Wall clock time and date at job start Fri Apr 10 2020 18:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35635 * 117.00191 * 2 1 4 4 N 1.32961 * 120.49921 * 0.02562 * 3 2 1 5 5 C 1.31751 * 120.97100 * 179.97438 * 4 3 2 6 6 N 1.31785 * 122.01248 * 359.97438 * 5 4 3 7 7 C 1.33028 * 120.88953 * 0.02562 * 6 5 4 8 8 N 1.38815 * 120.52657 * 179.97438 * 7 6 5 9 9 C 1.46904 * 111.00347 * 14.41968 * 8 7 6 10 10 C 1.46898 * 111.00210 * 250.45911 * 8 7 6 11 11 C 1.39377 * 120.49754 * 180.25262 * 3 2 1 12 12 N 1.40414 * 120.91204 * 0.02562 * 11 3 2 13 13 C 1.34773 * 120.00251 * 51.92637 * 12 11 3 14 14 O 1.21314 * 119.99603 * 352.93275 * 13 12 11 15 15 C 1.50692 * 120.00153 * 172.93621 * 13 12 11 16 16 S 1.81006 * 109.47138 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99789 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00427 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99608 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00024 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00206 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47448 * 90.00320 * 21 19 17 23 23 H 1.48499 * 109.47139 * 210.00269 * 21 19 17 24 24 H 1.48501 * 109.47035 * 330.00093 * 21 19 17 25 25 H 1.08998 * 109.47571 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47093 * 299.99945 * 1 2 3 27 27 H 1.09003 * 109.47092 * 59.99740 * 1 2 3 28 28 H 1.07998 * 118.99399 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.46901 * 59.99308 * 9 8 7 30 30 H 1.09002 * 109.46722 * 299.99471 * 9 8 7 31 31 H 1.09004 * 109.47136 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.47269 * 179.76803 * 10 8 7 33 33 H 1.08999 * 109.47736 * 299.76792 * 10 8 7 34 34 H 1.08999 * 109.46988 * 59.76893 * 10 8 7 35 35 H 0.97000 * 119.99597 * 231.93139 * 12 11 3 36 36 H 1.08995 * 109.47446 * 300.00019 * 15 13 12 37 37 H 1.09001 * 109.47564 * 60.00014 * 15 13 12 38 38 H 0.96996 * 120.00321 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 7 1.3304 2.3299 0.0005 5 6 1.9189 3.5087 0.0010 6 7 3.2307 3.6346 0.0016 7 6 4.0196 2.5634 0.0011 8 7 5.4006 2.7048 0.0011 9 6 5.7891 4.0796 0.3432 10 6 5.9710 2.3027 -1.2915 11 6 3.4360 1.2935 -0.0053 12 7 4.2294 0.1350 -0.0113 13 6 4.0128 -0.8254 -0.9316 14 8 3.0545 -0.7511 -1.6718 15 6 4.9608 -1.9917 -1.0410 16 16 4.4033 -3.1008 -2.3584 17 6 5.6555 -4.3372 -2.2677 18 1 6.4491 -4.2497 -1.5405 19 6 5.6224 -5.4230 -3.1316 20 7 6.5575 -6.3470 -3.0635 21 14 4.2500 -5.5741 -4.3898 22 1 4.6570 -4.9009 -5.6494 23 1 3.9820 -7.0094 -4.6600 24 1 3.0202 -4.9320 -3.8604 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.3076 4.3990 0.0019 29 1 5.4123 4.3274 1.3355 30 1 5.3673 4.7690 -0.3882 31 1 6.8760 4.1624 0.3364 32 1 7.0536 2.4272 -1.2654 33 1 5.7302 1.2575 -1.4856 34 1 5.5526 2.9249 -2.0826 35 1 4.9334 0.0260 0.6471 36 1 5.9612 -1.6263 -1.2724 37 1 4.9815 -2.5332 -0.0952 38 1 6.5346 -7.1056 -3.6675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269193124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:45 Heat of formation + Delta-G solvation = -22.238120 kcal Electronic energy + Delta-G solvation = -23887.701927 eV Core-core repulsion = 20278.230022 eV Total energy + Delta-G solvation = -3609.471905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.69791 -40.50124 -39.88518 -38.18343 -36.03560 -34.66103 -33.54463 -32.19132 -30.04066 -28.82486 -28.46995 -27.84526 -26.15443 -25.09897 -23.02336 -22.05380 -20.10175 -19.59378 -19.15437 -18.65842 -18.00892 -17.22676 -17.09933 -16.94409 -16.30731 -16.26643 -16.17912 -15.89960 -15.14333 -15.07242 -14.98132 -14.82830 -14.74856 -13.79843 -13.34779 -13.31464 -13.21951 -13.05266 -12.99729 -12.73771 -12.72752 -12.64208 -12.34690 -11.87034 -11.83393 -11.21948 -11.16383 -11.10706 -10.53092 -10.48049 -10.02552 -9.34889 -8.97909 -8.50565 -6.20969 -0.27400 -0.01446 0.96294 1.31271 1.45226 1.49431 1.53985 1.78584 2.07294 2.25211 2.39083 2.67310 2.70580 2.87976 3.08786 3.24415 3.62561 3.91310 4.00504 4.20224 4.24259 4.26587 4.35613 4.37002 4.45964 4.54428 4.64660 4.68895 4.83277 4.88811 5.05462 5.17347 5.40346 5.72059 5.83188 5.87238 6.11445 6.13382 6.27304 6.94841 6.96032 7.09473 8.61893 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.003957 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.458153 B = 7074.076157 C = 8177.802521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.298 6.298 3 C 0.365 3.635 4 N -0.587 5.587 5 C 0.346 3.654 6 N -0.566 5.566 7 C 0.362 3.638 8 N -0.482 5.482 9 C 0.035 3.965 10 C 0.029 3.971 11 C -0.002 4.002 12 N -0.640 5.640 13 C 0.537 3.463 14 O -0.529 6.529 15 C -0.105 4.105 16 S -0.168 6.168 17 C -0.528 4.528 18 H 0.064 0.936 19 C 0.048 3.952 20 N -0.917 5.917 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.260 1.260 24 H -0.237 1.237 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.241 0.759 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.426 0.574 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 22.775 9.112 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.200 6.200 3 C 0.177 3.823 4 N -0.320 5.320 5 C 0.057 3.943 6 N -0.290 5.290 7 C 0.123 3.877 8 N -0.200 5.200 9 C -0.111 4.111 10 C -0.116 4.116 11 C -0.104 4.104 12 N -0.291 5.291 13 C 0.324 3.676 14 O -0.403 6.403 15 C -0.256 4.256 16 S 0.058 5.942 17 C -0.676 4.676 18 H 0.082 0.918 19 C -0.157 4.157 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.161 1.161 25 H 0.127 0.873 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.257 0.743 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.266 0.734 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.628 22.813 8.155 25.399 hybrid contribution 1.136 -1.015 0.113 1.528 sum -6.492 21.798 8.268 24.201 Atomic orbital electron populations 1.23078 0.75548 1.04362 1.02607 1.86413 1.24563 1.23636 1.85429 1.20312 0.88637 0.85837 0.87475 1.68227 1.41249 0.98825 1.23708 1.25286 0.87854 0.94487 0.86675 1.68563 1.07151 1.31557 1.21708 1.20046 0.91477 0.86676 0.89501 1.59199 1.02458 1.27684 1.30680 1.22393 1.02193 0.84555 1.01949 1.22539 1.02108 1.01093 0.85881 1.17911 0.88384 0.88031 1.16106 1.42837 1.36761 1.16026 1.33467 1.20160 0.85090 0.82825 0.79541 1.90720 1.29757 1.76647 1.43181 1.23189 1.02154 0.96537 1.03744 1.84721 1.38559 1.24299 1.46595 1.22469 1.12165 1.09317 1.23618 0.91780 1.25511 0.97859 0.94035 0.98336 1.70012 1.34650 1.11820 1.39029 0.85907 0.81299 0.79167 0.80244 1.18737 1.18445 1.16094 0.87258 0.90904 0.92453 0.74320 0.90800 0.93340 0.88467 0.86785 0.91971 0.94541 0.73411 0.86272 0.86728 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.41 113.37 1.18 2.10 16 2 O -0.30 -9.53 7.95 -67.86 -0.54 -10.07 16 3 C 0.36 10.81 6.95 84.80 0.59 11.40 16 4 N -0.59 -14.69 9.38 -312.59 -2.93 -17.62 16 5 C 0.35 6.77 12.28 180.90 2.22 8.99 16 6 N -0.57 -12.11 8.94 -197.26 -1.76 -13.88 16 7 C 0.36 8.50 6.12 133.09 0.81 9.32 16 8 N -0.48 -9.08 4.83 -750.73 -3.63 -12.71 16 9 C 0.04 0.49 8.86 127.69 1.13 1.63 16 10 C 0.03 0.54 9.34 127.69 1.19 1.73 16 11 C 0.00 -0.06 5.82 38.41 0.22 0.17 16 12 N -0.64 -17.23 3.77 -302.05 -1.14 -18.37 16 13 C 0.54 18.67 7.03 87.66 0.62 19.29 16 14 O -0.53 -22.45 13.47 18.49 0.25 -22.20 16 15 C -0.11 -3.88 6.16 71.23 0.44 -3.44 16 16 S -0.17 -8.32 18.55 -56.49 -1.05 -9.37 16 17 C -0.53 -30.24 10.04 67.95 0.68 -29.56 16 18 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 19 C 0.05 2.79 5.50 84.86 0.47 3.25 16 20 N -0.92 -55.37 13.97 21.65 0.30 -55.07 16 21 Si 0.91 44.55 27.74 68.60 1.90 46.45 16 22 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 25 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 27 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 28 H 0.24 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.72 7.74 -2.39 -0.02 0.71 16 31 H 0.10 0.93 8.12 -2.38 -0.02 0.91 16 32 H 0.11 1.47 8.12 -2.39 -0.02 1.45 16 33 H 0.06 1.40 6.42 -2.39 -0.02 1.38 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.43 9.01 8.83 -92.71 -0.82 8.19 16 36 H 0.12 3.93 8.14 -2.40 -0.02 3.91 16 37 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 38 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -74.97 338.65 1.20 -73.77 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.24 Total: 14.19 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 9.56 Total: 24.88 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -9.16 Total: -117.64 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.29 Total: -32.27 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.05 Total: -9.37 kcal Total: -74.97 1.20 -73.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269193124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.530 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds