Wall clock time and date at job start Fri Apr 10 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00222 * 2 1 4 4 C 1.38211 * 120.00110 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99986 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00155 * 179.97438 * 5 4 3 7 7 C 1.38211 * 119.99919 * 359.97438 * 5 4 3 8 8 C 1.50697 * 119.99876 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47322 * 186.05841 * 8 7 5 10 10 C 1.36938 * 119.99646 * 86.10505 * 9 8 7 11 11 H 1.08005 * 120.00064 * 178.57845 * 10 9 8 12 12 C 1.38816 * 120.00324 * 358.57959 * 10 9 8 13 13 N 1.31621 * 119.99367 * 333.34680 * 12 10 9 14 14 Si 1.86792 * 120.00101 * 153.34558 * 12 10 9 15 15 H 1.48498 * 109.47036 * 90.00278 * 14 12 10 16 16 H 1.48502 * 109.47031 * 209.99946 * 14 12 10 17 17 H 1.48503 * 109.47262 * 330.00317 * 14 12 10 18 18 S 1.65601 * 120.00295 * 266.38510 * 9 8 7 19 19 O 1.42100 * 106.39985 * 21.79491 * 18 9 8 20 20 O 1.42093 * 106.40193 * 154.71814 * 18 9 8 21 21 N 1.65602 * 107.21411 * 268.25880 * 18 9 8 22 22 C 1.46498 * 119.99863 * 90.00409 * 21 18 9 23 23 C 1.46499 * 119.99788 * 269.99471 * 21 18 9 24 24 C 1.38222 * 119.99822 * 180.28303 * 2 1 3 25 25 H 1.09000 * 109.47163 * 89.99651 * 1 2 3 26 26 H 1.08998 * 109.47048 * 209.99683 * 1 2 3 27 27 H 1.08996 * 109.47090 * 329.99724 * 1 2 3 28 28 H 1.07994 * 119.99717 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00312 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47333 * 269.41450 * 6 5 4 31 31 H 1.09004 * 109.46734 * 29.41261 * 6 5 4 32 32 H 1.08990 * 109.47412 * 149.40961 * 6 5 4 33 33 H 1.09005 * 109.47233 * 66.06485 * 8 7 5 34 34 H 1.08995 * 109.47664 * 306.06400 * 8 7 5 35 35 H 0.97000 * 119.99440 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.47489 * 89.99929 * 22 21 18 37 37 H 1.09006 * 109.46971 * 209.99380 * 22 21 18 38 38 H 1.09001 * 109.47205 * 329.99408 * 22 21 18 39 39 H 1.09002 * 109.46819 * 90.00758 * 23 21 18 40 40 H 1.09006 * 109.46808 * 210.00519 * 23 21 18 41 41 H 1.09001 * 109.47228 * 330.00377 * 23 21 18 42 42 H 1.07991 * 119.99652 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7788 -0.0002 -0.0028 7 6 3.5806 -1.1970 -0.0016 8 6 4.3341 -2.5021 -0.0034 9 7 3.3886 -3.6117 -0.1488 10 6 2.9925 -4.0146 -1.3962 11 1 2.3133 -4.8474 -1.5043 12 6 3.4638 -3.3527 -2.5217 13 7 3.8299 -2.0912 -2.4380 14 14 3.5783 -4.2522 -4.1547 15 1 2.3035 -4.0911 -4.8991 16 1 4.6937 -3.6856 -4.9548 17 1 3.8288 -5.6951 -3.9085 18 16 2.7936 -4.3742 1.1954 19 8 2.9441 -3.4614 2.2741 20 8 1.5426 -4.9331 0.8190 21 7 3.7976 -5.6507 1.5195 22 6 4.9530 -5.4683 2.4016 23 6 3.5302 -6.9623 0.9243 24 6 2.1981 -1.1970 -0.0059 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6584 2.1326 0.0004 29 1 4.1205 2.1326 -0.0010 30 1 6.1413 -0.0102 -1.0306 31 1 6.1425 0.8948 0.5021 32 1 6.1425 -0.8850 0.5195 33 1 4.8780 -2.6090 0.9353 34 1 5.0387 -2.5138 -0.8348 35 1 4.1596 -1.6287 -3.2244 36 1 4.6600 -5.6730 3.4313 37 1 5.7471 -6.1543 2.1066 38 1 5.3116 -4.4419 2.3230 39 1 4.0436 -7.0377 -0.0343 40 1 3.8909 -7.7447 1.5922 41 1 2.4574 -7.0805 0.7723 42 1 1.6581 -2.1322 -0.0101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225826956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:36 Heat of formation + Delta-G solvation = -48.310193 kcal Electronic energy + Delta-G solvation = -25906.217484 eV Core-core repulsion = 22399.155352 eV Total energy + Delta-G solvation = -3507.062131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.37611 -38.20097 -37.47258 -36.92126 -36.70840 -34.61024 -33.21212 -31.59990 -29.89721 -28.92022 -27.75927 -25.76446 -25.43390 -25.16311 -22.54641 -20.91602 -20.32594 -19.22977 -18.40346 -18.34884 -16.93621 -16.59769 -16.34433 -16.08766 -15.54726 -15.45516 -15.23164 -14.85599 -14.72972 -14.41965 -14.12774 -13.90124 -13.68193 -13.45552 -13.43207 -13.32778 -13.28395 -13.23815 -13.11760 -12.65961 -12.62605 -12.58528 -12.57111 -12.39988 -12.23699 -11.98699 -11.84014 -11.78339 -11.51896 -10.92754 -9.98868 -9.87076 -9.21157 -8.89047 -7.98620 -5.61766 -0.17092 0.79458 0.94930 1.46507 1.51690 1.59706 2.20763 2.53865 2.76132 3.16396 3.19278 3.55682 3.97839 4.17576 4.19634 4.25966 4.39504 4.45375 4.51840 4.56388 4.57578 4.78628 4.80503 4.82667 4.84951 4.90259 4.95281 4.96479 5.01657 5.04512 5.11406 5.17156 5.22431 5.45828 5.62546 5.64199 5.69682 5.83214 5.87459 6.00794 6.19944 6.53231 6.63419 7.15562 7.50974 8.94638 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.007679 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.685388 B = 3645.484707 C = 4514.411130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.121 4.121 3 C -0.147 4.147 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.098 4.098 7 C -0.014 4.014 8 C 0.191 3.809 9 N -0.870 5.870 10 C -0.343 4.343 11 H 0.090 0.910 12 C 0.016 3.984 13 N -0.864 5.864 14 Si 0.951 3.049 15 H -0.292 1.292 16 H -0.282 1.282 17 H -0.267 1.267 18 S 2.774 3.226 19 O -1.014 7.014 20 O -1.020 7.020 21 N -1.021 6.021 22 C 0.090 3.910 23 C 0.085 3.915 24 C -0.115 4.115 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 -0.110 5.279 7.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.121 4.121 3 C -0.165 4.165 4 C -0.142 4.142 5 C -0.113 4.113 6 C -0.154 4.154 7 C -0.017 4.017 8 C 0.065 3.935 9 N -0.704 5.704 10 C -0.472 4.472 11 H 0.108 0.892 12 C -0.188 4.188 13 N -0.503 5.503 14 Si 0.777 3.223 15 H -0.219 1.219 16 H -0.208 1.208 17 H -0.192 1.192 18 S 2.785 3.215 19 O -0.997 6.997 20 O -1.004 7.004 21 N -0.862 5.862 22 C -0.055 4.055 23 C -0.060 4.060 24 C -0.134 4.134 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.530 0.198 5.707 7.289 hybrid contribution -0.068 -0.693 -1.456 1.614 sum 4.462 -0.495 4.251 6.182 Atomic orbital electron populations 1.20717 0.90882 1.02505 1.02014 1.20126 0.96795 0.93543 1.01627 1.20980 0.94590 0.96850 1.04112 1.21108 0.94177 0.97505 1.01363 1.19824 0.97003 0.92311 1.02204 1.20646 0.90192 1.02614 1.01956 1.19890 0.93419 0.95290 0.93080 1.20033 0.91180 0.82817 0.99472 1.53228 1.57069 1.41447 1.18705 1.18985 1.29676 1.16397 0.82113 0.89218 1.25430 0.97821 0.95202 1.00347 1.70331 1.42909 1.07087 1.29952 0.85630 0.77133 0.79531 0.80023 1.21886 1.20773 1.19198 1.01661 0.73960 0.73296 0.72575 1.93496 1.87429 1.63929 1.54890 1.93440 1.42733 1.79896 1.84366 1.57968 1.43319 1.24145 1.60803 1.21622 0.87851 1.02676 0.93368 1.21635 1.01588 0.83665 0.99075 1.20578 0.94892 0.96194 1.01694 0.91609 0.93360 0.89472 0.84575 0.84214 0.91769 0.90139 0.92154 0.92519 0.88112 0.93000 0.91829 0.88348 0.92180 0.92417 0.87894 0.92094 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.71 10.01 71.24 0.71 -2.99 16 2 C -0.12 -5.12 5.88 -19.86 -0.12 -5.24 16 3 C -0.15 -5.40 9.70 22.27 0.22 -5.18 16 4 C -0.12 -4.41 9.70 22.27 0.22 -4.19 16 5 C -0.11 -4.46 5.88 -19.87 -0.12 -4.57 16 6 C -0.10 -3.08 9.49 71.24 0.68 -2.40 16 7 C -0.01 -0.66 3.91 -19.87 -0.08 -0.74 16 8 C 0.19 8.65 3.63 85.63 0.31 8.96 16 9 N -0.87 -41.69 1.79 -347.17 -0.62 -42.31 16 10 C -0.34 -17.62 8.83 84.03 0.74 -16.87 16 11 H 0.09 4.76 7.36 -2.91 -0.02 4.74 16 12 C 0.02 0.81 4.97 84.86 0.42 1.23 16 13 N -0.86 -43.72 8.81 21.65 0.19 -43.53 16 14 Si 0.95 40.79 29.63 68.60 2.03 42.83 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 S 2.77 125.95 5.40 -56.49 -0.30 125.65 16 19 O -1.01 -48.45 16.15 -128.00 -2.07 -50.52 16 20 O -1.02 -52.13 15.61 -128.00 -2.00 -54.12 16 21 N -1.02 -35.46 3.64 -562.68 -2.05 -37.51 16 22 C 0.09 2.40 10.29 127.77 1.31 3.72 16 23 C 0.09 2.51 10.66 127.77 1.36 3.87 16 24 C -0.11 -5.65 8.56 22.27 0.19 -5.46 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 1.77 8.09 -2.39 -0.02 1.76 16 27 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 28 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.03 8.08 -2.38 -0.02 2.01 16 32 H 0.06 1.85 6.83 -2.39 -0.02 1.83 16 33 H 0.06 2.33 7.03 -2.38 -0.02 2.32 16 34 H 0.10 4.71 5.97 -2.39 -0.01 4.70 16 35 H 0.26 12.83 8.31 -92.71 -0.77 12.06 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.96 8.07 -2.38 -0.02 1.94 16 38 H 0.06 1.68 7.56 -2.39 -0.02 1.66 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 2.15 8.07 -2.38 -0.02 2.13 16 41 H 0.06 1.98 7.02 -2.39 -0.02 1.96 16 42 H 0.08 4.12 6.15 -2.92 -0.02 4.10 16 Total: -1.00 -66.28 349.18 2.04 -64.24 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 1.01 Total: 25.14 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 5.85 Total: -29.87 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -2.48 Total: -123.35 kcal Atomic # 8 Polarization: -100.58 SS G_CDS: -4.06 Total: -104.64 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 125.95 SS G_CDS: -0.30 Total: 125.65 kcal Total: -66.28 2.04 -64.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225826956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.929 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds