Wall clock time and date at job start Fri Apr 10 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00308 * 2 1 4 4 H 1.07994 * 120.00692 * 202.34718 * 3 2 1 5 5 C 1.38815 * 119.99862 * 22.35003 * 3 2 1 6 6 N 1.31617 * 119.99902 * 11.32921 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 191.33652 * 5 3 2 8 8 H 1.48500 * 109.47244 * 59.99937 * 7 5 3 9 9 H 1.48505 * 109.46584 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46908 * 299.99352 * 7 5 3 11 11 C 1.46501 * 119.99801 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46886 * 269.99540 * 11 2 1 13 13 N 1.46500 * 109.47269 * 179.97438 * 12 11 2 14 14 C 1.46501 * 119.99857 * 85.00412 * 13 12 11 15 15 C 1.50699 * 109.46816 * 275.00274 * 14 13 12 16 16 C 1.38234 * 120.00396 * 90.00297 * 15 14 13 17 17 C 1.38231 * 120.00064 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00436 * 359.97438 * 17 16 15 19 19 C 1.38241 * 119.99643 * 0.27386 * 18 17 16 20 20 C 1.38238 * 120.00071 * 359.51490 * 19 18 17 21 21 S 1.65601 * 120.00035 * 265.00273 * 13 12 11 22 22 C 1.81393 * 104.45083 * 273.92745 * 21 13 12 23 23 O 1.42096 * 104.27868 * 30.00468 * 21 13 12 24 24 O 1.42107 * 104.27616 * 157.85673 * 21 13 12 25 25 H 1.08993 * 109.47313 * 274.21785 * 1 2 3 26 26 H 1.09006 * 109.46931 * 34.22005 * 1 2 3 27 27 H 1.09001 * 109.47416 * 154.21238 * 1 2 3 28 28 H 0.97000 * 119.99797 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.47115 * 150.00292 * 11 2 1 30 30 H 1.08990 * 109.47510 * 29.99847 * 11 2 1 31 31 H 1.09004 * 109.47000 * 60.00283 * 12 11 2 32 32 H 1.08999 * 109.47824 * 300.00257 * 12 11 2 33 33 H 1.09004 * 109.47319 * 155.00304 * 14 13 12 34 34 H 1.08996 * 109.46907 * 35.00100 * 14 13 12 35 35 H 1.07997 * 119.99896 * 359.97359 * 16 15 14 36 36 H 1.08006 * 119.99903 * 179.97438 * 17 16 15 37 37 H 1.07992 * 120.00593 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.99605 * 179.72314 * 19 18 17 39 39 H 1.07998 * 120.00302 * 180.27160 * 20 19 18 40 40 H 1.08995 * 109.47372 * 51.62440 * 22 21 13 41 41 H 1.08997 * 109.47037 * 171.62634 * 22 21 13 42 42 H 1.09003 * 109.47229 * 291.62503 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3841 2.2690 1.0935 7 14 2.3369 4.0047 0.1690 8 1 2.4919 4.2333 -1.2901 9 1 1.4846 5.0734 0.7493 10 1 3.6722 4.0284 0.8185 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1844 -2.9800 1.4413 14 6 4.6452 -2.9830 1.3306 15 6 5.0389 -2.9215 -0.1228 16 6 5.2259 -1.6973 -0.7371 17 6 5.5876 -1.6409 -2.0700 18 6 5.7626 -2.8087 -2.7888 19 6 5.5706 -4.0328 -2.1759 20 6 5.2132 -4.0894 -0.8417 21 16 2.3605 -4.4111 1.5660 22 6 2.1638 -4.6662 3.3511 23 8 1.1036 -4.1459 0.9586 24 8 3.2492 -5.3759 1.0193 25 1 -0.3633 0.0756 1.0248 26 1 -0.3633 0.8498 -0.5780 27 1 -0.3634 -0.9253 -0.4471 28 1 -0.0464 3.0776 1.4126 29 1 3.1499 -1.1382 -0.5143 30 1 1.6084 -2.0281 -0.5147 31 1 1.5000 -1.8415 1.9556 32 1 3.0416 -0.9516 1.9560 33 1 5.0415 -3.8956 1.7760 34 1 5.0510 -2.1173 1.8539 35 1 5.0896 -0.7850 -0.1755 36 1 5.7333 -0.6845 -2.5500 37 1 6.0455 -2.7647 -3.8300 38 1 5.7030 -4.9451 -2.7386 39 1 5.0674 -5.0458 -0.3617 40 1 1.7357 -3.7706 3.8011 41 1 1.5007 -5.5133 3.5261 42 1 3.1370 -4.8680 3.7987 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191987068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:25 Heat of formation + Delta-G solvation = -30.674085 kcal Electronic energy + Delta-G solvation = -25113.879966 eV Core-core repulsion = 21607.582594 eV Total energy + Delta-G solvation = -3506.297372 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27170 -38.29226 -37.95013 -36.91722 -36.57557 -33.44062 -32.27196 -31.70227 -30.29190 -29.60137 -27.87780 -26.57080 -24.65223 -23.37322 -22.26542 -22.19221 -19.75542 -18.82040 -18.48566 -17.77931 -17.25323 -17.00504 -16.72898 -16.11866 -15.88833 -15.65742 -15.49184 -15.03819 -14.48218 -14.30585 -14.20830 -14.11621 -13.93930 -13.84013 -13.53401 -13.34963 -13.20983 -13.06360 -12.96297 -12.76444 -12.67549 -12.52190 -12.33127 -12.04354 -11.99186 -11.89610 -11.83382 -11.68282 -11.42071 -10.62098 -10.11013 -9.67689 -9.55539 -8.71474 -7.77437 -5.25131 -0.66483 0.49423 0.60707 1.49284 1.52330 1.58040 1.73400 2.54932 2.96110 3.03369 3.24445 3.37366 3.62045 3.91107 4.00832 4.06487 4.13575 4.18535 4.25611 4.36763 4.42251 4.62350 4.69390 4.71967 4.80856 4.82589 4.90959 4.91816 4.98095 5.18852 5.22537 5.29289 5.35583 5.40573 5.61980 5.67805 5.69561 5.72275 5.72924 5.84052 6.22883 6.37442 7.19077 7.90339 8.37888 9.26678 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.005655 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.622243 B = 4950.160584 C = 6483.980330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.614 5.614 3 C -0.255 4.255 4 H 0.074 0.926 5 C -0.051 4.051 6 N -0.939 5.939 7 Si 0.966 3.034 8 H -0.283 1.283 9 H -0.297 1.297 10 H -0.271 1.271 11 C 0.129 3.871 12 C 0.122 3.878 13 N -0.988 5.988 14 C 0.161 3.839 15 C -0.118 4.118 16 C -0.108 4.108 17 C -0.139 4.139 18 C -0.123 4.123 19 C -0.137 4.137 20 C -0.114 4.114 21 S 2.598 3.402 22 C -0.652 4.652 23 O -0.999 6.999 24 O -0.975 6.975 25 H 0.009 0.991 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.247 0.753 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.890 -14.701 3.057 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.338 5.338 3 C -0.385 4.385 4 H 0.092 0.908 5 C -0.246 4.246 6 N -0.586 5.586 7 Si 0.795 3.205 8 H -0.210 1.210 9 H -0.224 1.224 10 H -0.197 1.197 11 C 0.002 3.998 12 C -0.006 4.006 13 N -0.824 5.824 14 C 0.037 3.963 15 C -0.120 4.120 16 C -0.126 4.126 17 C -0.157 4.157 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.133 4.133 21 S 2.695 3.305 22 C -0.806 4.806 23 O -0.989 6.989 24 O -0.965 6.965 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.491 -15.105 2.405 18.547 hybrid contribution -0.165 1.452 0.387 1.511 sum 10.325 -13.654 2.792 17.344 Atomic orbital electron populations 1.20545 0.83210 0.95276 0.97737 1.44110 1.01874 1.01698 1.86085 1.19473 0.98106 0.86211 1.34718 0.90820 1.25742 0.98392 1.01581 0.98898 1.70227 1.19208 1.27405 1.41765 0.85359 0.77842 0.79712 0.77605 1.20979 1.22354 1.19679 1.21544 0.96383 0.86283 0.95597 1.21844 0.95150 0.84191 0.99392 1.57511 1.15160 1.21146 1.88632 1.20381 0.78473 1.05457 0.92017 1.20423 1.00459 0.93162 0.97928 1.21187 0.98239 0.97596 0.95620 1.21361 1.00521 0.99161 0.94660 1.21414 0.99703 0.92352 1.00601 1.21438 1.00383 0.98531 0.95177 1.21509 0.98090 0.98766 0.94890 1.05086 0.72974 0.72833 0.79579 1.30378 1.13797 1.12944 1.23468 1.93584 1.45423 1.84203 1.75720 1.93521 1.64964 1.60507 1.77552 0.97239 0.96212 0.96779 0.94365 0.91475 0.95378 0.91842 0.90417 0.86792 0.88091 0.86375 0.85568 0.84336 0.84413 0.84475 0.84455 0.83728 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 9.01 127.77 1.15 10.51 16 2 N -0.61 -31.53 2.93 -726.96 -2.13 -33.66 16 3 C -0.26 -13.73 9.67 84.03 0.81 -12.92 16 4 H 0.07 3.79 7.84 -2.91 -0.02 3.76 16 5 C -0.05 -2.82 5.13 84.86 0.44 -2.39 16 6 N -0.94 -55.02 10.58 21.65 0.23 -54.79 16 7 Si 0.97 44.35 29.57 68.60 2.03 46.38 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 9 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 C 0.13 5.53 5.81 86.38 0.50 6.03 16 12 C 0.12 4.27 5.60 86.38 0.48 4.75 16 13 N -0.99 -26.47 2.73 -519.84 -1.42 -27.89 16 14 C 0.16 3.65 5.44 85.63 0.47 4.11 16 15 C -0.12 -3.22 5.07 -19.86 -0.10 -3.32 16 16 C -0.11 -3.15 7.10 22.27 0.16 -3.00 16 17 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 18 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 19 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16 20 C -0.11 -3.07 9.22 22.27 0.21 -2.86 16 21 S 2.60 65.44 5.96 -56.49 -0.34 65.10 16 22 C -0.65 -9.28 10.99 113.37 1.25 -8.04 16 23 O -1.00 -35.49 16.76 -127.65 -2.14 -37.62 16 24 O -0.97 -26.46 14.81 -127.65 -1.89 -28.35 16 25 H 0.01 0.52 7.42 -2.39 -0.02 0.50 16 26 H 0.02 1.09 7.19 -2.38 -0.02 1.07 16 27 H 0.01 0.67 7.84 -2.39 -0.02 0.65 16 28 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.07 2.75 4.29 -2.39 -0.01 2.74 16 30 H 0.03 1.27 7.48 -2.39 -0.02 1.25 16 31 H 0.06 2.30 7.72 -2.38 -0.02 2.28 16 32 H 0.08 2.73 8.00 -2.39 -0.02 2.72 16 33 H 0.11 1.90 7.43 -2.38 -0.02 1.88 16 34 H 0.10 2.00 7.95 -2.39 -0.02 1.98 16 35 H 0.12 3.60 7.66 -2.91 -0.02 3.58 16 36 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.14 3.60 6.51 -2.91 -0.02 3.58 16 40 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -72.59 352.09 1.38 -71.21 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.00 Total: 16.40 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 6.03 Total: -16.76 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -3.32 Total: -116.34 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -4.03 Total: -65.98 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 65.44 SS G_CDS: -0.34 Total: 65.10 kcal Total: -72.59 1.38 -71.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191987068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.535 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds