.78353 1.18900 0.98406 1.13384 1.44599 1.03775 1.15868 1.26175 1.19890 0.87551 1.07316 1.30795 0.86588 1.25653 0.98733 0.97223 0.95444 1.70220 1.20392 1.24816 1.23593 0.85822 0.79347 0.79490 0.79470 1.19582 1.19997 1.18800 1.21287 0.86742 1.04144 1.09447 0.91863 0.87998 0.91846 0.86787 0.86768 0.90315 0.90343 0.89607 0.89530 0.77269 0.77280 0.80961 0.91333 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.79 10.56 -39.24 -0.41 -3.20 16 3 C 0.46 3.85 7.96 36.01 0.29 4.13 16 4 O -0.51 -5.67 15.73 -18.75 -0.29 -5.96 16 5 C -0.11 -0.64 5.81 -27.88 -0.16 -0.81 16 6 C -0.12 -0.86 4.62 -26.73 -0.12 -0.98 16 7 C 0.13 1.27 5.13 -4.04 -0.02 1.24 16 8 N -0.70 -7.89 5.56 -62.03 -0.34 -8.23 16 9 C 0.55 9.11 7.91 -86.92 -0.69 8.42 16 10 S -0.65 -13.99 25.08 -107.50 -2.70 -16.69 16 11 N -0.57 -9.55 5.47 -11.53 -0.06 -9.61 16 12 C -0.09 -1.93 6.37 -83.84 -0.53 -2.46 16 13 C 0.03 0.72 10.01 -17.03 -0.17 0.55 16 14 N -0.26 -7.52 10.40 30.80 0.32 -7.20 16 15 N -0.14 -3.78 3.74 -11.41 -0.04 -3.82 16 16 C -0.32 -8.47 10.25 -14.82 -0.15 -8.62 16 17 H 0.12 2.71 7.83 -52.48 -0.41 2.30 16 18 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 19 N -0.76 -21.22 11.81 55.49 0.66 -20.57 16 20 Si 0.93 18.80 29.55 -169.99 -5.02 13.78 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 24 C -0.06 -1.44 11.49 -16.39 -0.19 -1.63 16 25 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 26 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.09 0.91 8.00 -51.93 -0.42 0.49 16 33 H 0.09 0.91 7.99 -51.93 -0.41 0.50 16 34 H 0.39 3.20 8.49 -40.82 -0.35 2.86 16 35 H 0.39 4.95 8.85 -40.82 -0.36 4.59 16 36 H 0.17 4.38 6.42 -51.85 -0.33 4.05 16 37 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.14 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -36.53 345.66 -8.27 -44.80 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.79 Total: 9.28 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -0.78 Total: 2.22 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.53 Total: -49.44 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.71 Total: -9.16 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: -13.99 SS G_CDS: -2.70 Total: -16.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.53 -8.27 -44.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145463043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.448 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds