Wall clock time and date at job start Fri Apr 10 2020 18:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00222 * 2 1 4 4 C 1.38211 * 120.00110 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99986 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00155 * 179.97438 * 5 4 3 7 7 C 1.38211 * 119.99919 * 359.97438 * 5 4 3 8 8 C 1.50697 * 119.99876 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47322 * 186.05841 * 8 7 5 10 10 C 1.36938 * 119.99646 * 86.10505 * 9 8 7 11 11 H 1.08005 * 120.00064 * 178.57845 * 10 9 8 12 12 C 1.38816 * 120.00324 * 358.57959 * 10 9 8 13 13 N 1.31621 * 119.99367 * 333.34680 * 12 10 9 14 14 Si 1.86792 * 120.00101 * 153.34558 * 12 10 9 15 15 H 1.48498 * 109.47036 * 90.00278 * 14 12 10 16 16 H 1.48502 * 109.47031 * 209.99946 * 14 12 10 17 17 H 1.48503 * 109.47262 * 330.00317 * 14 12 10 18 18 S 1.65601 * 120.00295 * 266.38510 * 9 8 7 19 19 O 1.42100 * 106.39985 * 21.79491 * 18 9 8 20 20 O 1.42093 * 106.40193 * 154.71814 * 18 9 8 21 21 N 1.65602 * 107.21411 * 268.25880 * 18 9 8 22 22 C 1.46498 * 119.99863 * 90.00409 * 21 18 9 23 23 C 1.46499 * 119.99788 * 269.99471 * 21 18 9 24 24 C 1.38222 * 119.99822 * 180.28303 * 2 1 3 25 25 H 1.09000 * 109.47163 * 89.99651 * 1 2 3 26 26 H 1.08998 * 109.47048 * 209.99683 * 1 2 3 27 27 H 1.08996 * 109.47090 * 329.99724 * 1 2 3 28 28 H 1.07994 * 119.99717 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00312 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47333 * 269.41450 * 6 5 4 31 31 H 1.09004 * 109.46734 * 29.41261 * 6 5 4 32 32 H 1.08990 * 109.47412 * 149.40961 * 6 5 4 33 33 H 1.09005 * 109.47233 * 66.06485 * 8 7 5 34 34 H 1.08995 * 109.47664 * 306.06400 * 8 7 5 35 35 H 0.97000 * 119.99440 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.47489 * 89.99929 * 22 21 18 37 37 H 1.09006 * 109.46971 * 209.99380 * 22 21 18 38 38 H 1.09001 * 109.47205 * 329.99408 * 22 21 18 39 39 H 1.09002 * 109.46819 * 90.00758 * 23 21 18 40 40 H 1.09006 * 109.46808 * 210.00519 * 23 21 18 41 41 H 1.09001 * 109.47228 * 330.00377 * 23 21 18 42 42 H 1.07991 * 119.99652 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7788 -0.0002 -0.0028 7 6 3.5806 -1.1970 -0.0016 8 6 4.3341 -2.5021 -0.0034 9 7 3.3886 -3.6117 -0.1488 10 6 2.9925 -4.0146 -1.3962 11 1 2.3133 -4.8474 -1.5043 12 6 3.4638 -3.3527 -2.5217 13 7 3.8299 -2.0912 -2.4380 14 14 3.5783 -4.2522 -4.1547 15 1 2.3035 -4.0911 -4.8991 16 1 4.6937 -3.6856 -4.9548 17 1 3.8288 -5.6951 -3.9085 18 16 2.7936 -4.3742 1.1954 19 8 2.9441 -3.4614 2.2741 20 8 1.5426 -4.9331 0.8190 21 7 3.7976 -5.6507 1.5195 22 6 4.9530 -5.4683 2.4016 23 6 3.5302 -6.9623 0.9243 24 6 2.1981 -1.1970 -0.0059 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6584 2.1326 0.0004 29 1 4.1205 2.1326 -0.0010 30 1 6.1413 -0.0102 -1.0306 31 1 6.1425 0.8948 0.5021 32 1 6.1425 -0.8850 0.5195 33 1 4.8780 -2.6090 0.9353 34 1 5.0387 -2.5138 -0.8348 35 1 4.1596 -1.6287 -3.2244 36 1 4.6600 -5.6730 3.4313 37 1 5.7471 -6.1543 2.1066 38 1 5.3116 -4.4419 2.3230 39 1 4.0436 -7.0377 -0.0343 40 1 3.8909 -7.7447 1.5922 41 1 2.4574 -7.0805 0.7723 42 1 1.6581 -2.1322 -0.0101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225826956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:37 Heat of formation + Delta-G solvation = -30.788186 kcal Electronic energy + Delta-G solvation = -25905.457672 eV Core-core repulsion = 22399.155352 eV Total energy + Delta-G solvation = -3506.302320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -38.80747 -36.34925 -35.77119 -35.48702 -34.87337 -33.11217 -31.41896 -29.97963 -28.48855 -27.67612 -26.05127 -24.16937 -24.02204 -23.55827 -20.95447 -19.35318 -18.58135 -17.55202 -16.66966 -16.62741 -15.31837 -15.06773 -14.66659 -14.48517 -14.03585 -13.95965 -13.65329 -13.34903 -13.01594 -12.89610 -12.68183 -12.40918 -12.23547 -12.07536 -11.93438 -11.91475 -11.81226 -11.48444 -11.31054 -11.21680 -10.98818 -10.91842 -10.89133 -10.84685 -10.54978 -10.33764 -10.26660 -10.10440 -9.88104 -9.20382 -8.52707 -8.12004 -7.59264 -7.33077 -6.17860 -3.73259 1.54112 2.36942 2.52890 3.22063 3.30835 3.33256 3.81108 4.28109 4.52193 4.77539 5.02452 5.23241 5.30208 5.60477 5.65932 5.68093 5.73822 5.82711 5.87250 5.90392 5.98485 5.99362 6.11439 6.18074 6.18913 6.21676 6.32312 6.39124 6.41597 6.50518 6.53538 6.67555 6.75037 7.03047 7.10484 7.18632 7.35861 7.42249 7.58910 7.61936 7.83746 8.09569 8.45676 8.98930 9.35774 10.78205 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.007679 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.685388 B = 3645.484707 C = 4514.411130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.124 4.124 5 C -0.099 4.099 6 C -0.102 4.102 7 C 0.009 3.991 8 C 0.185 3.815 9 N -0.856 5.856 10 C -0.327 4.327 11 H 0.106 0.894 12 C 0.051 3.949 13 N -0.849 5.849 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.285 1.285 17 H -0.273 1.273 18 S 2.752 3.248 19 O -0.995 6.995 20 O -0.987 6.987 21 N -1.025 6.025 22 C 0.101 3.899 23 C 0.092 3.908 24 C -0.079 4.079 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.111 0.889 35 H 0.264 0.736 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 -0.608 4.700 6.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.164 4.164 4 C -0.142 4.142 5 C -0.100 4.100 6 C -0.159 4.159 7 C 0.006 3.994 8 C 0.059 3.941 9 N -0.690 5.690 10 C -0.457 4.457 11 H 0.123 0.877 12 C -0.155 4.155 13 N -0.488 5.488 14 Si 0.722 3.278 15 H -0.208 1.208 16 H -0.211 1.211 17 H -0.198 1.198 18 S 2.765 3.235 19 O -0.979 6.979 20 O -0.971 6.971 21 N -0.862 5.862 22 C -0.046 4.046 23 C -0.054 4.054 24 C -0.098 4.098 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.026 -0.310 5.154 5.985 hybrid contribution 0.426 -0.496 -1.429 1.571 sum 3.452 -0.806 3.725 5.143 Atomic orbital electron populations 1.20695 0.92614 1.01540 1.01526 1.19725 0.95126 0.93556 1.01716 1.20582 0.94056 0.96389 1.05419 1.20635 0.93936 0.96522 1.03132 1.19372 0.95045 0.92649 1.02923 1.20631 0.92566 1.01025 1.01633 1.19666 0.93544 0.94080 0.92087 1.20031 0.91603 0.82996 0.99479 1.53354 1.56887 1.39261 1.19534 1.19057 1.28425 1.17097 0.81129 0.87677 1.24921 0.97563 0.94708 0.98353 1.70203 1.41946 1.06664 1.29943 0.86472 0.77902 0.80253 0.83203 1.20772 1.21107 1.19827 1.02869 0.74642 0.73035 0.73004 1.93532 1.87264 1.63018 1.54087 1.93490 1.40554 1.79119 1.83923 1.58563 1.42688 1.24645 1.60316 1.21288 0.88320 1.01824 0.93149 1.21413 1.02120 0.84123 0.97751 1.20613 0.94080 0.96475 0.98624 0.91932 0.92166 0.92626 0.87888 0.87762 0.91633 0.93088 0.92320 0.93667 0.87162 0.92469 0.93521 0.91935 0.91632 0.92853 0.92238 0.90597 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 36.01 0.36 -1.54 16 2 C -0.10 -2.14 5.88 -104.62 -0.62 -2.75 16 3 C -0.15 -2.81 9.70 -39.58 -0.38 -3.20 16 4 C -0.12 -2.35 9.70 -39.58 -0.38 -2.74 16 5 C -0.10 -2.01 5.88 -104.62 -0.62 -2.62 16 6 C -0.10 -1.70 9.49 36.01 0.34 -1.35 16 7 C 0.01 0.20 3.91 -104.63 -0.41 -0.21 16 8 C 0.19 4.10 3.63 -5.19 -0.02 4.09 16 9 N -0.86 -19.88 1.79 -61.08 -0.11 -19.99 16 10 C -0.33 -8.10 8.83 -15.06 -0.13 -8.23 16 11 H 0.11 2.65 7.36 -52.48 -0.39 2.26 16 12 C 0.05 1.25 4.97 -17.43 -0.09 1.16 16 13 N -0.85 -20.99 8.81 55.49 0.49 -20.50 16 14 Si 0.89 19.46 29.63 -169.99 -5.04 14.42 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 S 2.75 61.11 5.40 -107.50 -0.58 60.53 16 19 O -0.99 -23.33 16.15 -57.17 -0.92 -24.25 16 20 O -0.99 -24.22 15.61 -57.17 -0.89 -25.12 16 21 N -1.02 -18.36 3.64 -129.20 -0.47 -18.83 16 22 C 0.10 1.47 10.29 59.85 0.62 2.08 16 23 C 0.09 1.43 10.66 59.85 0.64 2.06 16 24 C -0.08 -1.89 8.56 -39.58 -0.34 -2.23 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 27 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.06 0.93 6.83 -51.93 -0.35 0.58 16 33 H 0.05 0.92 7.03 -51.93 -0.37 0.55 16 34 H 0.11 2.52 5.97 -51.93 -0.31 2.21 16 35 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.06 0.97 7.56 -51.93 -0.39 0.58 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.72 8.07 -51.93 -0.42 0.31 16 41 H 0.08 1.24 7.02 -51.93 -0.36 0.88 16 42 H 0.11 2.81 6.15 -52.49 -0.32 2.49 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -29.55 349.18 -9.56 -39.10 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.27 Total: 4.84 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.03 Total: -15.47 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.09 Total: -59.32 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.82 Total: -49.37 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.04 Total: 14.42 kcal Atomic # 16 Polarization: 61.11 SS G_CDS: -0.58 Total: 60.53 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.55 -9.56 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225826956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.315 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds