Wall clock time and date at job start Fri Apr 10 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 116.99852 * 2 1 4 4 O 1.20820 * 120.00431 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47067 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47293 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47217 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99924 * 179.72468 * 8 7 6 10 10 S 1.71202 * 120.00055 * 0.28038 * 9 8 7 11 11 N 1.34777 * 120.00204 * 180.27781 * 9 8 7 12 12 C 1.40608 * 119.99974 * 174.62156 * 11 9 8 13 13 C 1.40653 * 126.08162 * 325.06439 * 12 11 9 14 14 N 1.30914 * 108.38625 * 179.81560 * 13 12 11 15 15 N 1.40073 * 108.40668 * 0.43937 * 14 13 12 16 16 C 1.37321 * 126.06690 * 179.69365 * 15 14 13 17 17 H 1.08005 * 119.99465 * 180.02562 * 16 15 14 18 18 C 1.38979 * 120.00388 * 0.02970 * 16 15 14 19 19 N 1.31303 * 119.99705 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47337 * 89.99700 * 20 18 16 22 22 H 1.48503 * 109.46851 * 209.99856 * 20 18 16 23 23 H 1.48500 * 109.46821 * 329.99172 * 20 18 16 24 24 C 1.35671 * 126.07758 * 145.37266 * 12 11 9 25 25 H 1.09006 * 109.47407 * 59.99941 * 1 2 3 26 26 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47401 * 300.00463 * 1 2 3 28 28 H 1.08990 * 109.47059 * 59.99920 * 5 3 2 29 29 H 1.08997 * 109.46897 * 299.99585 * 5 3 2 30 30 H 1.09004 * 109.47356 * 59.99806 * 6 5 3 31 31 H 1.08997 * 109.47281 * 300.00258 * 6 5 3 32 32 H 1.08999 * 109.46444 * 60.00258 * 7 6 5 33 33 H 1.08990 * 109.47293 * 300.00228 * 7 6 5 34 34 H 0.97004 * 119.99770 * 0.02562 * 8 7 6 35 35 H 0.97001 * 119.99707 * 354.62282 * 11 9 8 36 36 H 1.07993 * 125.80567 * 359.97438 * 13 12 11 37 37 H 0.97000 * 119.99135 * 179.97438 * 19 18 16 38 38 H 1.08000 * 126.24668 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 6 5.5280 2.8221 0.0002 8 7 5.9434 4.2270 0.0004 9 6 7.2537 4.5422 0.0060 10 16 8.4329 3.3010 0.0058 11 7 7.6359 5.8347 0.0118 12 6 8.9974 6.1647 0.1318 13 6 9.9546 5.4686 0.8918 14 7 11.1088 6.0707 0.7539 15 7 10.9331 7.1764 -0.0880 16 6 11.9082 8.0644 -0.4704 17 1 11.6625 8.8866 -1.1262 18 6 13.2111 7.9051 -0.0138 19 7 13.5096 6.9057 0.7838 20 14 14.5373 9.1136 -0.5335 21 1 14.5966 10.2327 0.4407 22 1 15.8503 8.4210 -0.5724 23 1 14.2193 9.6476 -1.8822 24 6 9.6202 7.2146 -0.4602 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9556 0.7809 -0.8907 29 1 3.9563 0.7806 0.8892 30 1 3.6107 3.2356 0.8907 31 1 3.6100 3.2367 -0.8893 32 1 5.9177 2.3285 -0.8901 33 1 5.9178 2.3275 0.8899 34 1 5.2753 4.9302 0.0008 35 1 6.9716 6.5372 -0.0668 36 1 9.7694 4.5859 1.4858 37 1 14.4190 6.7943 1.1022 38 1 9.1612 7.9467 -1.1080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145463043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:02 Heat of formation + Delta-G solvation = -11.514554 kcal Electronic energy + Delta-G solvation = -21975.520080 eV Core-core repulsion = 18366.513184 eV Total energy + Delta-G solvation = -3609.006896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58561 -41.48853 -39.72455 -37.73951 -36.84989 -35.27535 -34.00706 -32.20614 -30.13001 -29.10924 -27.52890 -26.61743 -24.82521 -23.59510 -22.54706 -21.67967 -21.47275 -19.79135 -18.97633 -18.67799 -17.95266 -17.74640 -17.47422 -17.19675 -16.57296 -16.38428 -15.92195 -15.50698 -15.39944 -14.99516 -14.79403 -14.42550 -14.16796 -13.52270 -13.47159 -13.37871 -13.01641 -12.92574 -12.81924 -12.76558 -12.55087 -12.09906 -12.07613 -11.99179 -11.78000 -11.57548 -11.33757 -10.87140 -10.50309 -10.08847 -9.08950 -8.62082 -8.43759 -8.23049 -6.20755 0.38160 1.03457 1.17376 1.34632 1.41093 1.53869 1.59931 1.79853 1.88130 2.17350 2.48522 2.66594 3.04227 3.11954 3.61899 3.92704 3.97724 4.15866 4.31639 4.32881 4.43574 4.53500 4.58721 4.62187 4.73204 4.76013 4.95143 5.01597 5.06167 5.06532 5.26159 5.32575 5.41681 5.63307 5.96782 6.05682 6.38046 6.56816 6.71127 6.80591 7.47088 7.70745 8.54852 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.060950 B = 0.001998 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.284327 B =14010.821687 C =14323.341887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.542 6.542 5 C -0.107 4.107 6 C -0.109 4.109 7 C 0.131 3.869 8 N -0.666 5.666 9 C 0.577 3.423 10 S -0.741 6.741 11 N -0.559 5.559 12 C -0.068 4.068 13 C 0.011 3.989 14 N -0.313 5.313 15 N -0.169 5.169 16 C -0.355 4.355 17 H 0.140 0.860 18 C -0.005 4.005 19 N -0.821 5.821 20 Si 1.017 2.983 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.246 1.246 24 C -0.056 4.056 25 H 0.061 0.939 26 H 0.128 0.872 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.416 0.584 35 H 0.419 0.581 36 H 0.166 0.834 37 H 0.276 0.724 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.236 -6.309 -2.590 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.308 3.692 4 O -0.432 6.432 5 C -0.144 4.144 6 C -0.147 4.147 7 C 0.008 3.992 8 N -0.297 5.297 9 C 0.212 3.788 10 S -0.617 6.617 11 N -0.181 5.181 12 C -0.175 4.175 13 C -0.168 4.168 14 N -0.142 5.142 15 N 0.065 4.935 16 C -0.486 4.486 17 H 0.157 0.843 18 C -0.217 4.217 19 N -0.449 5.449 20 Si 0.836 3.164 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.169 1.169 24 C -0.209 4.209 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.255 0.745 35 H 0.259 0.741 36 H 0.183 0.817 37 H 0.086 0.914 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.223 -7.014 -2.139 23.402 hybrid contribution -1.544 1.414 -0.287 2.113 sum -23.767 -5.600 -2.426 24.538 Atomic orbital electron populations 1.23516 0.75019 1.05575 1.02425 1.86512 1.24849 1.33199 1.83700 1.24205 0.93018 0.80953 0.71014 1.90671 1.68242 1.37314 1.46986 1.21295 0.85801 0.98704 1.08650 1.21489 0.92487 0.96005 1.04727 1.21641 0.94161 0.78874 1.04533 1.44673 1.02071 1.11360 1.71613 1.21540 0.88303 0.87849 0.81070 1.93565 1.49734 1.40097 1.78263 1.41073 1.06634 1.04003 1.66411 1.16775 0.84229 1.03793 1.12723 1.24026 0.90604 1.00400 1.01805 1.78244 1.20828 0.99985 1.15170 1.44841 1.05308 1.16124 1.27202 1.20585 0.88188 1.08096 1.31744 0.84263 1.26843 1.01121 0.98873 0.94844 1.70401 1.20928 1.27599 1.25962 0.84619 0.75319 0.76641 0.79793 1.18714 1.20371 1.16933 1.22019 0.85672 1.04596 1.08582 0.92041 0.85344 0.92055 0.85106 0.85136 0.90095 0.90027 0.90066 0.90030 0.74478 0.74091 0.81724 0.91418 0.79801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.03 10.56 -51.37 -0.54 -5.57 16 3 C 0.46 6.85 7.96 71.24 0.57 7.42 16 4 O -0.54 -11.25 15.73 21.98 0.35 -10.90 16 5 C -0.11 -0.99 5.81 29.85 0.17 -0.81 16 6 C -0.11 -1.20 4.62 30.59 0.14 -1.06 16 7 C 0.13 2.19 5.13 86.38 0.44 2.63 16 8 N -0.67 -12.89 5.56 -350.18 -1.95 -14.83 16 9 C 0.58 18.01 7.91 179.06 1.42 19.43 16 10 S -0.74 -32.38 25.08 -56.49 -1.42 -33.79 16 11 N -0.56 -17.36 5.47 -190.41 -1.04 -18.40 16 12 C -0.07 -2.95 6.37 37.73 0.24 -2.71 16 13 C 0.01 0.58 10.01 85.42 0.86 1.43 16 14 N -0.31 -18.63 10.40 -56.46 -0.59 -19.21 16 15 N -0.17 -9.21 3.74 -190.01 -0.71 -9.92 16 16 C -0.36 -18.68 10.25 84.01 0.86 -17.81 16 17 H 0.14 6.33 7.83 -2.91 -0.02 6.31 16 18 C 0.00 -0.25 5.50 84.95 0.47 0.21 16 19 N -0.82 -47.49 11.81 21.66 0.26 -47.23 16 20 Si 1.02 38.65 29.55 68.60 2.03 40.68 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 22 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 23 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 24 C -0.06 -2.50 11.49 83.37 0.96 -1.54 16 25 H 0.06 0.59 8.13 -2.38 -0.02 0.57 16 26 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 28 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.08 1.55 8.00 -2.39 -0.02 1.53 16 33 H 0.08 1.57 7.99 -2.39 -0.02 1.55 16 34 H 0.42 4.95 8.49 -92.71 -0.79 4.16 16 35 H 0.42 8.85 8.85 -92.71 -0.82 8.03 16 36 H 0.17 8.77 6.42 -3.32 -0.02 8.75 16 37 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.18 6.50 8.06 -2.91 -0.02 6.47 16 Total: -1.00 -84.55 345.66 3.20 -81.34 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.50 Total: 29.21 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 7.32 Total: 8.64 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.03 Total: -109.60 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.20 Total: -16.47 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 16 Polarization: -32.38 SS G_CDS: -1.42 Total: -33.79 kcal Total: -84.55 3.20 -81.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145463043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.830 kcal (2) G-P(sol) polarization free energy of solvation -84.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds